BAC Information

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BAC

Clone NameB6Ng01-341N18
Chromosome7 (Build37)7 (Build37)
Map Location 49,877,965 - 49,879,14750,242,903 - 50,243,400
singlet/doubletsingletsinglet
Overlap geneC330019L16Rik
Upstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneEG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341N18.bB6Ng01-341N18.g
ACCGA125122GA125123
length1,184494
definitionB6Ng01-341N18.b B6Ng01-341N18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,877,965 - 49,879,147)(50,242,903 - 50,243,400)
sequence
gaattctgtttaggaaatttccctctgtggcaataaatattaggctcttt
ctcactttctcttctatttaattcactgtatctggttttatattgaggtc
attgatccacttggacttaagctttgtgcaatgtgataagtatggatcta
tattcagttttccacatacagactaccagttagaccagcaccatctagtg
gtcctcaggacttaagtcctgttttccctccctcaaaacctgatcatgtt
ccctccttccccttcctgtccccactccctctgcctcttcccccactgtg
attgctttcttttccctcccaagtgggattgaggcaaccacacatgcacc
cttcagctacttctcccacttgcaaaagtgcttcatgttttaatgaggaa
catgattttagggcacaaagatccttgcatctacaaatcaccagggaaac
caggaatcttaaatatacagaggcctgcactcaattgaagaaaataaagg
gctggagagatggctcagtggttaagagcaccaactgctcttcctaaggt
cctgagttcaaattccagcaaacacatggtggctcacaaccatccataat
gagatctgatgccttcttctggtgcatctgaagacagctacagtgtactt
acatataataataaaaaatcttaaaaaggaacaagaaaaagaaatgaaaa
tacctacatacaacctaaaagtctggaagtggattttctttcttttcaga
gcaagcagggctagagcaagcagaggttctgagttcaattcccagcaacc
acatggtagctcacaaccatctgtacagctacagtgtactcattcatata
cataaaataaataaataaataattaaataaataaataaataaataaataa
atctttaaaaaaaagagaaagaaaaccttggggagcaaaacaccacaaac
tttagagggctggcaagatggccgggcaggtaagaacattgcctgttctc
ttccgaaggtcttggagtacaacaatcccagcaaccacatggtggctcac
aaccacttgtaatgagatctgatgcactcttgttgggtgcatctgaagaa
cagctactgtgtactttaggtatatataatactaaatcttttcaaatttt
aggaatgcattcttctaagcacgagtttcttcat
tgatcttctgctgtttggaacctcagagactgtggcatgggatgagtgat
gtgatgaggaaagacttgcttactgtacagacattcaactgaccccttta
tagaagctccacttttgcttcctgggtatttctgtgaccctgtggccact
tgcttctttgtcttccactgagtgaactgaatgtaagcagttacaggcct
ctaagcttatattcactctgctcctagtttgttctttcacttccaacata
tgtggatgcctcctagtcagatcctctctcacttttttaaaataaaaaaa
atatgttgtgataacattacttctcccctttcatttccttcctacaaacc
accccatgtcctttccggctagtcctttcctcttccctcactttctctct
aaatggttgccccattttttgacatatatatatatatatatatatatata
tatatatatatatatatatatatgtatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49877965_49879147
seq2: B6Ng01-341N18.b_46_1229

seq1  GAATTCTGTGTAGGAAATTTCCCTCTGTGGCAATACATATTAGGGTCTTT  50
      ||||||||| ||||||||||||||||||||||||| |||||||| |||||
seq2  GAATTCTGTTTAGGAAATTTCCCTCTGTGGCAATAAATATTAGGCTCTTT  50

seq1  CTCACATTCTCTTCTATTTAATTCATTCTATCTGGTTTTATATTGAGGTC  100
      ||||| ||||||||||||||||||| | ||||||||||||||||||||||
seq2  CTCACTTTCTCTTCTATTTAATTCACTGTATCTGGTTTTATATTGAGGTC  100

seq1  ATTGATCCACTTGGACTTAAGCTTTGTGCAATGTGATAAGTATGGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCACTTGGACTTAAGCTTTGTGCAATGTGATAAGTATGGATCTA  150

