BAC Information

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BAC

Clone NameB6Ng01-343J05
Chromosome7 (Build37)
Map Location 8,572,601 - 8,573,803
singlet/doubletsinglet
Overlap geneLOC100042724
Upstream geneEG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967
Downstream geneLOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343J05.bB6Ng01-343J05.g
ACCGA126317GA126318
length1,2481,179
definitionB6Ng01-343J05.b B6Ng01-343J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttttgagatttgtttacctcactgaagacgatatcctccagag
tcatccatttgtctgagaattttatgaattcattgtttttaatagctgag
tagtagtccattgtgtaaatgtaacacattttctgtatccattcctctgt
tgaggggcatccaggttatttccattttctggctattatatataaggctg
ctatgaacatagtggagcatgtgtccttatttcgagttggaacgtcttct
gggtaaatgtccaggagaggtattaatggatcctcagatagtactatgtc
caccaattttctgaggaagtaccagaatgatttccagaatggttgtagca
gctcacaatcccaccagcaatggaggagtgttcctcttttaccacatact
ccccagcatctgcagtcacctgaatttttgatcttagccattctgactgg
tgtgaggtggaatctcagggttattttgatttgcatttccctggtgatta
aggatgttgaacatttcttttggtgtttctcagccattcggtattcctca
attgagaattctgtgtttaactctgtctgtaccccatttttaatggggtt
atttggttttctggactctattttcttaaattctttatatatattggata
ttagtcccctatctgatttaggattggtaaagatcttttcccaatctgtt
tgttgacatttgccatttgttgtcttactgacattatactttgcctaaca
gaagctttgcaattttatgtggtctcatatgtcaattcttgatcttacag
tacaagccatttctgtagttcaggaagttttcccttgtgccaatatcttc
gagactcttctctactatctcctctataagataattgtctctgattttat
gtggagttccttgatccacttagaatagagctttgtacaaaaagataaga
atggataaattcacattcttcttacatgacaagtgccaggtataccagtt
ctttgttcaaatgctgtattatttccactggaggattgttagctcctttg
gtcaagattaagtaaccatagatgtgtgggttcaatttctttgtcttcat
tctattccacggatcttacctgtcctgtcgctgttatacagtatccatgc
cagttttataatacaattgctctgtagatacaggcctgaaggctcagtca
atggtgaatctaccacgaaaggaatggtgtatatagattgtatggaca
gaattcccattgacatataacatcactttgtccaaagaattccttttgca
gtttgacattaatagtttataggtgcttcttcttatgtttgttcacatgc
aaatgtggaataaataatttgtatcagtacttccagatattctgattatc
gaattgacagtttgaattatattttcaaaaacaaagtattctttttacta
aacttggaaaaactgtcactcaattgtctatcactaactcatgcttcatt
cactactattcaaatgaggtatgaagtaggatttcgtggtcttttcacct
agctcaatttcatatgtctagttaccaaaatgtgttatgaaaattttgtt
ctattatgatggcttagatttgtttaaacttgttttattttattctccca
tagaatcctgtcatcttctaatgagtgacataaagtggatctgatgaaaa
aggaaggaaataggcatattaactatgatatattttccagtagaaatgac
aattgttcacatcccaatagaaggaatggaaactgtaattaggatgtatt
atgtgagaataacaagttattttcaataaataaaacaatcaaaattaaaa
aaaaaaaactacgtgttctcagagaatgatcttgtttggtgttgtgttct
tttggtaggtgtttttgtcaagaattattccacacatatccatcaaatgt
attgtttttgaatgacctttttccctcttattaaacattatgctgttttt
atccattttttaataaagaaaagttctcctcttgtatatgaatgtgcttt
cctattctctgcaaacaacttaggaatgtcttaaaaaataaaccagtttt
ttttatttgatttcatttaggagaatgtgaacacaaaagttcaattataa
gtgaaaattacttgttgcttttgtctggttgctgttattgctgtacttga
gtgtgtatagcctttattttttctgttgtctagtgctgtctataggtctt
tgaccttctggtcatcttatgtaaagagtggagtgattctttcaattact
aaaagtgatgtttctattgaatatgattttctgtattgggtcatatgatg
gtgtcgaatgccttattatacgtaaactttggataatgacagttagcata
tgacgtgtgggtttccataactgttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8572601_8573803
seq2: B6Ng01-343J05.g_68_1246 (reverse)

seq1  TGTT-ACAGTTATGAAACACCAACA-GTCATAATTGCTAACCCTTGTCAT  48
      |||| ||||||||| || ||| ||| ||||||  |||||||   ||||||
seq2  TGTTAACAGTTATGGAA-ACCCACACGTCATA--TGCTAAC---TGTCAT  44

seq1  TATATCCAAAAGTTTTTACCGTATAATAAAAGGGCATTCGACACATTCAC  98
      |||   | |||||||    ||||||||||   ||||||||||||  ||| 
seq2  TAT---CCAAAGTTT---ACGTATAATAA---GGCATTCGACACCATCA-  84

