BAC Information

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BAC

Clone NameB6Ng01-340J13
Chromosome7 (Build37)
Map Location 62,699,286 - 62,791,751
singlet/doubletdoublet
Overlap geneLOC668796
Upstream geneLOC622146, Luzp2
Downstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J13.bB6Ng01-340J13.g
ACCGA124249GA124250
length1,1421,164
definitionB6Ng01-340J13.b B6Ng01-340J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,790,621 - 62,791,751)(62,699,286 - 62,700,390)
sequence
gaattcagtagagttcacagagagcagaacagtagaggagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagagagaagagcagcacagagggaggaggcagttttccagggagat
ttttacaggagacagattaaaaagagaaaaagctagatacaaataaagcc
agaagaaccagcaagagaatgagaaggagccaggagattaggagagattt
ctagagttagttggaggccaagcagagcaattcagaggccaagagaaaag
gcagattaagtaagtcacctgggaaaggagtttgaggcagaacagctgag
ttgaaccagtgagtcagagctcacagaaagaactagaaagcgcaagctaa
ttcagcagtaagtctcagaggctgaaaacattctaggagtagattagatt
gtacagaggtgagaagcttccaggaataagcctcatagacaataattaca
gcagggaaataaatgtacacatatcaacatttccctgtctcttttctgca
tctgtaattcccgaataccctttgactcatgatctattctttgggctgct
ggtggtatagtgtgaaatagatctctcttttaaaaatcttctttcaaatg
tacttccagacttatatatcaatgaatctgtccacaagacacattttctc
tcaattaccccaattctaccacatgtcgtttctgtttttcactttgtttt
tgtaacacataatgtaatttaacacattacattctgtatttatgtattaa
cggtataaaacaaaattcacttgaaaccaagtaattcactattgtttttg
tcattgttttgcttttatacttctcacaagatttatttcctgtgactttt
aaatatatcaactttagtaattatttgagaatgtcatgacatgcatttct
atcatttgtatccccagtaatatgcctaaatcctcttagatctactccac
acttcttctaacgttgtgctttcttcttttaaataccattaatttacttt
aaataaactgtaattatatcagtcccatttccatttcctcccctcatttc
tcatctcttcccaatgccctttcctactttattttttctcaa
gaattctctctgggaaactttttcacagcagacttcctgatattctggat
ctagtattcttcctgtctcctctttcacaatattctctgagctatagagg
cagaaactgggtaatgtagatgtatctactgttgttatattccccgtgat
ctgtctatctctacatggtgtccatgtgtggtttcttgaatgacctcaat
ttgctacagagaaagtcttatttgatgagggatgctagccacacttcttt
atcaatacaagggtaagatgtagaacttagtaaggagttgtgctggttta
ttatagtggtggtagtatattctttctaatgcctatggcctccctagctc
caggaagttttcaatcccagacataactctccttctgtaaagtaagcctt
aactttaattatacagctgttggcttccagtgacatgtgaggttgactgt
tgcattgttatgtatatatttctgttctcatcattgtcatagtgcacagg
taatttaaccaagtagaactgctgatgtcttcccctctcttggcagcctg
gtaccgtagaagctagacagtgggatctttaacacaaggaaataacagag
gaatgccttgaataatgtactattctttcattggttctcagtgaagtata
ctgcatgtaactgcatgtggctaaaaactttccacctttactttatttct
ttgcatgttttgaaatcgagtttttgttataattatttccatagaggagt
ctgttcaaggagagagctcctgactatagatgcaacatagagagctgcca
gggtgatttcctctccacatgggctatgagtcaagaaaaaaacccttcct
tcctcaactctctttttcaggtatctgtcacataaaagaaaaaggcacct
ggaccaagacagggtatgcatatgtgacttcacagtatgcatacatatcg
tttgaaactgcatagtaaagaatagaaaacttgtatgaatttggtgttta
tactatgctgtgtccatcaatgtcttccttgtacatatacatcttctggt
cacattttatttctgtctcttaagactttgttggaatggagtctatttcc
ataatcattatcagaaagcttactaattataactgctccaaggttttact
tttaattaaggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62790621_62791751
seq2: B6Ng01-340J13.b_64_1189 (reverse)

seq1  TTGAGAAAAAAATAAAGTAAGAAAGGGCA-TGGGAAGAGATGAGAAATTG  49
      ||||| ||||||||||||| ||||||||| ||||||||||||||||| ||
seq2  TTGAG-AAAAAATAAAGTAGGAAAGGGCATTGGGAAGAGATGAGAAA-TG  48

seq1  GAGGGAGGAAATGGAAATGGGACTGATATAATTACAGTTTATTTAAAGTA  99
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAAATGGAAATGGGACTGATATAATTACAGTTTATTTAAAGTA  98

