BAC Information

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BAC

Clone NameB6Ng01-340O19
Chromosome7 (Build37)
Map Location 25,061,028 - 25,175,495
singlet/doubletdoublet
Overlap geneZfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4
Upstream geneEG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108
Downstream gene1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340O19.bB6Ng01-340O19.g
ACCGA124468GA124469
length1,0921,139
definitionB6Ng01-340O19.b B6Ng01-340O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,174,399 - 25,175,495)(25,061,028 - 25,062,157)
sequence
gaattccaggccagcctgggtttacgtagtaagatttgtctttaaaatcc
aaataagacatctacagagctagctcagttggtaaagagcttactgtgtg
agccagaggaacttagtctggtcaccagagcccacgtacagaagccagat
acgagtcttgtaatcctgtcactggggagccagaggcagggactcactat
ccagctgacataatctcactagcaagctccaggccagtgagagaccctgg
ctaaaacaaaacaaaaacgaaggtaggttgtccctgaaggttgaccttga
ggttgacctccgaattctgcacaaaccagcacacacacacacacacacac
acacacacactcagagctgacactatgtatcagtggtagagcccctgtct
agaatcccccaatgaggggctgggggtgtggttcaagtcctagaatgttg
cctagaattgcatctaatagtgagggtggagatagagtgtaacagtagcc
tgccgtctagggcgtatgtcttcagttcggcctccagtaccacacagtaa
ctaggaaacagaggaagagctttgcctgtgctaagccttgacagaaaagg
ctgtggaagccacaagccacggtgcattttgagcagggaggggtgcaatt
gggctggatgttaggaaagtcctcagggactcagtgtggtatacattaag
gagggagactggccctcgctcccctgttactcctctctgagccctgttcc
cctccacgcgcccccacatccttgtgggagtgcaggcagaagtgaaatga
gagagggaagtaactcaagtagccaggcagagccttggaggtcagcagcc
tctgactcaacgtccgtcccagctcagctcttgcctggcgctgggctttt
cggaagcattgatttgatgacagggaaggggaatgctactgggtgtcagt
ctgagcccccactgagatcagggacaggttgacagggacagatcccagat
acacggggatttgggatctcttgtgcacttctgtgttcatcaaagcccca
tgttctgtcaaaaccactaaaagaatgtgcacatggagtgtg
gaattcacactggggaaaaaccgtatagatgtgaagtgtgtgggaagcgc
ttcccctggagcttgagccttcatagtcaccagagtgtgcacacaggaaa
gaaaccgtataaatgtggggagtgtgggaaaggcttcagtcatgcctcca
gtctgcaggcccatcacagtgtccacaccggtgaaaaaccattcaaatgc
aatgtttgccagaagcagttcagcaagacctcaaacctccaggcccacca
gagggttcacacaggggagaagccctacaaatgcgacacgtgtgggaaag
ccttcagccagaagtccagtctccaagtccatcagagaattcacactggg
gagaagccgttcaagtgtgaggagtgtgggaaggaattcagatggagcgt
ggggctgagttctcaccagagggtccacacaggagagaaaccctacacgt
gtcagcagtgtgggaaaggtttcagtcaggcctcatatttccatatgcac
cagagggtccacactatatagagaccttaaatcggccatatttgctgtag
gggctatagtcagagatcacatcttgtcttccaccagagaatccacactg
catggaatctttagtttctgctgtcaggtgggctcttggctgatgattgt
taaaagtatccccaacacgcagagtcttcaggagacttcataggagcttt
attttggtatttttgccctcaacttattctcctactgtactcattatgca
aagggaagagagtattttagaatggatctttcttagcatataaataaaag
aattaaacgtatatagaaaaggattctgatttaattataaaaggaaacat
tggcaattgtgaggaacaggccccacaggaattgtagggcattcatacta
atgctgatattatattcattatgggtaatcaataaggatttggccaagag
cttgtagcaactgataggagatttaacaactttcctaaaaccaattgact
tcagtttatacaaaagttattggattcactccaatattgtaaagagaaca
tccaatttcctggagccgttacattttatccttaatgtccataagctgaa
ctgcctaggctattagttcagaaaaaacttaatcgaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25174399_25175495
seq2: B6Ng01-340O19.b_44_1135 (reverse)

seq1  CACACT-CATGTGCACATCTTTTTTAGTGGTTTTGACAGAAACATGGGGG  49
      |||||| ||||||||||| | |||||||||||||||||| ||||||||| 
seq2  CACACTCCATGTGCACAT-TCTTTTAGTGGTTTTGACAG-AACATGGGG-  47

seq1  CTTTTGATGAACAACAAGAGTTCCCACAAGAGATCCCAAATCCCCGTGTA  99
        |||||||||| |||  |||   ||||||||||||||||||||||||||
seq2  -CTTTGATGAAC-ACAGAAGT--GCACAAGAGATCCCAAATCCCCGTGTA  93

seq1  TCTTGGATCTGTCCCTGTCAACCTGTCCCTGATCTCAGT-GGGGCTCAGA  148
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGGGATCTGTCCCTGTCAACCTGTCCCTGATCTCAGTGGGGGCTCAGA  143

