BAC Information

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BAC

Clone NameB6Ng01-340I15
Chromosome7 (Build37)
Map Location 49,730,765 - 49,731,299
singlet/doubletsinglet
Overlap geneBC063263
Upstream geneEG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503
Downstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I15.bB6Ng01-340I15.g
ACCGA124212GA124213
length1,1911,102
definitionB6Ng01-340I15.b B6Ng01-340I15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccattccattcaaatggaaatccaagctggcaacctatgtgctgc
tgtagacaattttcaacctgctttctctctggtctgctttttctggagct
ctccagacaactttatgttttgctccaggaagttctctcttgcattctaa
acaattctttggacagctcatctcctgtagatcataaacctagactttta
ttttagtgttacaattttccagtcatttacttcaggtttccttttcattg
tactatgaatctgcatactttgactccagcccctttaaatcttaggaaac
agcaagcatacttttttttttttttaaaccttgcaaaagaattcagagat
ctgcctgcccatgttaagcagatactaaaaactagatgggtgggacccac
tctgaaattaccatttctcccacacctggacctaaccttactttgtccca
ggctgaacatttaactcagggatttgtctgcctttgtaaatataaacaaa
caaacacacaaacaaacaaaactttgctgggtgggttctcctgcaatcat
cacttcctaaatttctctatctcctccctcagtatctttctaacaagttg
gcttatagtgtagctgtctgttcctttagatttgtgaagcccctcatata
atttatattgcatcattattttttgcaaaattgagaaattataaatttta
aactgtgtctttagatatttttttatcacagcctttagagctgtccttaa
tgtaccagaatttaccattttgctaagacattagtcacacctttgcctcc
tgaccttgtacttattctgattatctttaagtcatctcagttaacaggta
agacattccttaaaggaggaattgtaaaatatgtatattactatacaaac
aagccttatgcccattgctgccatcaacacttgtggaggcccatgaccaa
tggcccatcccatgggcagagacatgtcattctgtcccagcagcatgctg
actgcacccagacagaaagaagatcatgagcagacagttatgactgatcg
gagactgactgttgcagatctcagcagaataaatacagagagctgattct
tttcttagggtctcgatgatctctttatcgtaatcagttcggatccgact
gacgtctatctgacatgtctcctcacccttttgggtcttca
gaattctgtggtgggttttaagagttgaaccctctgcaaaacccttgcca
cattccttacacttgcaaggtttgtttctactgtgtattctgtggtgggc
ttgaagatgtgagccctgggaaaaggacttgccacattctttacatttat
aagatttctctcctgtgtgggttttatgatgcctttgaagagaatagcta
ttagaaaaggacttgccgcaatctgtacatatgtaaggtttctctccagt
atggattctgtagtgggtttgaagatgggagtgctgagtaaaggacttgc
cacattctttacatttataagatttctctccagtatgggttctgtgatgt
gttcgaagacaggagctgctgataaaagccttgccacaatctgcacattt
gtaaggcttatctccagtatgaattctgctatgaacttgaagatttgatc
gtttggcaaaggacttcccacattctttacatttgtagggtttttctcca
gtatggattctgtggtgggatttaagagttgagccctcggcaaaagacct
gccacattctttacatttataagatttctctccagtatgggttttgtgat
gtgttcgaagacaggatcggctggtaaaggacttgccacaatctgcacat
ttgtaaggtctatctccggtatgaattctgctatgaccttgaagatttga
tcgtgtggcaaaggactttccacattctttacatttgtagggtttctctc
ctgtatggatcctgtggtgggatttaagagttgagccctcggcaaaagcc
ttgccacaatctgtacatttgtaaggtttctctccagtatgaagccttag
atgaatttgaagagagtagccatgagtaaaggacttgccacactctttac
attctgtatggtttctcaccagtggtggattctctgatgaggcttgcaga
tatgaacctgtagtaaagaccttttacattattttacatttataaggttt
ttccccagtatggattgtatattctctctgtagctggaggactgagaaaa
gggactttccacattctgtagattgcatggcggtcctccaggttgagcat
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49730765_49731299
seq2: B6Ng01-340I15.g_633_1168

seq1  TTATAAGCTTTCTCTCCAGTATGGGTTTTGTGATGTTTTCGAAGACAGAA  50
      ||||||| |||||||||||||||||||||||||||| ||||||||||| |
seq2  TTATAAGATTTCTCTCCAGTATGGGTTTTGTGATGTGTTCGAAGACAGGA  50

seq1  GCTCCTGGTAAAGGACTTGCCACAATCTGTACATTTGTAAGGTCTATCTC  100
       |  ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCGGCTGGTAAAGGACTTGCCACAATCTGCACATTTGTAAGGTCTATCTC  100

seq1  CAGTATGAATTCTGCTATGAGTTTCAAAATTTGATTGTTTGGCAAAGGAC  150
      | ||||||||||||||||||  || || ||||||| || |||||||||||
seq2  CGGTATGAATTCTGCTATGACCTTGAAGATTTGATCGTGTGGCAAAGGAC  150

seq1  TTTCCACATTCTTTACATTTGTAGGGTTTCTCTCCTGTATGGATTCTGTG  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCCACATTCTTTACATTTGTAGGGTTTCTCTCCTGTATGGATCCTGTG  200

seq1  GTGGGATTTAAGAGATGAGCCCTCGGCAAAAGACCTGCCACAATCTTTAC  250
      |||||||||||||| ||||||||||||||||| | ||||||||||| |||
seq2  GTGGGATTTAAGAGTTGAGCCCTCGGCAAAAGCCTTGCCACAATCTGTAC  250

seq1  ATTTGTAAGGTTTCTCTCCAGTATGAAACCTGTGATGAATTCGAAGAGAA  300
      ||||||||||||||||||||||||||| |||  |||||||| ||||||| 
seq2  ATTTGTAAGGTTTCTCTCCAGTATGAAGCCTTAGATGAATTTGAAGAGAG  300

seq1  TAGCCGTGAGTAAAGGACTTGCCACACTCTTTACATT-TATATGGTTTCT  349
      ||||| ||||||||||||||||||||||||||||||| | ||||||||||
seq2  TAGCCATGAGTAAAGGACTTGCCACACTCTTTACATTCTGTATGGTTTCT  350

seq1  CACCAGT-GTGGATTCTCTGATGA-GCTTGCAGATATGAACCTGTAGTAA  397
      ||||||| |||||||||||||||| ||||||||||||||||||||||| |
seq2  CACCAGTGGTGGATTCTCTGATGAGGCTTGCAGATATGAACCTGTAGT-A  399

seq1  AAGATCTTTTACA-TATTTTACATTTATAAGGTTTTTCTCCAGTATGGAT  446
      |||| |||||||| |||||||||||||||||||||||| |||||||||||
seq2  AAGACCTTTTACATTATTTTACATTTATAAGGTTTTTCCCCAGTATGGAT  449

seq1  TGTACCATTCTCTCTGTAGCCTGAGAACTGAGAAAA-GGACTTCCCACAT  495
      ||||  ||||||||||||||  ||| |||||||||| |||||| ||||||
seq2  TGTA-TATTCTCTCTGTAGCTGGAGGACTGAGAAAAGGGACTTTCCACAT  498

seq1  TCTGTAGATTTGCATGGCGTTCCTCCAGGTTGAAGCATCT  535
      |||||||| |||||||||| |||||||||||| |||||||
seq2  TCTGTAGA-TTGCATGGCGGTCCTCCAGGTTG-AGCATCT  536