seq1  TATTCATTTTTCCACATACAGACTACCAGTTAGACCAGCACCATCTAGTG  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTTTTCCACATACAGACTACCAGTTAGACCAGCACCATCTAGTG  200

seq1  GTCCTCAGGACTTAAATCCTGTTTCCCCTCTCTCAAAACCTGATCATGTT  250
      ||||||||||||||| |||||||| ||||| |||||||||||||||||||
seq2  GTCCTCAGGACTTAAGTCCTGTTTTCCCTCCCTCAAAACCTGATCATGTT  250

seq1  CCCTCCTTCCCCTTCCTGTCCCCACTCCCTTTGCCCCTTCCCCCACTGTG  300
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  CCCTCCTTCCCCTTCCTGTCCCCACTCCCTCTGCCTCTTCCCCCACTGTG  300

seq1  ATTGCTTTCTTTTCCCTCCCAAGTGGGATTGAGGCAACCACACATGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTGCTTTCTTTTCCCTCCCAAGTGGGATTGAGGCAACCACACATGCACC  350

seq1  CTTCAGCTACTTCTCCCACTTGCAAAAGTGCTTCACGCTTTAATGAGGAA  400
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  CTTCAGCTACTTCTCCCACTTGCAAAAGTGCTTCATGTTTTAATGAGGAA  400

seq1  CATGATGTTGGGACACAAAGGTCCTTGCATCCATAGATCACCAGGGAAAC  450
      |||||| || || ||||||| |||||||||| | | ||||||||||||||
seq2  CATGATTTTAGGGCACAAAGATCCTTGCATCTACAAATCACCAGGGAAAC  450

seq1  CAGGAATCATAAATATATAGAGGCCTGCACTCAATTGAAGAAAATAAAGG  500
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGAATCTTAAATATACAGAGGCCTGCACTCAATTGAAGAAAATAAAGG  500

seq1  ACTGGAGAGATGGCTCAGTGGTTAAGAGTACCAACTGCTCTTCAGAAGGT  550
       ||||||||||||||||||||||||||| ||||||||||||||  |||||
seq2  GCTGGAGAGATGGCTCAGTGGTTAAGAGCACCAACTGCTCTTCCTAAGGT  550

seq1  CCTGAGTTCAAATCCCAGCAAACACATGGTGGCTCACAACCATCCATAAT  600
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAAATTCCAGCAAACACATGGTGGCTCACAACCATCCATAAT  600

seq1  GAGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGCAATAGTGTACTT  650
      ||||||||||||| |||||||||||||||||||||||| | |||||||||
seq2  GAGATCTGATGCCTTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTT  650

seq1  ACATATAATAATAAATAAATCTTAAAAAAAGAACAAGAAAAAGAAATGAA  700
      ||||||||||||||| ||||||| ||||| ||||||||||||||||||||
seq2  ACATATAATAATAAA-AAATCTT-AAAAAGGAACAAGAAAAAGAAATGAA  698

seq1  AATACCTACATACAACCTAGAAGTCTAGAAGTGGATTTTCTTTCTTTTCA  750
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AATACCTACATACAACCTAAAAGTCTGGAAGTGGATTTTCTTTCTTTTCA  748

seq1  GAGCAAGCAGGGCTAGAGCAAGCAGAGGTCCTGAGTTCAATTCCCAGCAA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGCAAGCAGGGCTAGAGCAAGCAGAGGTTCTGAGTTCAATTCCCAGCAA  798

seq1  CCACATGGTAGCTCACAACCATCTGTATAGCTACACTGTACTCATTCATA  850
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CCACATGGTAGCTCACAACCATCTGTACAGCTACAGTGTACTCATTCATA  848

seq1  TACAT--------TAAATAAATAAATATATAAATAAATAAATAAATAAAT  892
      |||||        ||||||||||| || ||||||||||||||||||||||
seq2  TACATAAAATAAATAAATAAATAATTAAATAAATAAATAAATAAATAAAT  898

