BAC Information

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BAC

Clone NameB6Ng01-341C18
Chromosome7 (Build37)
Map Location 142,461,593 - 142,614,977
singlet/doubletdoublet
Overlap geneLOC100043254, Foxi2
Upstream gene4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693
Downstream geneClrn3, Ptpre, Mki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341C18.bB6Ng01-341C18.g
ACCGA124640GA124641
length1,113610
definitionB6Ng01-341C18.b B6Ng01-341C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,461,593 - 142,462,690)(142,614,368 - 142,614,977)
sequence
gaattctttcttctgaagtatgtggagacctcctgggccacaaggtggtg
tctctcctttcactgtgttgacctatttctagctttgcttatgagaatgc
ttttcctgttacggacaggtaatgtcatgaacggggttcgtgacaactcg
actgttcagggtgagcgatggtgctgtctaatcacagaggatttcatcat
ttggttcagagattcatgatgcccattagctgggcaggtgcacagtggta
tcctcatgatgagttggcgcagctgcctccagatcagccaagtacatgga
ggtctctttagggatgacttaagggtctcgtaaccggaactggcaccttt
cgggttccatagagatggccacatgagtgtttctggaaacagtcagttgt
ttcctttctgcagtgtggcgtaggtcactctggctagagatttaaaatgt
gcagcaatggtctatcatgttaacacaggggaaaacagaggaatgaaact
catacctctcgattgttttttttttttaccataaccaatatttatgaaac
catctttgactattcccagatcaaatagaacacacacatacacacacacg
aacacactcacacagagagagagagacagagagagacagagagagagaga
cagagagggagacagagagagagagacagagagagagacggagacgaaga
tgggcgacggagacagagacagagatggagtcaggcagacacagacagtt
tatggagacacaaaagacagtagcagagagacacagagagaggatacaca
tcttcttcccccagggacattgctaaggtttgcttgggtgccagagcaaa
gagttccagagatctgatgctttgcatggcttatccccaacccccaaaca
gacttagtcaaggcaaactttgcctcctccaccaaccagcaagaggtggt
aaagtccttaccttcatgctatgtcctcttccacttcaataaaatgccta
aggcctattggtcctactggcgccgagaacaggtcttggagtcagaacac
tggtgaaaagcgttatctgcaagcacgtgtcctccctccctctacttaag
accttggggagtc

gaattctgcctggaggaagaggtataggctgcaggtagtaaagggcacag
tcctgcaccaggggggtgaaattgagttccagttctcctgccttctagtt
gtgtggtttcacggcatgcctctgactcagtttctccatcttcaaaagaa
aataataatatctcactattttcaggattgttggaagaatggtgtgtatt
taagatgcaaacatagattagataaatgtcagctatttgaaaattgaacc
tcaaagaaaagccacaccatttataaaatctcagaggcacacatgtgacc
cagagactaaaattcaggaatggataagccatgtgaaaccaatcttgact
cagaaaaatataatttcttttttgaatttttttcattttttaaactaaag
ctttatcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacc
tcatgtgcatgcagctgcctgttggggccagaagaaagcattggatgctc
aggagctgaagttgtagattgtagttacctgatatgggtgctaggaacta
aacttaggtcctctggaagagcaggaagcactcaaatgctgagccacctc
tccagcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_142461593_142462690
seq2: B6Ng01-341C18.b_41_1153

seq1  GAATTCTTTCTTCTGAAGTATGTGGAGACCTCCTGGGCCACAAGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCTGAAGTATGTGGAGACCTCCTGGGCCACAAGGTGGTG  50

seq1  TCTCTCCTTTCACTGTGTTGACCTATTTCTAGCTTTGCTTATGAGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTTCACTGTGTTGACCTATTTCTAGCTTTGCTTATGAGAATGC  100

seq1  TTTTCCTGTTACGGACAGGTAATGTCATGAACGGGGTTCGTGACAACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTTACGGACAGGTAATGTCATGAACGGGGTTCGTGACAACTCG  150

seq1  ACTGTTCAGGGTGAGCGATGGTGCTGTCTAATCACAGAGGATTTCATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGGGTGAGCGATGGTGCTGTCTAATCACAGAGGATTTCATCAT  200

seq1  TTGGTTCAGAGATTCATGATGCCCATTAGCTGGGCAGGTGCACAGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGAGATTCATGATGCCCATTAGCTGGGCAGGTGCACAGTGGTA  250

seq1  TCCTCATGATGAGTTGGCGCAGCTGCCTCCAGATCAGCCAAGTACATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGATGAGTTGGCGCAGCTGCCTCCAGATCAGCCAAGTACATGGA  300

seq1  GGTCTCTTTAGGGATGACTTAAGGGTCTCGTAACCGGAACTGGCACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTAGGGATGACTTAAGGGTCTCGTAACCGGAACTGGCACCTTT  350

seq1  CGGGTTCCATAGAGATGGCCACATGAGTGTTTCTGGAAACAGTCAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTCCATAGAGATGGCCACATGAGTGTTTCTGGAAACAGTCAGTTGT  400

seq1  TTCCTTTCTGCAGTGTGGCGTAGGTCACTCTGGCTAGAGATTTAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTGCAGTGTGGCGTAGGTCACTCTGGCTAGAGATTTAAAATGT  450

seq1  GCAGCAATGGTCTATCATGTTAACACAGGGGAAAACAGAGGAATGAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATGGTCTATCATGTTAACACAGGGGAAAACAGAGGAATGAAACT  500

seq1  CATACCTCTCGATTGTTTTTTTTTTTTACCATAACCAATATTTATGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCTCGATTGTTTTTTTTTTTTACCATAACCAATATTTATGAAAC  550

