BAC Information

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BAC

Clone NameB6Ng01-340N04
Chromosome7 (Build37)
Map Location 55,245,357 - 55,411,852
singlet/doubletdoublet
Overlap geneMrgprx1, Mrgprb7-ps, Mrgprb12-ps, EG270335
Upstream geneSpty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4
Downstream geneMrgprb5, Mrgprb4, Mrgprb13, Mrgprb8, Mrgprb1, Mrgprx2, Mrgprb2, Mrgprb9-ps, Mrgprb3, EG639116, Zdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N04.bB6Ng01-340N04.g
ACCGA124400GA124401
length1,032210
definitionB6Ng01-340N04.b B6Ng01-340N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,410,821 - 55,411,852)(55,245,357 - 55,245,566)
sequence
gaattctatccccagaaggctgcctagatttctagtactagacatgattt
cccttttgtcatctgagctttaaatccaacagagagctgttggttgtcac
tgacatgtgactctgtttatatttttattgatatcatgccattctggtaa
ttttcatgattcatgggtattgaaggttggtaggatgttttaatgcttcc
tccccttggcagcaggtatagtattctgggaccataaataaatgactttt
ctggaagtcaggctacaagaaagaggtcagatcattgctgaatcacctca
gtcttttgtcctaaatgttaggtgtttccatcaatgggatccaccttcaa
ccaaaggttacatcgataatctatattgctttggtaatcacagggaatgc
tctggctaatcattcaaagaaagatttctcatgccttgaactgctccttt
tgaagattattatcagcccaagtggcttaactttaagacatgtgaatatg
aacatatgtgtgtatgcatgtataataaacattattctatttcccatttc
ccattgtctatatcctgctattacttccctatcccccaacatatggaatt
ttatattttcctggtttgttacatgacacatatgtatatctgaggatttt
gaactaggaactacaaataaaagagaccttgtagaatttgtctttctgga
caggactccatttgcaaagaaattgaggcaaacaattgataagtaggtca
tcataaaaccaaaacacttcttcacagctaagaaacaatcagccaagtaa
agaagaaataaacagaatggggagatgaactctgccagttatacgtctgg
caaaggattagtactcagaacatataaagaattccaaaaacaaagaacaa
agagccatttaccatttgaaaaatgggcctgggacataacagggagatta
tcagagataaataaaaatgcgaataaatctgaaagttattatcatcctta
gcaatagaaaaattgcaaactaaaacaggttt
atggtcacccacgagcaccacagactcccaagagatcctacatcttagag
gaagaaagatagctccaaataccagagtccagcagggaaggatttcacaa
gaggaatagttgaacagatggaagctagtaagagtaatgtattaagtaaa
ccagaaagcttgaaagattagtgtgtgtgtgtttgcgtgtgtgtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_55410821_55411852
seq2: B6Ng01-340N04.b_48_1072 (reverse)

seq1  TTTTAGTTTGCAATTTTTCTATTGCTAAGGATGATAAATAACTTTTCAAG  50
      ||||||||||||||||||||||||||||||||||| |||||||||   ||
seq2  TTTTAGTTTGCAATTTTTCTATTGCTAAGGATGAT-AATAACTTT--CAG  47

seq1  ATTTTATTCGCAATTTTTATTTATTCTCTGAATATCTCCCTGTTTATGTC  100
      | ||||||||| ||||||||||| |||||||  ||||||||| |||||||
seq2  A-TTTATTCGC-ATTTTTATTTA-TCTCTGATAATCTCCCTG-TTATGTC  93

seq1  CCAGGCCCATTTTTCAAATGGTAAATTGGCTCTTTGTTCTTTGTTTTTGG  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAGGCCCATTTTTCAAATGGTAAA-TGGCTCTTTGTTCTTTGTTTTTGG  142

seq1  AATTCTTTATATGTTCTGAGTACTAATCCTTTGCCAGACGTATAACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATATGTTCTGAGTACTAATCCTTTGCCAGACGTATAACTGGC  192

seq1  AGAGTTCATCT-CCCATTCTGTTTATTTCTTCTTTACTTGGCTGATTGTT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCATCTCCCCATTCTGTTTATTTCTTCTTTACTTGGCTGATTGTT  242

