BAC Information

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BAC

Clone NameB6Ng01-343N05
Chromosome7 (Build37)
Map Location 4,478,890 - 4,613,202
singlet/doubletdoublet
Overlap gene6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik
Upstream geneLOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3
Downstream geneBrsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N05.bB6Ng01-343N05.g
ACCGA126497GA126498
length5811,094
definitionB6Ng01-343N05.b B6Ng01-343N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,478,890 - 4,479,713)(4,612,120 - 4,613,202)
sequence
ctccaacttcaaactccagggtccagacctccttcctcagacctaggtag
gagtttagacccccttcctcatatatgggggcggagtctccgccctcttc
cttctctctggactcagatgctggccacctgcttcaaagcttcctcaccc
ctcgatcatgcagcttcatgcgtaggtcccagtcggcaacaccacgccgg
gcatcgtagcgggaacccaggtagtggcgcaacctcgagtcccaaaggcg
actcatgggaaagacttcaggtcccttctccccaccagaccagaaacgga
acacggcctccagggcatcccgctcgcggaactgcacagccaggaaaaca
tggagagtgacagagacgcagtgagggctccccttccatcccattaggtg
gtagtgattatgggggcggaaaaaatgaggcacagagagcaaagtctccc
ctaaccctaggccacagtagtgggagttacagaggtggaattgtggaatt
aggacacacacacacacacacacacacacacacacacacacactccagcc
tgctcctcctcacaattcctctgaaccgctc
gaattccatgttgagtgagaaagaaagtgtgactgggaaaatgagatgga
ggctcgcacacagcgtcagtcctagcactggggaagaagcaggtggagct
ctgtgagttggaggccagcttgatctacagagtgagttccaggacagcca
ggctgcatcgtgaggaaagggaaagagatggaaaacagttgaggaagata
atcgttaaactctggtgtccacacccatgtgcacacggatgcactcatac
ccaaacacatatgcgtgcacgtgcacacacacacacacacacacacacac
acaaggtggatggcttctggggccctcttgtcttcacacacacacgcaca
cacacacgcacacacacccttctccatacccataaaaatggaacttaaaa
aaaaaaatctaattactgggggtgggggctcatgtgtgccatggtgccca
ggtggaggtcacaggaaaatgtgtaggagtcagttcttcccttcaatcag
tgggttgtggggattgaacttagggggctgatgtgaagactgaccagtct
gggaggccgcaagactctatgtgtggagttcagaaacccatgagcagggc
aagtgatcatgattggcgcagtggtccttgggaaaggctgggcgtccgga
gtgggaaggtggcaggtagtttagaaatacaggagagtgttctgcctgct
gaatgtatggcaggcaggtctgcccgcgctcatgactcctctcaccctga
tccaggaggagctggagttctgtgaaaagctgttacagacctgtttctct
agccctacccgacgacagcatggatcgctgagaccaggtggctctttgct
tttctctccgtgggaaccccaggcctcctgccttccctccttcccaggca
ctcttctcttaagggattgccaggccttgttgggcctgggcctggtctgc
caacccatcttctggtaagcccctgaaggggtttgctgaaaaagatgctg
gcccccttgatccccttcccatgctttctgtcatcctttcttcacatgtc
caaacctggctcttcaaaataaaaaacaatttctccttgctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4478890_4479713
seq2: B6Ng01-343N05.b_46_632

seq1  GAATTCCTCCAACTTCAAACTCCAGGGTCCAGACCTCCTTCCTCAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAACTTCAAACTCCAGGGTCCAGACCTCCTTCCTCAGACCT  50

seq1  AGGTAGGAGTTTAGACCCCCTTCCTCATATATGGGGGCGGAGTCTCCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGAGTTTAGACCCCCTTCCTCATATATGGGGGCGGAGTCTCCGCC  100

seq1  CTCTTCCTTCTCTCTGGACTCAGATGCTGGCCACCTGCTTCAAAGCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTCTCTCTGGACTCAGATGCTGGCCACCTGCTTCAAAGCTTCC  150

