BAC Information

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BAC

Clone NameB6Ng01-344F13
Chromosome7 (Build37)
Map Location 122,529,903 - 122,669,609
singlet/doubletdoublet
Overlap geneSox6
Upstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F13.bB6Ng01-344F13.g
ACCGA126859GA126860
length1,1811,019
definitionB6Ng01-344F13.b B6Ng01-344F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,668,410 - 122,669,609)(122,529,903 - 122,530,919)
sequence
gaattcagtcagaagcccagatgtttgaaaaggagacagcagacacactg
tagctgtgttttaaagacagctcctttgcctctgccctcttcacagctcc
ctcccaattaaacctagctgtgctgtttagcttgtacatgttcccacgca
catccttgtaccctgtgttattattgctgacttgaaacatcccaacaagg
aacttcactcctatggactgagctgggccattcttcctggctttcagtca
cctcttgatacggaattgacaggatttagtgccacacgcaacaaatcacc
tgttagtctgtgcaagctcccccactctcctggactcagccttactcatg
tttgtgtgcctctgtggtcctactaaggcaacctcttgtcaagtgttgat
agaaaacaaaatgtattggccattagtaaaaactgataatcctcttgaat
ttggtttcaaagaagggttgttcaatgctcaggaattcaaagaagcgaga
aaagcctaattttacttgcaatagatttacactaagaaatttaatgtctt
tgttaatgaatgcatttctgtctttatgcagtttttaaaatgtaatgcct
agaaataaagtgtccttacgtcaatctcttgaatgtctcccctttgaagt
aattatgtgaaaagactgtgtgtgacagtatcagggacaacttgtttaat
ttaattttatattttaggcttatttttattttttagacgagtattgtgac
cccatttgggaattttaatttgtatcttatttagtctgcagtgtgacacc
agttaattgtgtgctactttgtagtaactacatgttaactctgttggaag
taatggtaattatactgtaattgatacagttctcccacagctttggaaag
ccatacaattaacacatatcgccacagttggatactttcttttgtccttt
gtgaacataccatcttggagtactattttcaacaaggtcctaaatatttt
ttctttgaaatgcctataacattacctagcagtgagaatagtcctaagtt
tttatttttaacctccaaagaagctctttctatcagaatgtaattcaaag
gttattttgatattcatacaaccatggtgaattcttagctatggcctctt
ccctctggaagctgcagtaaatacacagatc
gaattctttacatattaagactcgaggcttttcccttttttatatatttc
atggccttgtaaacacatttaacttttataggtgaaatctttcactttat
gacatttgcgattggtgcaatatttatgcaaaccatcctaattatcttta
gattgttgtgacagaattctgattttactttttaatttgcccacaattta
atgcagtatatggtatatgggaagaatctaaattatatgactcccagatc
tccacacaggaaatactagttctcttatgaagaaacataatgaagagtgt
gtattattttctactaaactaggtctgtttttttccacagttcattgctg
cttcatgtagtcctttttatttcttgattccagagctggaatgtaaggta
aaagaagaccttcaatgtggcagccattcacccaggataaagtgtgctgg
ctgttcatttccattctgtgtgcaactcttctggttttccgagtcagtct
gcaatgttccattcaccactagagtaatatgttctgtttggcaaggacct
tacctgtaggtttgcttcattctgtccactaaaaagccaagtagcatgac
atttaagaacatagttctagctgtatgaccttggagcacctattctacat
ctctgatgctcaaggctcaccttcactgtagaaccttcatataatactac
taatatacaaatgaccatataaacaaaatacacttaatcaatgttagctt
tatcacaccccaaaggtcttgtcattccaagggctttctgatttgtatca
gatgaagaaagagtttatagacacatctactttcaaattctgtaatattt
atacatgcaaaataatgtgctaatttatttattacacataaatgtgtact
tattttagaaaaaccataaagaataatatattcaggcacagatagataga
taggtagatagataaattagatagattagatagatagatagatagaagat
agatgtaggttatgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122668410_122669609
seq2: B6Ng01-344F13.b_51_1231 (reverse)

seq1  GATCTTGTGTATTTTACTGCAGCCTTCTCCCAGGAGGAAAGAAGCACCAT  50
      |||| |||||| ||||||||||    || ||| |||| |||| |  ||||
seq2  GATC-TGTGTA-TTTACTGCAG----CTTCCA-GAGGGAAGAGG--CCAT  41