seq1  AATAAAATGGTATTTAAAAGGAAGAAAGCACAACGTTAGAAGAAGTGTGG  149
      |||  |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAT-TAATGGTATTTAAAA-GAAGAAAGCACAACGTTAGAAGAAGTGTGG  146

seq1  AGTAGATCTAAGAGGATTTAGGCATATTACTGGGGATACAAATGATAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTAAGAGGATTTAGGCATATTACTGGGGATACAAATGATAGAA  196

seq1  ATGCATGTCATGACATTCTCAAATAATTACTAAAGTTGATATATTTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCATGTCATGACATTCTCAAATAATTACTAAAGTTGATATA-TTTAAA  245

seq1  AGTCAACAGGAAATAAATCTTGTGAGAAGTATAAAAGCAAAACAATGACA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTC-ACAGGAAATAAATCTTGTGAGAAGTATAAAAGCAAAACAATGACA  294

seq1  AAAACAATAGTGAATTACTTGGTTTCAAGTGAATTTTGTTTTATACCGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAGTGAATTACTTGGTTTCAAGTGAATTTTGTTTTATACCGTT  344

seq1  AATACATAAATACAGAATGTAATGTGTTAAATTACATTATGTGTTACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATACAGAATGTAATGTGTTAAATTACATTATGTGTTACAAA  394

seq1  AACAAAGTGAAAAACAGAAACGACATGTGGTAGAATTGGGGTAATTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTGAAAAACAGAAACGACATGTGGTAGAATTGGGGTAATTGAGA  444

seq1  GAAAATGTGTCTTGTGGACAGATTCATTGATATATAAGTCTGGAAGTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGTCTTGTGGACAGATTCATTGATATATAAGTCTGGAAGTACA  494

seq1  TTTGAAAGAAGATTTTTAAAAGAGAGATCTATTTCACACTATACCACCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGAAGATTTTTAAAAGAGAGATCTATTTCACACTATACCACCAG  544

seq1  CAGCCCAAAGAATAGATCATGAGTCAAAGGGTATTCGGGAATTACAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAAGAATAGATCATGAGTCAAAGGGTATTCGGGAATTACAGATG  594

seq1  CAGAAAAGAGACAGGGAAATGTTGATATGTGTACATTTATTTCCCTGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAGACAGGGAAATGTTGATATGTGTACATTTATTTCCCTGCTG  644

seq1  TAATTATTGTCTATGAGGCTTATTCCTGGAAGCTTCTCACCTCTGTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTGTCTATGAGGCTTATTCCTGGAAGCTTCTCACCTCTGTACAA  694

seq1  TCTAATCTACTCCTAGAATGTTTTCAGCCTCTGAGACTTACTGCTGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTACTCCTAGAATGTTTTCAGCCTCTGAGACTTACTGCTGAATT  744

seq1  AGCTTGCGCTTTCTAGTTCTTTCTGTGAGCTCTGACTCACTGGTTCAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCGCTTTCTAGTTCTTTCTGTGAGCTCTGACTCACTGGTTCAACT  794

seq1  CAGCTGTTCTGCCTCAAACTCCTTTCCCAGGTGACTTACTTAATCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCTGCCTCAAACTCCTTTCCCAGGTGACTTACTTAATCTGCCT  844

seq1  TTTCTCTTGGCCTCTGAATTGCTCTGCTTGGCCTCCAACTAACTCTAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGGCCTCTGAATTGCTCTGCTTGGCCTCCAACTAACTCTAGAA  894

seq1  ATCTCTCCTAATCTCCTGGCTCCTTCTCATTCTCTTGCTGGTTCTTCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCTAATCTCCTGGCTCCTTCTCATTCTCTTGCTGGTTCTTCTGG  944

seq1  CTTTATTTGTATCTAGCTTTTTCTCTTTTTAATCTGTCTCCTGTAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGTATCTAGCTTTTTCTCTTTTTAATCTGTCTCCTGTAAAAAT  994

seq1  CTCCCTGGAAAACTGCCTCCTCCCTCTGTGCTGCTCTTCTCTCTCTCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGAAAACTGCCTCCTCCCTCTGTGCTGCTCTTCTCTCTCTCTCT  1044