seq1  CATCTTTGACTATTCCCAGATCAAATAGAACACACACATACACACACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGACTATTCCCAGATCAAATAGAACACACACATACACACACACG  600

seq1  AACACACTCACACAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTCACACAGAGAGAGAGAGACAGAGAGAGACAGAGAGAGAGAGA  650

seq1  CAGAGAGGGAGACAGAGAGAGAGAGACAGAGAGAGAGACGGAGACGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAGACAGAGAGAGAGAGACAGAGAGAGAGACGGAGACGAAGA  700

seq1  T-GGCGACGGAGACAGAGACAGAGATGGAGTCAGGCAGACACAGACAG-T  748
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGGCGACGGAGACAGAGACAGAGATGGAGTCAGGCAGACACAGACAGTT  750

seq1  TATGGAGACAC-AAAGACAGTAGCAGAGAGACACAGAGAGAGGATACACA  797
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGACACAAAAGACAGTAGCAGAGAGACACAGAGAGAGGATACACA  800

seq1  TCTTCTTCCCCCAGGGACATTGCAAAGGTTTGCTTGGGTGCCAGAGCAAA  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTCTTCCCCCAGGGACATTGCTAAGGTTTGCTTGGGTGCCAGAGCAAA  850

seq1  GAGTTCCAGAGAATCTGATGCTTTGCAAGGCTTA-CCCCAACCCCCAAAC  896
      ||||||||||| ||||||||||||||| |||||| |||||||||||||||
seq2  GAGTTCCAGAG-ATCTGATGCTTTGCATGGCTTATCCCCAACCCCCAAAC  899

seq1  AGACTTAGTCAAGGCAAAC-TTGCCTCCTCCACCAAACAGCAAGAGGTG-  944
      ||||||||||||||||||| |||||||||||||||| |||||||||||| 
seq2  AGACTTAGTCAAGGCAAACTTTGCCTCCTCCACCAACCAGCAAGAGGTGG  949

seq1  -TAAGT-CTTA-CTTCATGCTATGT-CTCTTCACTTTCAATAAAATGCTT  990
        |||| |||| ||||||||||||| ||||||   ||||||||||||| |
seq2  TAAAGTCCTTACCTTCATGCTATGTCCTCTTCCACTTCAATAAAATGCCT  999

seq1  A--GGCTATT-GTTCTACTGGCGCCGAGAAACCAGGTCTTGGAGTCAG-A  1036
      |  | ||||| || ||||||||||||||||  |||||||||||||||| |
seq2  AAGGCCTATTGGTCCTACTGGCGCCGAGAA--CAGGTCTTGGAGTCAGAA  1047

seq1  CACTGGTGAAGAGCGTCATCTGCAAGCACGTGGCCTCC--TCCTCACCT-  1083
      |||||||||| ||||| ||||||||||||||| |||||   ||||  || 
seq2  CACTGGTGAAAAGCGTTATCTGCAAGCACGTGTCCTCCCTCCCTCTACTT  1097

seq1  -AGAGCTTGGGGAGTC  1098
       ||| |||||||||||
seq2  AAGACCTTGGGGAGTC  1113


seq1: chr7_142614368_142614977
seq2: B6Ng01-341C18.g_68_677 (reverse)

seq1  ATGGGCTGGAGAGGTGGCTCAGCATTTGAGTGCTTCCTGCTCTTCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGGAGAGGTGGCTCAGCATTTGAGTGCTTCCTGCTCTTCCAGAG  50

seq1  GACCTAAGTTTAGTTCCTAGCACCCATATCAGGTAACTACAATCTACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGTTTAGTTCCTAGCACCCATATCAGGTAACTACAATCTACAAC  100

seq1  TTCAGCTCCTGAGCATCCAATGCTTTCTTCTGGCCCCAACAGGCAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCCTGAGCATCCAATGCTTTCTTCTGGCCCCAACAGGCAGCTGC  150

seq1  ATGCACATGAGGTATACACACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGAGGTATACACACACACACACACACACACACACACACACACA  200

seq1  AAAGATAAAGCTTTAGTTTAAAAAATGAAAAAAATTCAAAAAAGAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGCTTTAGTTTAAAAAATGAAAAAAATTCAAAAAAGAAATTA  250

seq1  TATTTTTCTGAGTCAAGATTGGTTTCACATGGCTTATCCATTCCTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTGAGTCAAGATTGGTTTCACATGGCTTATCCATTCCTGAATT  300

seq1  TTAGTCTCTGGGTCACATGTGTGCCTCTGAGATTTTATAAATGGTGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTGGGTCACATGTGTGCCTCTGAGATTTTATAAATGGTGTGGC  350

seq1  TTTTCTTTGAGGTTCAATTTTCAAATAGCTGACATTTATCTAATCTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAGGTTCAATTTTCAAATAGCTGACATTTATCTAATCTATGT  400

seq1  TTGCATCTTAAATACACACCATTCTTCCAACAATCCTGAAAATAGTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTTAAATACACACCATTCTTCCAACAATCCTGAAAATAGTGAGA  450

seq1  TATTATTATTTTCTTTTGAAGATGGAGAAACTGAGTCAGAGGCATGCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTTTCTTTTGAAGATGGAGAAACTGAGTCAGAGGCATGCCGT  500

seq1  GAAACCACACAACTAGAAGGCAGGAGAACTGGAACTCAATTTCACCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACACAACTAGAAGGCAGGAGAACTGGAACTCAATTTCACCCCCC  550

seq1  TGGTGCAGGACTGTGCCCTTTACTACCTGCAGCCTATACCTCTTCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGGACTGTGCCCTTTACTACCTGCAGCCTATACCTCTTCCTCCA  600

seq1  GGCAGAATTC  610
      ||||||||||
seq2  GGCAGAATTC  610


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