BAC Information

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BAC

Clone NameB6Ng01-342J06
Chromosome7 (Build37)
Map Location 78,395,483 - 78,498,744
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342J06.bB6Ng01-342J06.g
ACCGA125620GA125621
length6141,123
definitionB6Ng01-342J06.b B6Ng01-342J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,395,483 - 78,396,096)(78,497,621 - 78,498,744)
sequence
gaattcctaactggatcctcactactagaccgttactagtaagataccta
aggcaccaagatcaggatgcaatggtaggatactaccagtacagttggga
agatggggagcctgataggtgaaatggcataggatacatgagtgaaagag
ggctggggtaagggcaaaagaagaaagaataggaaagaaaacaagaagga
gaaaatagaaaagatgagaaataaaaaagttcaaaattcctgggatgtgc
aaagccatatcttgagttctagtgaaatatctgagagtggtttccagaaa
tggggtcccccaacttctgatatagtcaatcccctttctttatagacacc
tgagtaataatgacaagatattcggatatcaggacagcagtaacaaccag
aggggcaacatcttgttatagctgttgacatgaagaattgagcagagcca
gagagccttatagaaaacattctagtaatgaggattatgagagtaatcat
gagatcattgtcacaattaagtttatagcaactgctgctgttgctgtaag
ccctaacaacatggcatgtgtcttcctcaaatatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgt

gaattccagtgtgaatccactaattcaataatccaataacataaattcaa
gtaatggatattaatactatgttcaaaacacgctcccaacgtttatatct
ctctttccctgacagacagagcatgcgttatgaggggctcttgatgcaat
aataaaacccaattctcatccagaaaaaaagaagaatcattatgggaggg
tggtaatttactttatacgaccttccattgattattctgtggctgctaca
caaatatcacaggagctattgatcgtaaaacctaccaaatagatctctaa
tagcttttactgggcaaaaataattatgcttgcactgtggtcaaacacgc
ataaaccaatgtggaggtattaatgtatggtattattacccatctgtcgg
caagatatggagaagagccttcccaggtacacactatgtctgtgtaccat
gaaagctcgatacccgtgccaacaattatagccagttatactgaagaaat
tgattactgtaactaaaacctagagcaggaaaccaggggctgaagctttc
cttaataaaaagtaaaataataacgagagagcctaattgagcccaggctt
cgaggacacagaaattgaatttccctgtggcatgttggcagctgagtcaa
gagcttcctagccagtcttgatcaagatcaatgaccagcacgcgtaaaag
gtcaaggtatctaatccaagaactgaccatctacctcacaaggaaaaatg
tactgcccaactcaaaaaggagcctctgctggccatggatggcggggaaa
accaagagacatcccagttccacttgagtcaacgtgtagaatgacatggg
tcacacttcagagagacccaaccacccccacctgcccccccccaaaaaaa
acccaattggcacaatagtgatggttccagcagtctgagctctcaaattc
tgggaaagatatttcagatgttcatctgtgactttcttttcacctacctg
aaagaattattctaataacgctataaatattcttcatcaatattcagcat
aagaaactcaaaactcctattcaagccacttcactgagcatggggagtga
attgttcacggtgcatcactcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78395483_78396096
seq2: B6Ng01-342J06.b_47_660

seq1  GAATTCCTAACTGGATCCTCACTACTAGACCGTTACTAGTAAGATACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACTGGATCCTCACTACTAGACCGTTACTAGTAAGATACCTA  50

seq1  AGGCACCAAGATCAGGATGCAATGGTAGGATACTACCAGTACAGTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAAGATCAGGATGCAATGGTAGGATACTACCAGTACAGTTGGGA  100

seq1  AGATGGGGAGCCTGATAGGTGAAATGGCATAGGATACATGAGTGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGAGCCTGATAGGTGAAATGGCATAGGATACATGAGTGAAAGAG  150

seq1  GGCTGGGGTAAGGGCAAAAGAAGAAAGAATAGGAAAGAAAACAAGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGTAAGGGCAAAAGAAGAAAGAATAGGAAAGAAAACAAGAAGGA  200

seq1  GAAAATAGAAAAGATGAGAAATAAAAAAGTTCAAAATTCCTGGGATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAAAAGATGAGAAATAAAAAAGTTCAAAATTCCTGGGATGTGC  250

seq1  AAAGCCATATCTTGAGTTCTAGTGAAATATCTGAGAGTGGTTTCCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATATCTTGAGTTCTAGTGAAATATCTGAGAGTGGTTTCCAGAAA  300

seq1  TGGGGTCCCCCAACTTCTGATATAGTCAATCCCCTTTCTTTATAGACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCCCAACTTCTGATATAGTCAATCCCCTTTCTTTATAGACACC  350

seq1  TGAGTAATAATGACAAGATATTCGGATATCAGGACAGCAGTAACAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATAATGACAAGATATTCGGATATCAGGACAGCAGTAACAACCAG  400

seq1  AGGGGCAACATCTTGTTATAGCTGTTGACATGAAGAATTGAGCAGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAACATCTTGTTATAGCTGTTGACATGAAGAATTGAGCAGAGCCA  450

seq1  GAGAGCCTTATAGAAAACATTCTAGTAATGAGGATTATGAGAGTAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTTATAGAAAACATTCTAGTAATGAGGATTATGAGAGTAATCAT  500

seq1  GAGATCATTGTCACAATTAAGTTTATAGCAACTGCTGCTGTTGCTGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATTGTCACAATTAAGTTTATAGCAACTGCTGCTGTTGCTGTAAG  550

