BAC Information

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BAC

Clone NameB6Ng01-342I17
Chromosome7 (Build37)
Map Location 9,935,119 - 9,936,249
singlet/doubletsinglet
Overlap geneV2r4
Upstream geneLOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961
Downstream geneLOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342I17.bB6Ng01-342I17.g
ACCGA125596GA125597
length1,2561,132
definitionB6Ng01-342I17.b B6Ng01-342I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtctattttttattggggttatttggttttc
tggagtccagcttctagagttctttatatatattggatattagcccccta
tcagatttaggattggaaagatcttttcccaatttgtttgttgctgtttt
atcttactgacatactttgcctaacaaaagctttgcaattttatgaggtc
tcatatgtcaattctggatcttacagcacaagccatttctgttgttcagg
atttcccccctgtgccaatatcttcgagactcttccctactttctcctct
ataaggtcattgtctctgattttatatgtagttccttgatccacttagac
ttgatctttgtacaaagagataaaaatggattaattcacattcttctaca
tgacaacttacagttgtaccagtgccatttgttcaaaacgctgtcttatg
tccactggatgactgtagctcctttgttaaagattaagtaaccatagatg
tgtgagttcatttatgtgtcttcaattctattccacttatctacatgtct
attttgagaccagtaccatgcagtttttaatcacaattgctctgtagtac
agcttgaggtcactcatggtgattccacaagaggttcttttatagttgaa
aatagtatttgctgtcctcatttttttggttgtttgtttgtttgtctttg
ttttgttttgttttgtttttgttattccagatgaatttgcaattgccctt
tctaactctgaagaattgagttggaacttgatgtgaattgcattgaatct
gtaaattgctattgacaagatagccatttttagtatatcaatcctgccaa
ttcatgaacatggaagatctccatcttctgagatcatctttgatttcctt
cttcacagacttgaagttcgtatcatgcagatcttgagtccttaagtaga
gtcacacaaaggtattttatattatttgtgacttatttggaaggtgttgt
ttccctactttctttcctcagcctatttatctttttgtgttagaaaaggc
cactgaattgtttggagttaatttagaatctagctaccttcaatgaaatg
ttatccagcttaaggcgttctcccatattgaatttgggggtcattttaaa
tgtggaatcaatacactctgcacaggaatttgaacactccctcttcatgg
acctaatcgtgccccatgcctggctggcacctcaagtggcctaatcgtaa
tgacag
gaattcctcttgtagtttgatattaatagtttataggagcttcttcttat
gtttattcacatgcaaatgtggaatacataatctgtatcagtagttccag
atgttctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcttagtactaagctgggaacaactgtcattcaattgtctatcacta
actcatgcttaactcactactattcatttgaggtatgaagtaggatttca
tggtcttttcacctagctcattttcatatgtctatttttcataatgtgtt
atgaaaattttgttatattatgatggcttagttttgtttaatcttgtttt
attttactattctcccatagaatcctgtcattttctaatgagtgacataa
agtggatttgatgaaaaaggaagaaaatatgaatattaactatgatatat
ttgccaggagaactgacaattgttcacatcccagtagaagaactggaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aacaatcaaaattaaaaacaaattctccctgttctcagagaatgatcttt
ctgttatgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatattcatcaaatgtattgttcttgaatgaccttttttccctctca
ttaaacattattctgtttttttccattttttaataaaggaaagttctcct
tttgtatatgaatgtgtcttcctacctctgcaggcatcttaggaatgtct
taaaaaataaaccagttttgttgtcgtagatttcatttagagaatgttaa
caaaaaagttcaattatcactgaaaattatatgttgcttttgtctggttg
ctgttattggctgtacttgaggtggtgtcaatagcctttattttttctgg
tgtctattgctgtctataggttcctttgatctctggtcatcttatggaaa
ggagtggaatgggattctcaaatttactaaaaagtcatgttttctatgga
tatggattttctgtaattggtgtcataggtgatgtctttattaatgggta
acatttttgggaattaatgacaagggtcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9935119_9936249
seq2: B6Ng01-342I17.g_71_1202 (reverse)

seq1  TGATGACCCTTGTCATT-ATATCCAAAAATGTTTACCATATAATAAAAGG  49
      ||||||||||||||||| ||  |||||||||||  |||| |||||||  |
seq2  TGATGACCCTTGTCATTAATTCCCAAAAATGTTACCCAT-TAATAAA--G  47

seq1  ACATTCACTAATGAACACAATTACAGAAAAT-CATATTCATAG-AAACAT  97
      ||| ||||  ||||   |||||||||||||| ||||| ||||| ||||||
seq2  ACA-TCACCTATGACACCAATTACAGAAAATCCATATCCATAGAAAACAT  96