seq1  CCTGACACCCAGTAGCATTCCCCTTCCCTGTCATCAAATCAATGCTTCCG  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGACACCCAGTAGCATTCCCCTTCCCTGTCATCAAATCAATGCTTCCG  192

seq1  AAAAGCCCAGCGCCAGGCAAGAGCTGAGCTGGGACGGACGTTGAGTCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCAGCGCCAGGCAAGAGCTGAGCTGGGACGGACGTTGAGTCAGA  242

seq1  GGCTGCTGACCTCCAAGGCTCTGCCTGGCTACTTGAGTTACTTCCCTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGACCTCCAAGGCTCTGCCTGGCTACTTGAGTTACTTCCCTCTC  292

seq1  TCATTTCACTTCTGCCTGCACTCCCACAAGGATGTGGGGGCGCGTGGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTTCTGCCTGCACTCCCACAAGGATGTGGGGGCGCGTGGAGG  342

seq1  GGAACAGGGCTCAGAGAGGAGTAAC-GGGGAGCGAGGGCCAGTCTCCCTC  397
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAACAGGGCTCAGAGAGGAGTAACAGGGGAGCGAGGGCCAGTCTCCCTC  392

seq1  CTTAATGTATACCACACTGAGTCCCTGAGGACTTTCCTAACATCCAGCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTATACCACACTGAGTCCCTGAGGACTTTCCTAACATCCAGCCC  442

seq1  AATTGCACCCCTCCCTGCTCAAAATGCACCGTGGCTTGTGGCTTCCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACCCCTCCCTGCTCAAAATGCACCGTGGCTTGTGGCTTCCACAG  492

seq1  CCTTTTCTGTCAAGGCTTAGCACAGGCAAAGCTCTTCCTCTGTTTCCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTCAAGGCTTAGCACAGGCAAAGCTCTTCCTCTGTTTCCTAG  542

seq1  TTACTGTGTGGTACTGGAGGCCGAACTGAAGACATACGCCCTAGACGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTGGTACTGGAGGCCGAACTGAAGACATACGCCCTAGACGGCA  592

seq1  GGCTACTGTTACACTCTATCTCCACCCTCACTATTAGATGCAATTCTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGTTACACTCTATCTCCACCCTCACTATTAGATGCAATTCTAGG  642

seq1  CAACATTCTAGGACTTGAACCACACCCCCAGCCCCTCATTGGGGGATTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTAGGACTTGAACCACACCCCCAGCCCCTCATTGGGGGATTCT  692

seq1  AGACAGGGGCTCTACCACTGATACATAGTGTCAGCTCTGAGTGTGTGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGGCTCTACCACTGATACATAGTGTCAGCTCTGAGTGTGTGTGT  742

seq1  GTGTGTGTGTGTGTGTGTGTGCTGGTTTGTGCAGAATTCGGAGGTCAACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGCTGGTTTGTGCAGAATTCGGAGGTCAACC  792

seq1  TCAAGGTCAACCTTCAGGGACAACCTACCTTCGTTTTTGTTTTGTTTTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCAACCTTCAGGGACAACCTACCTTCGTTTTTGTTTTGTTTTAG  842

seq1  CCAGGGTCTCTCACTGGCCTGGAGCTTGCTAGTGAGATTATGTCAGCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTCTCACTGGCCTGGAGCTTGCTAGTGAGATTATGTCAGCTGG  892

seq1  ATAGTGAGTCCCTGCCTCTGGCTCCCCAGTGACAGGATTACAAGACTCGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGTCCCTGCCTCTGGCTCCCCAGTGACAGGATTACAAGACTCGT  942

seq1  ATCTGGCTTCTGTACGTGGGCTCTGGTGACCAGACTAAGTTCCTCTGGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTCTGTACGTGGGCTCTGGTGACCAGACTAAGTTCCTCTGGCT  992

seq1  CACACAGTAAGCTCTTTACCAACTGAGCTAGCTCTGTAGATGTCTTATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTAAGCTCTTTACCAACTGAGCTAGCTCTGTAGATGTCTTATTT  1042

seq1  GGATTTTAAAGACAAATCTTACTACGTAAACCCAGGCTGGCCTGGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTAAAGACAAATCTTACTACGTAAACCCAGGCTGGCCTGGAATTC  1092

seq1: chr7_25061028_25062157
seq2: B6Ng01-340O19.g_68_1206

seq1  GAATTCACACTGGGGAAAAACCGTATAGATGTGAAGTGTGTGGGAAGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGGGAAAAACCGTATAGATGTGAAGTGTGTGGGAAGCGC  50

seq1  TTCCCCTGGAGCTTGAGCCTTCATAGTCACCAGAGTGTGCACACAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGGAGCTTGAGCCTTCATAGTCACCAGAGTGTGCACACAGGAAA  100