seq1  TAATGAACACAATTACAGAAAATCATATTC-ATAGAAACATCACTTTTTA  147
        ||| || ||| ||||||||||||||||| ||||||||||||| |||||
seq2  -TATG-ACCCAA-TACAGAAAATCATATTCAATAGAAACATCAC-TTTTA  130

seq1  GTAAATTTGAAGAATCCACT-CACTCTTTTACATAAGATGACCAGAAGGT  196
      || ||||  |||||| |||| ||||| |||||||||||||||||||||||
seq2  GT-AATTGAAAGAAT-CACTCCACTC-TTTACATAAGATGACCAGAAGGT  177

seq1  CAAAGGAACCTATAGACAGCACTAGAACAACAGAAAAAATAAAGGCTATT  246
      |||||  |||||||||||||||||| ||||||||||||||||||||||| 
seq2  CAAAG--ACCTATAGACAGCACTAG-ACAACAGAAAAAATAAAGGCTAT-  223

seq1  AACACACCTCAAGTACAGCAATAACAGCAACCAGACAAAAGCAACAAGTA  296
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -ACACA-CTCAAGTACAGCAATAACAGCAACCAGACAAAAGCAACAAGTA  271

seq1  ATTTTCACTTATAATTGAACTTTTGTGTTCACATTCT-CTAAATGAAATC  345
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTTCACTTATAATTGAACTTTTGTGTTCACATTCTCCTAAATGAAATC  321

seq1  AAATAAAAAAAACTGGTTTATTTTTTAAGACATTCCTAAGTTGTTTGCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAAACTGGTTTATTTTTTAAGACATTCCTAAGTTGTTTGCAG  371

seq1  AGAATAGGAAAGCACATTCATATACAAGAGGAGAACTTTTCTTTATTAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGAAAGCACATTCATATACAAGAGGAGAACTTTTCTTTATTAAA  421

seq1  AAATGGATAAAAACAGCATAATGTTTAATAAGAGGGAAAAAGGTCATTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATAAAAACAGCATAATGTTTAATAAGAGGGAAAAAGGTCATTCA  471

seq1  AAAACAATACATTTGATGGATATGTGTGGAATAATTCTTGACAAAAACAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATACATTTGATGGATATGTGTGGAATAATTCTTGACAAAAACAC  521

seq1  CTACCAAAAGAACACAACACCAAACAAGATCATTCTCTGAGAACACGTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAAGAACACAACACCAAACAAGATCATTCTCTGAGAACACGTAG  571

seq1  TTTTTTTTTTTTAATTTTGATTGTTTTATTTATTGAAAATAACTTGTTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATTTTGATTGTTTTATTTATTGAAAATAACTTGTTAT  621

seq1  TCTCACATAATACATCCTAATTACAGTTTCCATTCCTTCTATTGGGATGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATAATACATCCTAATTACAGTTTCCATTCCTTCTATTGGGATGT  671

seq1  GAACAATTGTCATTTCTACTGGAAAATATATCATAGTTAATATGCCTATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTGTCATTTCTACTGGAAAATATATCATAGTTAATATGCCTATT  721

seq1  TCCTTCCTTTTTCATCAGATCCACTTTATGTCACTCATTAGAAGATGACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTTTTCATCAGATCCACTTTATGTCACTCATTAGAAGATGACA  771

seq1  GGATTCTATGGGAGAATAAAATAAAACAAGTTTAAACAAATCTAAGCCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTATGGGAGAATAAAATAAAACAAGTTTAAACAAATCTAAGCCAT  821

seq1  CATAATAGAACAAAATTTTCATAACACATTTTGGTAACTAGACATATGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAACAAAATTTTCATAACACATTTTGGTAACTAGACATATGAA  871

seq1  ATTGAGCTAGGTGAAAAGACCACGAAATCCTACTTCATACCTCATTTGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTAGGTGAAAAGACCACGAAATCCTACTTCATACCTCATTTGAA  921

seq1  TAGTAGTGAATGAAGCATGAGTTAGTGATAGACAATTGAGTGACAGTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGAATGAAGCATGAGTTAGTGATAGACAATTGAGTGACAGTTTT  971

seq1  TCCAAGTTTAGTAAAAAGAATACTTTGTTTTTGAAAATATAATTCAAACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTTAGTAAAAAGAATACTTTGTTTTTGAAAATATAATTCAAACT  1021

seq1  GTCAATTCGATAATCAGAATATCTGGAAGTACTGATACAAATTATTTATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCGATAATCAGAATATCTGGAAGTACTGATACAAATTATTTATT  1071

seq1  CCACATTTGCATGTGAACAAACATAAGAAGAAGCACCTATAAACTATTAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTGCATGTGAACAAACATAAGAAGAAGCACCTATAAACTATTAA  1121

seq1  TGTCAAACTGCAAAAGGAATTCTTTGGACAAAGTGATGTTATATGTCAAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACTGCAAAAGGAATTCTTTGGACAAAGTGATGTTATATGTCAAT  1171

seq1  GGGAATTC  1203
      ||||||||
seq2  GGGAATTC  1179