seq1  GACTTTTTAGTAAATTTGAAGAAT-CCATT-CACTCTTTTCCATAAGATG  145
      |||||||||||||||||| ||||| ||||| ||||| |||||||||||||
seq2  GACTTTTTAGTAAATTTG-AGAATCCCATTCCACTCCTTTCCATAAGATG  145

seq1  ACCAGAAGATCAAAGGAACCTATAGACAGCAATAGAACACAGAAAAAATA  195
      ||||| ||||||||||||||||||||||||||||||   |||||||||||
seq2  ACCAG-AGATCAAAGGAACCTATAGACAGCAATAGACACCAGAAAAAATA  194

seq1  AAGGCTATTGACA-CACCTCAAGTACAG-CAATAACAGCAACCAGACAAA  243
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AAGGCTATTGACACCACCTCAAGTACAGCCAATAACAGCAACCAGACAAA  244

seq1  AGCAACATATAATTTTCAGTGATAATTGAACTTTTTTGTTAACATTCTCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATATAATTTTCAGTGATAATTGAACTTTTTTGTTAACATTCTCT  294

seq1  AAATGAAATCTACGACAACAAAACTGGTTTATTTTTTAAGACATTCCTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATCTACGACAACAAAACTGGTTTATTTTTTAAGACATTCCTAA  344

seq1  GATGCCTGCAGAGGTAGGAAGACACATTCATATACAAAAGGAGAACTTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGCAGAGGTAGGAAGACACATTCATATACAAAAGGAGAACTTTC  394

seq1  CTTTATTAAAAAATGGAAAAAAACAGAATAATGTTTAATGAGAGGGAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAAAAAATGGAAAAAAACAGAATAATGTTTAATGAGAGGGAAAA  444

seq1  AAGGTCATTCAAGAACAATACATTTGATGAATATGTGTGGAATAATTCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTCAAGAACAATACATTTGATGAATATGTGTGGAATAATTCTT  494

seq1  GACAAAAACACCTACCAAAAGAACACAACACATAACAGAAAGATCATTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACACCTACCAAAAGAACACAACACATAACAGAAAGATCATTCT  544

seq1  CTGAGAACAGGGAGAATTTGTTTTTAATTTTGATTGTTTTATTTATTGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAGGGAGAATTTGTTTTTAATTTTGATTGTTTTATTTATTGAA  594

seq1  AATAACTTGTTATTCTCACATAATATATCCTAATTACAGTTTCCAGTTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTGTTATTCTCACATAATATATCCTAATTACAGTTTCCAGTTCT  644

seq1  TCTACTGGGATGTGAACAATTGTCAGTTCTCCTGGCAAATATATCATAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGATGTGAACAATTGTCAGTTCTCCTGGCAAATATATCATAGT  694

seq1  TAATATTCATATTTTCTTCCTTTTTCATCAAATCCACTTTATGTCACTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCATATTTTCTTCCTTTTTCATCAAATCCACTTTATGTCACTCA  744

seq1  TTAGAAAATGACAGGATTCTATGGGAGAATAGTAAAATAAAACAAGATTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATGACAGGATTCTATGGGAGAATAGTAAAATAAAACAAGATTA  794

seq1  AACAAAACTAAGCCATCATAATATAACAAAATTTTCATAACACATTATGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTAAGCCATCATAATATAACAAAATTTTCATAACACATTATGA  844

seq1  AAAATAGACATATGAAAATGAGCTAGGTGAAAAGACCATGAAATCCTACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGACATATGAAAATGAGCTAGGTGAAAAGACCATGAAATCCTACT  894

seq1  TCATACCTCAAATGAATAGTAGTGAGTTAAGCATGAGTTAGTGATAGACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTCAAATGAATAGTAGTGAGTTAAGCATGAGTTAGTGATAGACA  944

seq1  ATTGAATGACAGTTGTTCCCAGCTTAGTACTAAGAATACTTTATTTTTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGACAGTTGTTCCCAGCTTAGTACTAAGAATACTTTATTTTTGA  994

seq1  AAATATAATTCAAACTGTCAATTCGATAATCAGAACATCTGGAACTACTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATTCAAACTGTCAATTCGATAATCAGAACATCTGGAACTACTG  1044

seq1  ATACAGATTATGTATTCCACATTTGCATGTGAATAAACATAAGAAGAAGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATTATGTATTCCACATTTGCATGTGAATAAACATAAGAAGAAGC  1094

seq1  TCCTATAAACTATTAATATCAAACTACAAGAGGAATTC  1131
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAACTATTAATATCAAACTACAAGAGGAATTC  1132