seq1  TCACCCCTCGATCATGCAGCTTCATGCGTAGGTCCCAGTCGGCAACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTCGATCATGCAGCTTCATGCGTAGGTCCCAGTCGGCAACACCA  200

seq1  CGCCGGGCATCGTAGCGGGAACCCAGGTAGTGGCGCAACCTCGAGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGGCATCGTAGCGGGAACCCAGGTAGTGGCGCAACCTCGAGTCCCA  250

seq1  AAGGCGACTCATGGGAAAGACTTCAGGTCCCTTCTCCCCACCAGACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGACTCATGGGAAAGACTTCAGGTCCCTTCTCCCCACCAGACCAGA  300

seq1  AACGGAACACGGCCTCCAGGGCATCCCGCTCGCGGAACTGCACAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAACACGGCCTCCAGGGCATCCCGCTCGCGGAACTGCACAGCCAGG  350

seq1  AAAACATGGAGAGTGACAGAGACGCAGTGAGGGCTCCCCTTCCATCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGAGAGTGACAGAGACGCAGTGAGGGCTCCCCTTCCATCCCAT  400

seq1  TAGGTGGTAGTGATTATGGGGGCGGAAAAAATGAGGCACAGAGAGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTAGTGATTATGGGGGCGGAAAAAATGAGGCACAGAGAGCAAAG  450

seq1  TCTCCCCTAACCCTAGGCCACAGTAGTGGGAGTTACAGAGGTGGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTAACCCTAGGCCACAGTAGTGGGAGTTACAGAGGTGGAATTGT  500

seq1  GGAATTAGGACACACACACACACACACACACACACACACACACACACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGAATTAGGACACACACACACACACACACACACACACACACACACACACT  550

seq1  CCAGCCTGCTCCAGCCCCTCAATTCCTCTGAACTGCTCATTTCCATTCTT  600
      ||||||||||||  || | |||||||||||||| ||||            
seq2  CCAGCCTGCTCC-TCCTCACAATTCCTCTGAACCGCTC------------  587

seq1  CCTGCAGCCACCCAAATTTCAAGCAAATTCCACTTCCCTCCAACAAAGGT  650
                                                        
seq2  --------------------------------------------------  587

seq1  GGGCAGCTGTGGCACCTTGAGCAGCCGAAGACTAAGCCAGGGTAGTTGCT  700
                                                        
seq2  --------------------------------------------------  587

seq1  CCTCCAGGCGATCAGGCTCCAGGACCAGATTAGCCAGGTGGCTAGCCTGA  750
                                                        
seq2  --------------------------------------------------  587

seq1  GCGCGCAGGAAGGCAGCTACCGAGGGTCGCAGCAGCGCGTTCCCCCACAG  800
                                                        
seq2  --------------------------------------------------  587

seq1  CTCCAGGAAGGTCTCACTCCGCTC  824
                              
seq2  ------------------------  587

seq1: chr7_4612120_4613202
seq2: B6Ng01-343N05.g_70_1163 (reverse)

seq1  GGGAGC-AGGAGAAA-TGTTTTT--ATTTGAAGAGC--AGTGTGGACATG  44
      |||||| |||||||| |||||||   ||||||||||   || ||||||||
seq2  GGGAGCAAGGAGAAATTGTTTTTTATTTTGAAGAGCCAGGTTTGGACATG  50

seq1  AGAAGAAAGGATGACAGAAAGCAAGGG-AGGGGATCAA-GGGGCCAGCAC  92
       |||||||||||||||||||||| ||| |||||||||| |||||||||| 
seq2  TGAAGAAAGGATGACAGAAAGCATGGGAAGGGGATCAAGGGGGCCAGCAT  100

seq1  CTTTCTCAGC-AACCCCTCCAGGGGGCTACCCAGAGATGGGCTGGCAGGC  141
      |||| ||||| ||||||| ||||||  ||||   ||||||| ||||| | 
seq2  CTTTTTCAGCAAACCCCTTCAGGGGCTTACCAGAAGATGGGTTGGCA-GA  149

seq1  CCAGGCCCAGGCCCAAACAAGGCCTGGCAATCCCTTAAGAG-AGAGTGCC  190
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CCAGGCCCAGGCCC-AACAAGGCCTGGCAATCCCTTAAGAGAAGAGTGCC  198

