BAC Information

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BAC

Clone NameB6Ng01-343H04
Chromosome7 (Build37)
Map Location 151,696,749 - 151,697,945
singlet/doubletsinglet
Overlap genePpfia1
Upstream geneNap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn
Downstream geneFadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343H04.bB6Ng01-343H04.g
ACCGA126221GA126222
length1,2301,187
definitionB6Ng01-343H04.b B6Ng01-343H04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctccttatcgtctttatggaaacaggaacgaggtcatgtgtgg
ggcttgggtggtgtgtgagccccagacagagctggaacttgccaaatgtg
gaatgtagcatagtccaggaacccagagcaggagggaaagaagacagggc
tgggggtcagccgacccagaccctgttctggtctcttgatttcactggcc
tcgagcagtctggttagagacctggtgtcctggtaagactggtgcctgtc
taacagcatggcagatgtggatgtcagagcaagcccaggcaagaaaccac
tttcaggattgctaaaatagctagcgcagggggaccttggcagagaggcc
atgcttttcccacccccaactggagccttccccacctgcagagccagaga
tttggggtcagttggcccagcctccctactttgtgcctttgcatgagctg
ttctactggactgacagcgatgcttcacctgccttttctccagcaccctt
gatttcatcttcccttcactgtccttccaatgccccttatcccatagagt
ggccactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgtaaccttta
cctatgctttcctttgtctctgtaaataaattttgattctttagaatata
aattgtctcccttatcttgccagagtcatgggggaggaggcactaaaatg
actaattaaaagattagtagtctaaagagaaaggtaaaaatctgtcaaat
aagatgcctaaataatagttgaatcaatatatttttgtctctatctttca
tgtgtatatctttgtatgcatgcaaatgcattatatcttttatatatgtg
cagacatgcaagtgtgtgtcgtgtgtgtgtgtggttctggtctacataag
taccaagttgacttaatataaaagtgaaatggaacacaaagaacatcaaa
tacaagtagctccaaacatttcctacagcgagtctaacatcctgtctttt
ataaatatcaaccttgtttcttcccttgagagcaacgatttccaattttg
cttcagaagaattttttgtacctgactggaaagaaatataaaagaaacca
cactctagtccgctccccctcttcctttcgggtcgtgaaaaacttattac
cttacatctcaactttatccagcacatttacaaaggccctaccttttttg
cacactcgcgcaaggttcctttttagatac
gaattctcattgagtcagagagtgaggtaccttatcatgctgggtctctt
ctagttgcttctttgcattttcaacttcccttagtagagaattctgaaaa
agaaaatgtccttcagggctgtttcttcaaaatgttccatgtaatacact
ggctactcttgcttaaactaaagagcagccctgaaggaagggcttggtca
tggaaagcaccaaaagcagggagggccacagcccagtcaaccaataccaa
gcacgaatgaggtcagatgctgctgtgtctgttcctgtgtgtgcaacctg
tgtcttcctacagcaggcctgccacactcagtgtcatgctcaatggtgca
agggtttttgctgatgctgcttagctttttaggtttgtttttctgtttgt
ttgtttgtttgtttaagacagtcttgttctgtagaccagagcagcctgag
acctgcagcaatcctcctgacttagcatctgagatgacaagtatgagcca
tcatacttgaccttcagatttgttttcataacttcttgcaagtggtctac
agtgacttttagatttgagtattcactggccacttaggaaacataaagtt
aagttttacatgtaaagtttaagacaacacattcctatccaaagccaggc
ccctcattcccgcacaccaggactcttgaaactcaggcaaaaggatcagt
tcaagactattattagaactatctagaaagaaaagaattttaaaaactta
tccatagccaaaggtaacgcttgggtgaggaggtcagagtaactattctg
catggtctctaagggcaccctccccacctctcacaatactcatgtgtttc
caccagcacaaccccatgcaagtactgccctcaggatatctctaagctac
atcttgagagagcagcacagctggggcaggccgtctgaagtctgagccta
agtgctgcccaccaggacctctgtgagaccctaacttcaatgagtatctg
gggccttccatgagcaatcctaaaagccaggcttagccttctcaaatcag
aagaggaaagcactgctgaaacttgggagtacgaccctggagcgattaga
tccctttctgttctgcatgcctcttgagcacagcaatgttaacgcattgc
cattgaatgactctcaattcaagatacacaggtaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_151696749_151697945
seq2: B6Ng01-343H04.g_68_1254

seq1  GAATTCTCATTGAGTCAGAGAGTGAGGTACCTTATCATGCTGGGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGAGTCAGAGAGTGAGGTACCTTATCATGCTGGGTCTCTT  50

seq1  CTAGTTGCTTCTTTGCATTTTCAACTTCCCTTAGTAGAGAATTCTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCTTCTTTGCATTTTCAACTTCCCTTAGTAGAGAATTCTGAAAA  100

seq1  AGAAAATGTCCTTCAGGGCTGTTTCTTCAAAATGTTCCATGTAATACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTCCTTCAGGGCTGTTTCTTCAAAATGTTCCATGTAATACACT  150