seq1  TCTTAGCTGTGAAGAAGTGTTTTGGTTTTATGATGACCTACTTATCAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTGTGAAGAAGTGTTTTGGTTTTATGATGACCTACTTATCAATT  292

seq1  GTTTGCCTCAATTTCTTTGCAAATGGAGTCCTGTCCAGAAAGACAAATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTCAATTTCTTTGCAAATGGAGTCCTGTCCAGAAAGACAAATTC  342

seq1  TACAAGGTCTCTTTTATTTGTAGTTCCTAGTTCAAAATCCTCAGATATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTCTCTTTTATTTGTAGTTCCTAGTTCAAAATCCTCAGATATAC  392

seq1  ATATGTGTCATGTAACAAACCAGGAAAATATAAAATTCCATATGTTGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCATGTAACAAACCAGGAAAATATAAAATTCCATATGTTGGGG  442

seq1  GATAGGGAAGTAATAGCAGGATATAGACAATGGGAAATGGGAAATAGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGAAGTAATAGCAGGATATAGACAATGGGAAATGGGAAATAGAAT  492

seq1  AATGTTTATTATACATGCATACACACATATGTTCATATTCACATGTCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATTATACATGCATACACACATATGTTCATATTCACATGTCTTA  542

seq1  AAGTTAAGCCACTTGGGCTGATAATAATCTTCAAAAGGAGCAGTTCAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGCCACTTGGGCTGATAATAATCTTCAAAAGGAGCAGTTCAAGG  592

seq1  CATGAGAAATCTTTCTTTGAATGATTAGCCAGAGCATTCCCTGTGATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAATCTTTCTTTGAATGATTAGCCAGAGCATTCCCTGTGATTAC  642

seq1  CAAAGCAATATAGATTATCGATGTAACCTTTGGTTGAAGGTGGATCCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATATAGATTATCGATGTAACCTTTGGTTGAAGGTGGATCCCAT  692

seq1  TGATGGAAACACCTAACATTTAGGACAAAAGACTGAGGTGATTCAGCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAACACCTAACATTTAGGACAAAAGACTGAGGTGATTCAGCAAT  742

seq1  GATCTGACCTCTTTCTTGTAGCCTGACTTCCAGAAAAGTCATTTATTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACCTCTTTCTTGTAGCCTGACTTCCAGAAAAGTCATTTATTTAT  792

seq1  GGTCCCAGAATACTATACCTGCTGCCAAGGGGAGGAAGCATTAAAACATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGAATACTATACCTGCTGCCAAGGGGAGGAAGCATTAAAACATC  842

seq1  CTACCAACCTTCAATACCCATGAATCATGAAAATTACCAGAATGGCATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACCTTCAATACCCATGAATCATGAAAATTACCAGAATGGCATGA  892

seq1  TATCAATAAAAATATAAACAGAGTCACATGTCAGTGACAACCAACAGCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAAAAATATAAACAGAGTCACATGTCAGTGACAACCAACAGCTC  942

seq1  TCTGTTGGATTTAAAGCTCAGATGACAAAAGGGAAATCATGTCTAGTACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGATTTAAAGCTCAGATGACAAAAGGGAAATCATGTCTAGTACT  992

seq1  AGAAATCTAGGCAGCCTTCTGGGGATAGAATTC  1032
      |||||||||||||||||||||||||||||||||
seq2  AGAAATCTAGGCAGCCTTCTGGGGATAGAATTC  1025

seq1: chr7_55245357_55245566
seq2: B6Ng01-340N04.g_74_283

seq1  ATGGTCACCCACGAGCACCACAGACTCCCAAGAGATCCTACATCTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCCACGAGCACCACAGACTCCCAAGAGATCCTACATCTTAGAG  50

seq1  GAAGAAAGATAGCTCCAAATACCAGAGTCCAGCAGGGAAGGATTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGATAGCTCCAAATACCAGAGTCCAGCAGGGAAGGATTTCACAA  100

seq1  GAGGAATAGTTGAACAGATGGAAGCTAGTAAGAGTAATGTATTAAGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAGTTGAACAGATGGAAGCTAGTAAGAGTAATGTATTAAGTAAA  150

seq1  CCAGAAAGCTTGAAAGATTAGTGTGTGTGTGTTTGCGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCTTGAAAGATTAGTGTGTGTGTGTTTGCGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGT  210
      ||||||||||
seq2  GTGTGTGTGT  210