seq1  TGGGAAGGAGGG-AGGCAGGAGGCCTGGGGTTCCCACGGAGAG-AAAGCA  238
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TGGGAAGGAGGGAAGGCAGGAGGCCTGGGGTTCCCACGGAGAGAAAAGCA  248

seq1  AGGAGCCACCTGGTCTCAGCGATCCATGCTGTCGTC-GGTAGGGCTAGAG  287
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGAGCCACCTGGTCTCAGCGATCCATGCTGTCGTCGGGTAGGGCTAGAG  298

seq1  AAACAGGTCTGTAACAGCTTTTCACAGAACTCCAGCTCCTCCTGGATCAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTCTGTAACAGCTTTTCACAGAACTCCAGCTCCTCCTGGATCAG  348

seq1  GGTGAGAGGAGTCCTGAGCGCGGGCAGACCTGCCTGCCATACATTCAGCA  387
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGGAGTCATGAGCGCGGGCAGACCTGCCTGCCATACATTCAGCA  398

seq1  GGCAGAACACTCTCCTGTATTTCTAAACTACCTGCCACCTTCCCACTCCG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACACTCTCCTGTATTTCTAAACTACCTGCCACCTTCCCACTCCG  448

seq1  GACGCCCAGCCTTTCCCAAGGACCACTGCGCCAATCATGATCACTTGCCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCCAGCCTTTCCCAAGGACCACTGCGCCAATCATGATCACTTGCCC  498

seq1  TGCTCATGGGTTTCTGAACTCCACACATAGAGTCTTGCGGCCTCCCAGAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGGTTTCTGAACTCCACACATAGAGTCTTGCGGCCTCCCAGAC  548

seq1  TGGTCAGTCTTCACATCAGCCCCCTAAGTTCAATCCCCACAACCCACTGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTCTTCACATCAGCCCCCTAAGTTCAATCCCCACAACCCACTGA  598

seq1  TTGAAGGGAAGAACTGACTCCTACACATTTTCCTGTGACCTCCACCTGGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGAAGAACTGACTCCTACACATTTTCCTGTGACCTCCACCTGGG  648

seq1  CACCATGGCACACATGAGCCCCCACCCCCAGTAATTAGATTTTTTTTTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGCACACATGAGCCCCCACCCCCAGTAATTAGATTTTTTTTTTT  698

seq1  AAGTTCCATTTTTATGGGTATGGAGAAGGGTGTGTGTGCGTGTGTGTGTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATTTTTATGGGTATGGAGAAGGGTGTGTGTGCGTGTGTGTGTG  748

seq1  CGTGTGTGTGTGAAGACAAGAGGGCCCCAGAAGCCATCCACCTTGTGTGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGTGAAGACAAGAGGGCCCCAGAAGCCATCCACCTTGTGTGT  798

seq1  GTGTGTGTGTGTGTGTGTGTGTGCACGTGCACGCATATGTGTTTGGGTAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGCACGTGCACGCATATGTGTTTGGGTAT  848

seq1  GAGTGCATCCGTGTGCACATGGGTGTGGACACCAGAGTTTAACGATTATC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATCCGTGTGCACATGGGTGTGGACACCAGAGTTTAACGATTATC  898

seq1  TTCCTCAACTGTTTTCCATCTCTTTCCCTTTCCTCACGATGCAGCCTGGC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAACTGTTTTCCATCTCTTTCCCTTTCCTCACGATGCAGCCTGGC  948

seq1  TGTCCTGGAACTCACTCTGTAGATCAAGCTGGCCTCCAACTCACAGAGCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGATCAAGCTGGCCTCCAACTCACAGAGCT  998

seq1  CCACCTGCTTCTTCCCCAGTGCTAGGACTGACGCTGTGTGCGAGCCTCCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTTCTTCCCCAGTGCTAGGACTGACGCTGTGTGCGAGCCTCCA  1048

seq1  TCTCATTTTCCCAGTCACACTTTCTTTCTCACTCAACATGGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTCCCAGTCACACTTTCTTTCTCACTCAACATGGAATTC  1094