seq1  GGCTACTCTTGCTTAAACTAGAGAGCAGCCCTGAAGGAAGGGCTTGGTCA  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCTACTCTTGCTTAAACTAAAGAGCAGCCCTGAAGGAAGGGCTTGGTCA  200

seq1  TGGAAAGCACCAAAAGCAGGGAGGGCCACAGCCCAGTCAACCAATACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCACCAAAAGCAGGGAGGGCCACAGCCCAGTCAACCAATACCAA  250

seq1  GCACGAATGAGGTCAGATGCTGCTGTGTCTGTTCCTGTGTGTGCAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGAATGAGGTCAGATGCTGCTGTGTCTGTTCCTGTGTGTGCAACCTG  300

seq1  TGTCTTCCTACAGCAGGCCTGCCACACTCAGTGTCATGCTCAATGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTACAGCAGGCCTGCCACACTCAGTGTCATGCTCAATGGTGCA  350

seq1  AGGGTTTTTGCTGATGCTGCTTAGCTTTTTAGGTTTGTTTTTCTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTGCTGATGCTGCTTAGCTTTTTAGGTTTGTTTTTCTGTTTGT  400

seq1  TTGTTTGTTTGTTTAAGACAGTCTTGTTCTGTAGACCAGAGCAGCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTAAGACAGTCTTGTTCTGTAGACCAGAGCAGCCTGAG  450

seq1  ACCTGCAGCAATCCTCCTGACTTAGCATCTGAGATGACAAGTATGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGCAATCCTCCTGACTTAGCATCTGAGATGACAAGTATGAGCCA  500

seq1  TCATACTTGACCTTCAGATTTGTTTTCATAACTTCTTGCAAGTGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTGACCTTCAGATTTGTTTTCATAACTTCTTGCAAGTGGTCTAC  550

seq1  AGTGACTTTTAGATTTGAGTATTCACTGGCCACTTAGGAAACATAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTTTAGATTTGAGTATTCACTGGCCACTTAGGAAACATAAAGTT  600

seq1  AAGTTTTACATGTAAAGTTTAAGACAACACATTCCTATCCAAAGCCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACATGTAAAGTTTAAGACAACACATTCCTATCCAAAGCCAGGC  650

seq1  CCCTCATTCCCGCACACCAGGACTCTTGAAACTCAGGCAAAAGGATCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTCCCGCACACCAGGACTCTTGAAACTCAGGCAAAAGGATCAGT  700

seq1  TCAAGACTATTATTAGAACTATCTAGAAGGAAAAGAATTTTAAAAACTTA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAAGACTATTATTAGAACTATCTAGAAAGAAAAGAATTTTAAAAACTTA  750

seq1  TCCATAGCCAAAGGTAACGCTTGGGTGAGGAGGTCAGAGTAACTATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCCAAAGGTAACGCTTGGGTGAGGAGGTCAGAGTAACTATTCTG  800

seq1  CATGGTCTCTAAGGGCACCCTCCCAACCTCTCACAAATACTCATGTGTTT  850
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CATGGTCTCTAAGGGCACCCTCCCCACCTCTCAC-AATACTCATGTGTTT  849

seq1  CCACCAGCACAACCCCATGCAAGTACTGCCCTCAGGATATCTCTAAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCACAACCCCATGCAAGTACTGCCCTCAGGATATCTCTAAGCTA  899

seq1  CATCTTGAGAGAGCAGCACAGCTGGGGCAGGCCGTCTGAAGTCTGAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAGAGAGCAGCACAGCTGGGGCAGGCCGTCTGAAGTCTGAGCCT  949

seq1  AAGTGCTGCCCACCAGGACCTCTGTGGAGACCCTAAACTTCAATGAGTTA  1000
      ||||||||||||||||||||||||| |||||||| |||||||||||| ||
seq2  AAGTGCTGCCCACCAGGACCTCTGT-GAGACCCT-AACTTCAATGAG-TA  996

seq1  TCTGGGGCCTTCCATGAGGCAAATCCTAAAAGCCAGGCTTAGCCTTCTTC  1050
      ||||||||||||||||||   |||||||||||||||||||||||||||  
seq2  TCTGGGGCCTTCCATGAG--CAATCCTAAAAGCCAGGCTTAGCCTTCT--  1042

seq1  CAAATCAAGAGAAGGAAAGGCAACTGCTGAAACCTGGGAGTACGACCCTG  1100
      |||||| |||  |||||||   ||||||||||| ||||||||||||||||
seq2  CAAATC-AGAAGAGGAAAG--CACTGCTGAAACTTGGGAGTACGACCCTG  1089

seq1  GAGCCGATTAGATCCC-TTCTGTTCTGCCATG-CTCTTGAAGCACAGC-A  1147
      ||| |||||||||||| |||||||||| |||| |||||| |||||||| |
seq2  GAG-CGATTAGATCCCTTTCTGTTCTG-CATGCCTCTTG-AGCACAGCAA  1136

seq1  TGTATAAGGAAATGGAAATTGATTGACTCTCAATCAAAG---TACAGGTA  1194
      ||| ||| |  || |  ||||| |||||||||||  |||    |||||||
seq2  TGT-TAACG-CATTGCCATTGAATGACTCTCAATTCAAGATACACAGGTA  1184

seq1  AGG  1197
      |||
seq2  AGG  1187