seq1  AAATCTTTAAAAAAAAAGAAAAGAAAGAAAA-CTTGGGGAGTAAAACATC  941
      ||||||||||||||    || |||||||||| ||||||||| |||||| |
seq2  AAATCTTTAAAAAA----AAGAGAAAGAAAACCTTGGGGAGCAAAACACC  944

seq1  TCAAAAGTTTAGAGGGCTGGCAAGATGGCTGGGCAGGTAAGAGCACTGAC  991
       | ||| |||||||||||||||||||||| |||||||||||| || || |
seq2  AC-AAACTTTAGAGGGCTGGCAAGATGGCCGGGCAGGTAAGAACATTGCC  993

seq1  TGT--TCTTCCGAAGGTCCT-GAGTACA--AATCCCAGCAACCACACGGT  1036
      |||  ||||||||||||| | |||||||  |||||||||||||||| |||
seq2  TGTTCTCTTCCGAAGGTCTTGGAGTACAACAATCCCAGCAACCACATGGT  1043

seq1  GGCTCACAACAACCTGTAATGAGATCTGATGCACTCTTGT--GGTGCATC  1084
      |||||||||| || ||||||||||||||||||||||||||  ||||||||
seq2  GGCTCACAACCACTTGTAATGAGATCTGATGCACTCTTGTTGGGTGCATC  1093

seq1  TGAAG-ACAGCTACTGTGTAC-TTAGGTATA-ATAATAATTAAATCTTTT  1131
      ||||| ||||||||||||||| ||||||||| ||||| | ||||||||||
seq2  TGAAGAACAGCTACTGTGTACTTTAGGTATATATAAT-ACTAAATCTTTT  1142

seq1  TAAAAATTTTTAGAGAATTAAAATTTCTTCTAGAGCACCGAGTTTTCTTC  1181
       |||   |||||| ||||  |   |||||||| |||| |||| |||||||
seq2  CAAA---TTTTAG-GAATGCA---TTCTTCTA-AGCA-CGAG-TTTCTTC  1182

seq1  AT  1183
      ||
seq2  AT  1184

seq1: chr7_50242903_50243400
seq2: B6Ng01-341N18.g_69_568

seq1  GAATTCTGATCTTCTGCTGTTTGGAACCTCAGAGACTGTGGCATGGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTTCTGCTGTTTGGAACCTCAGAGACTGTGGCATGGGATG  50

seq1  AGTGATGTGATGAGGAAAGACTTGCTTACTGTACAGACATTCAACTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGATGAGGAAAGACTTGCTTACTGTACAGACATTCAACTGACC  100

seq1  CCTTTATAGAAGCTCCACTTTTGCTTCCTGGGTATTTCTGTGACCCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAGAAGCTCCACTTTTGCTTCCTGGGTATTTCTGTGACCCTGTG  150

seq1  GCCACTTGCTTCTTTGTCTTCCACTGAGTGAACTGAATGTAAGCAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTGCTTCTTTGTCTTCCACTGAGTGAACTGAATGTAAGCAGTTAC  200

seq1  AGGCCTCTAAGCTTATATTCACTCTGCTCCTAGTTTGTTCTTTCACTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTAAGCTTATATTCACTCTGCTCCTAGTTTGTTCTTTCACTTCC  250

seq1  AACATATGTGGATGCCTCCTAGTCAGATCCTCTCTCACTTTTTTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTGGATGCCTCCTAGTCAGATCCTCTCTCACTTTTTTAAAATA  300

seq1  AAAAAAATATGTTGTGATAACATTACTTCTCCCCTTTCATTTCCTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATGTTGTGATAACATTACTTCTCCCCTTTCATTTCCTTCCTA  350

seq1  CAAACCACCCCATGTCCTTTCCGGCTAGTCCTTTCCTCTTCCCTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACCCCATGTCCTTTCCGGCTAGTCCTTTCCTCTTCCCTCACTTT  400

seq1  CTCTCTAAATGGTTGCCCCATTTTTTGAC--ATATATATATATATATATA  448
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CTCTCTAAATGGTTGCCCCATTTTTTGACATATATATATATATATATATA  450

seq1  TATATATATATATATATATATATATATATGTATATATATACATATTTATA  498
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  TATATATATATATATATATATATATATATGTATATATATATATATATATA  500