seq1  GAAACCGTATAAATGTGGGGAGTGTGGGAAAGGCTTCAGTCATGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGTATAAATGTGGGGAGTGTGGGAAAGGCTTCAGTCATGCCTCCA  150

seq1  GTCTGCAGGCCCATCACAGTGTCCACACCGGTGAAAAACCATTCAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGGCCCATCACAGTGTCCACACCGGTGAAAAACCATTCAAATGC  200

seq1  AATGTTTGCCAGAAGCAGTTCAGCAAGACCTCAAACCTCCAGGCCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGCCAGAAGCAGTTCAGCAAGACCTCAAACCTCCAGGCCCACCA  250

seq1  GAGGGTTCACACAGGGGAGAAGCCCTACAAATGCGACACGTGTGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCACACAGGGGAGAAGCCCTACAAATGCGACACGTGTGGGAAAG  300

seq1  CCTTCAGCCAGAAGTCCAGTCTCCAAGTCCATCAGAGAATTCACACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCAGAAGTCCAGTCTCCAAGTCCATCAGAGAATTCACACTGGG  350

seq1  GAGAAGCCGTTCAAGTGTGAGGAGTGTGGGAAGGAATTCAGATGGAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCGTTCAAGTGTGAGGAGTGTGGGAAGGAATTCAGATGGAGCGT  400

seq1  GGGGCTGAGTTCTCACCAGAGGGTCCACACAGGAGAGAAACCCTACACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGTTCTCACCAGAGGGTCCACACAGGAGAGAAACCCTACACGT  450

seq1  GTCAGCAGTGTGGGAAAGGTTTCAGTCAGGCCTCATATTTCCATATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGTGTGGGAAAGGTTTCAGTCAGGCCTCATATTTCCATATGCAC  500

seq1  CAGAGGGTCCACACTATATAGAGACCTTAAATCGGCCATATTTGCTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTCCACACTATATAGAGACCTTAAATCGGCCATATTTGCTGTAG  550

seq1  GGGCTATAGTCAGAGATCACATCTTGTCTTCCACCAGAGAATCCACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATAGTCAGAGATCACATCTTGTCTTCCACCAGAGAATCCACACTG  600

seq1  CATGGAATCTTTAGTTTCTGCTGTCAGGTGGGCTCTTGGCTGATGATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATCTTTAGTTTCTGCTGTCAGGTGGGCTCTTGGCTGATGATTGT  650

seq1  TAAAAGTATCCCCAACACGCAGAGTCTTCAGGAGACTTCATAGGAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATCCCCAACACGCAGAGTCTTCAGGAGACTTCATAGGAGCTTT  700

seq1  ATTTTGGTATTTTTGCCCTCAACTTATTCTCCTACTGTACTCATTATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTATTTTTGCCCTCAACTTATTCTCCTACTGTACTCATTATGCA  750

seq1  AAGGGAAGAGAGTATTTTAGAATGGATC-TTCTTAGCATATAAATAAAAG  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGGAAGAGAGTATTTTAGAATGGATCTTTCTTAGCATATAAATAAAAG  800

seq1  AATTAAACGTATATAGAAAAGGATTCTGATTTAATTATAAAAGGAAACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACGTATATAGAAAAGGATTCTGATTTAATTATAAAAGGAAACAT  850

seq1  TGGCAATTGTGAGGAACAGGCCCAACAGGAATTGTAGGGCA-TCATACTA  898
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TGGCAATTGTGAGGAACAGGCCCCACAGGAATTGTAGGGCATTCATACTA  900

seq1  ATGCTGATATTATA-TCATTATGGGTAATCAATAAAGA-TTGGCAAAGAG  946
      |||||||||||||| |||||||||||||||||||| || ||||| |||||
seq2  ATGCTGATATTATATTCATTATGGGTAATCAATAAGGATTTGGCCAAGAG  950

seq1  CTTGTAGCAACTGATAGGAGAATTTAACAACTATCCTAAAACCAAATGAC  996
      |||||||||||||||||||| ||||||||||| |||||||||||| ||||
seq2  CTTGTAGCAACTGATAGGAG-ATTTAACAACTTTCCTAAAACCAATTGAC  999

seq1  TTCAGTTTATAC-AAAGTAATTGGATTCAC-CCCATATTGTAAAGAGAAC  1044
      |||||||||||| ||||| ||||||||||| || ||||||||||||||||
seq2  TTCAGTTTATACAAAAGTTATTGGATTCACTCCAATATTGTAAAGAGAAC  1049

seq1  ATC--AATTCCTGGAGCCCTTACATTTTATAC-TAATGTCAATAAGTTGG  1091
      |||  | ||||||||||| ||||||||||| | ||||||| ||||| | |
seq2  ATCCAATTTCCTGGAGCCGTTACATTTTATCCTTAATGTCCATAAGCT-G  1098

seq1  AAATGGCTAG--TTATAATTCAGAAAAAACATAATCAAAGT  1130
      || || ||||  |  || |||||||||||| ||||| ||||
seq2  AACTGCCTAGGCTATTAGTTCAGAAAAAACTTAATCGAAGT  1139