seq1  CCCTAACAACATGGCATGTGTCTTCCTCAAATATGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACAACATGGCATGTGTCTTCCTCAAATATGTGTGTGTGTGTGTGT  600

seq1  GTGTGTGTGTGTGT  614
      ||||||||||||||
seq2  GTGTGTGTGTGTGT  614


seq1: chr7_78497621_78498744
seq2: B6Ng01-342J06.g_67_1189 (reverse)

seq1  GCGAGTGATGACACGTGAACAAATCACT-CCCATGCCTCAGTGAAGTGGC  49
      ||||||||||   ||||||||| ||||| |||||| ||||||||||||||
seq2  GCGAGTGATGCACCGTGAACAATTCACTCCCCATG-CTCAGTGAAGTGGC  49

seq1  TTG-ATAGGAGTTTTGAGTTTTCTTAATGCTG-ATATTGATGAAG-ATAT  96
      ||| |||||||||||||| |||||| |||||| |||||||||||| ||||
seq2  TTGAATAGGAGTTTTGAG-TTTCTT-ATGCTGAATATTGATGAAGAATAT  97

seq1  TTATAGCGTTATTTAGAATAATTCTTTCAGGTAGGTGAAAAGAAAGTCAC  146
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCGTTA-TTAGAATAATTCTTTCAGGTAGGTGAAAAGAAAGTCAC  146

seq1  AGATGAACATCTGAAATATCTTTCCCAGAATTTGAGAGCTCAGACTGCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACATCTGAAATATCTTTCCCAGAATTTGAGAGCTCAGACTGCTG  196

seq1  GAACCATCACTATTGTGCCAATTGGGTTTTTTTTTGGGGGGGGGCAGGTG  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAACCATCACTATTGTGCCAATTGGG-TTTTTTTTGGGGGGGGGCAGGTG  245

seq1  GGGGTGGTTGGGTCTCTCTGAAGTGTGACCCATGTCATTCTACACGTTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTTGGGTCTCTCTGAAGTGTGACCCATGTCATTCTACACGTTGA  295

seq1  CTCAAGTGGAACTGGGATGTCTCTTGGTTTTCCCCGCCATCCATGGCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGGAACTGGGATGTCTCTTGGTTTTCCCCGCCATCCATGGCCAG  345

seq1  CAGAGGCTCCTTTTTGAGTTGGGCAGTACATTTTTCCTTGTGAGGTAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCCTTTTTGAGTTGGGCAGTACATTTTTCCTTGTGAGGTAGAT  395

seq1  GGTCAGTTCTTGGATTAGATACCTTGACCTTTTACGCGTGCTGGTCATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTCTTGGATTAGATACCTTGACCTTTTACGCGTGCTGGTCATTG  445

seq1  ATCTTGATCAAGACTGGCTAGGAAGCTCTTGACTCAGCTGCCAACATGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATCAAGACTGGCTAGGAAGCTCTTGACTCAGCTGCCAACATGCC  495

seq1  ACAGGGAAATTCAATTTCTGTGTCCTCGAAGCCTGGGCTCAATTAGGCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATTCAATTTCTGTGTCCTCGAAGCCTGGGCTCAATTAGGCTC  545

seq1  TCTCGTTATTATTTTACTTTTTATTAAGGAAAGCTTCAGCCCCTGGTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTATTATTTTACTTTTTATTAAGGAAAGCTTCAGCCCCTGGTTTC  595

seq1  CTGCTCTAGGTTTTAGTTACAGTAATCAATTTCTTCAGTATAACTGGCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGGTTTTAGTTACAGTAATCAATTTCTTCAGTATAACTGGCTA  645

seq1  TAATTGTTGGCACGGGTATCGAGCTTTCATGGTACACAGACATAGTGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTGGCACGGGTATCGAGCTTTCATGGTACACAGACATAGTGTGT  695

seq1  ACCTGGGAAGGCTCTTCTCCATATCTTGCCGACAGATGGGTAATAATACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAAGGCTCTTCTCCATATCTTGCCGACAGATGGGTAATAATACC  745

seq1  ATACATTAATACCTCCACATTGGTTTATGCGTGTTTGACCACAGTGCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAATACCTCCACATTGGTTTATGCGTGTTTGACCACAGTGCAAG  795

seq1  CATAATTATTTTTGCCCAGTAAAAGCTATTAGAGATCTATTTGGTAGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATTTTTGCCCAGTAAAAGCTATTAGAGATCTATTTGGTAGGTT  845

seq1  TTACGATCAATAGCTCCTGTGATATTTGTGTAGCAGCCACAGAATAATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATCAATAGCTCCTGTGATATTTGTGTAGCAGCCACAGAATAATCA  895

seq1  ATGGAAGGTCGTATAAAGTAAATTACCACCCTCCCATAATGATTCTTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGTCGTATAAAGTAAATTACCACCCTCCCATAATGATTCTTCTT  945

seq1  TTTTTCTGGATGAGAATTGGGTTTTATTATTGCATCAAGAGCCCCTCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGATGAGAATTGGGTTTTATTATTGCATCAAGAGCCCCTCATA  995

seq1  ACGCATGCTCTGTCTGTCAGGGAAAGAGAGATATAAACGTTGGGAGCGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATGCTCTGTCTGTCAGGGAAAGAGAGATATAAACGTTGGGAGCGTG  1045

seq1  TTTTGAACATAGTATTAATATCCATTACTTGAATTTATGTTATTGGATTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACATAGTATTAATATCCATTACTTGAATTTATGTTATTGGATTA  1095

seq1  TTGAATTAGTGGATTCACACTGGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  TTGAATTAGTGGATTCACACTGGAATTC  1123


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