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1094

seq1  CTCTCTCTCTCCTCTACTGTTCTGCTCTCTGT  1131
      ||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCCTCTACTGTTCTGCTCTCTGT  1126

seq1: chr7_62699286_62700390
seq2: B6Ng01-340J13.g_138_1231

seq1  TCTTTCACAATATTCTCTGAGCTATAGAGGCAGAAACTGGGTAATGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACAATATTCTCTGAGCTATAGAGGCAGAAACTGGGTAATGTAGA  50

seq1  TGTATCTACTGTTGTTATATTCCCCGTGATCTGTCTATCTCTACATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTACTGTTGTTATATTCCCCGTGATCTGTCTATCTCTACATGGTG  100

seq1  TCCATGTGTGGTTTCTTGAATGACCTCAATTTGCTACAGAGAAAGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGTGGTTTCTTGAATGACCTCAATTTGCTACAGAGAAAGTCTTA  150

seq1  TTTGATGAGGGATGCTAGCCACACTTCTTTATCAATACAAGGGTAAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAGGGATGCTAGCCACACTTCTTTATCAATACAAGGGTAAGATG  200

seq1  TAGAACTTAGTAAGGAGTTGTGCTGGTTTATTATAGTGGTGGTAGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTAGTAAGGAGTTGTGCTGGTTTATTATAGTGGTGGTAGTATAT  250

seq1  TCTTTCTAATGCCTATGGCCTCCCTAGCTCCAGGAAGTTTTCAATCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATGCCTATGGCCTCCCTAGCTCCAGGAAGTTTTCAATCCCAG  300

seq1  ACATAACTCTCCTTCTGTAAAGTAAGCCTTAACTTTAATTATACAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTCTCCTTCTGTAAAGTAAGCCTTAACTTTAATTATACAGCTGT  350

seq1  TGGCTTCCAGTGACATGTGAGGTTGACTGTTGCATTGTTATGTATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCAGTGACATGTGAGGTTGACTGTTGCATTGTTATGTATATATT  400

seq1  TCTGTTCTCATCATTGTCATAGTGCACAGGTAATTTAACCAAGTAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCATCATTGTCATAGTGCACAGGTAATTTAACCAAGTAGAACT  450

seq1  GCTGATGTCTTCCCCTCTCTTGGCAGCCTGGTACCGTAGAAGCTAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTCTTCCCCTCTCTTGGCAGCCTGGTACCGTAGAAGCTAGACAG  500

seq1  TGGGATCTTTAACACAAGGAAATAACAGAGGAATGCCTTGAATAATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTTTAACACAAGGAAATAACAGAGGAATGCCTTGAATAATGTAC  550

seq1  TATTCTTTCATTGGTTCTCAGTGAAGTATACTGCATGTAACTGCATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCATTGGTTCTCAGTGAAGTATACTGCATGTAACTGCATGTGG  600

seq1  CTAAAAACTTTCCACCTTTACTTTATTTCTTTGCATGTTTTGAAATCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACTTTCCACCTTTACTTTATTTCTTTGCATGTTTTGAAATCGAG  650

seq1  TTTTTGTTATAATTATTTCCATAGAGGAGTCTGTTCAAGGAGAGAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTATAATTATTTCCATAGAGGAGTCTGTTCAAGGAGAGAGCTCC  700

seq1  TGACTATAGATGCAACATAGAGAGCTGCCAGGGTGATTTCCTCTCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATAGATGCAACATAGAGAGCTGCCAGGGTGATTTCCTCTCCACAT  750

seq1  GGGCTATGAGTCAAGAAAAAAACCCTTCCTTCCTCAACTCTCTTTTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATGAGTCAAGAAAAAAACCCTTCCTTCCTCAACTCTCTTTTTCAG  800

seq1  GTATCTGTCACATAAAAGAAAAAGGCACCTGGGACCAAGACAGGGTATGC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATCTGTCACATAAAAGAAAAAGGCACCT-GGACCAAGACAGGGTATGC  849

seq1  ATATGTGACTTCACAGTATGCATACATATCGTTTGAAACTGCATAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGACTTCACAGTATGCATACATATCGTTTGAAACTGCATAGTAAA  899

seq1  GAATAGAAAAACTTGTAATGAATTTGGTGTTTATACTATGCTGTGTCCAT  950
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATAG-AAAACTTGT-ATGAATTTGGTGTTTATACTATGCTGTGTCCAT  947

seq1  CAAATGTCTTTCCTTGTACATATAACATCTTCTGGTCACATTTTA-TTCT  999
      | |||||| |||||||||||||| ||||||||||||||||||||| ||||
seq2  C-AATGTC-TTCCTTGTACATAT-ACATCTTCTGGTCACATTTTATTTCT  994

seq1  GTCTCTAAAGACTTTGTTGAAAT-GAGTCTA-TTCCAT-ATCATTAATTC  1046
      |||||| |||||||||||| ||| ||||||| |||||| |||||||  ||
seq2  GTCTCTTAAGACTTTGTTGGAATGGAGTCTATTTCCATAATCATTA--TC  1042

seq1  AGAAACCTTACCTATAATTATAACTGCCTCCAAAGTTTTTACTTTTTAAT  1096
      ||||| |||||   |||||||||||| |||| ||| ||||||||||  | 
seq2  AGAAAGCTTAC---TAATTATAACTG-CTCC-AAGGTTTTACTTTT--AA  1085

seq1  TTAAGGTGA  1105
      |||||||||
seq2  TTAAGGTGA  1094