seq1  AAAGCTAAAGGATATCACAAATGGGTTTGTAATGAAAATCACAAATAA-C  99
        ||||||  ||  ||||  ||||  |||| ||||| |||| |||||| |
seq2  --AGCTAA--GAATTCAC-CATGG--TTGT-ATGAATATCA-AAATAACC  82

seq1  TTTGAATTACA-TCTGATTAGAAAAGGAGCTTCCTTTGAG--TGAAAAT-  145
      ||||||||||| ||||| ||||||  ||||||| || |||  | ||||| 
seq2  TTTGAATTACATTCTGA-TAGAAA--GAGCTTCTTTGGAGGTTAAAAATA  129

seq1  AAAACTTAGGAACTATCCTCACTTGCTA-GTAATGTTAATAGGCATTTCA  194
      |||||||||| ||||| ||||| ||||| |||||||| ||||||||||||
seq2  AAAACTTAGG-ACTATTCTCAC-TGCTAGGTAATGTT-ATAGGCATTTCA  176

seq1  AAGAAAAAATATTTAGGAACCTTGTTGAAAATAGTACTCCAAGATGGTAT  244
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGAAAAAATATTTAGG-ACCTTGTTGAAAATAGTACTCCAAGATGGTAT  225

seq1  G-TCACAAAGGACAAAAGAAAGTATCCAACTGTGGCGATATGTGTTAATT  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAAGGACAAAAGAAAGTATCCAACTGTGGCGATATGTGTTAATT  275

seq1  GTATGGCTTTCCAAAGCTGTGGGAGAACTGGTATCAATTACAGTATAATT  343
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATGGCTTTCCAAAGCTGTGGGAGAACT-GTATCAATTACAGTATAATT  324

seq1  ACCATTACTTCCAACAGAGTTAACATGTAGTTACTACAAAGTAGCACACA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACTTCCAACAGAGTTAACATGTAGTTACTACAAAGTAGCACACA  374

seq1  ATTAACTGGTGTCACACTGCAGACTAAATAAGATACAAATTAAAATTCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGGTGTCACACTGCAGACTAAATAAGATACAAATTAAAATTCCC  424

seq1  AAATGGGGTCACAATACTCGTCTAAAAAATAAAAATAAGCCTAAAATATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGTCACAATACTCGTCTAAAAAATAAAAATAAGCCTAAAATATA  474

seq1  AAATTAAATTAAACAAGTTGTCCCTGATACTGTCACACACAGTCTTTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTAAACAAGTTGTCCCTGATACTGTCACACACAGTCTTTTCA  524

seq1  CATAATTACTTCAAAGGGGAGACATTCAAGAGATTGACGTAAGGACACTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACTTCAAAGGGGAGACATTCAAGAGATTGACGTAAGGACACTT  574

seq1  TATTTCTAGGCATTACATTTTAAAAACTGCATAAAGACAGAAATGCATTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGGCATTACATTTTAAAAACTGCATAAAGACAGAAATGCATTC  624

seq1  ATTAACAAAGACATTAAATTTCTTAGTGTAAATCTATTGCAAGTAAAATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAAGACATTAAATTTCTTAGTGTAAATCTATTGCAAGTAAAATT  674

seq1  AGGCTTTTCTCGCTTCTTTGAATTCCTGAGCATTGAACAACCCTTCTTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCTCGCTTCTTTGAATTCCTGAGCATTGAACAACCCTTCTTTG  724

seq1  AAACCAAATTCAAGAGGATTATCAGTTTTTACTAATGGCCAATACATTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATTCAAGAGGATTATCAGTTTTTACTAATGGCCAATACATTTT  774

seq1  GTTTTCTATCAACACTTGACAAGAGGTTGCCTTAGTAGGACCACAGAGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATCAACACTTGACAAGAGGTTGCCTTAGTAGGACCACAGAGGC  824

seq1  ACACAAACATGAGTAAGGCTGAGTCCAGGAGAGTGGGGGAGCTTGCACAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACATGAGTAAGGCTGAGTCCAGGAGAGTGGGGGAGCTTGCACAG  874

seq1  ACTAACAGGTGATTTGTTGCGTGTGGCACTAAATCCTGTCAATTCCGTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGGTGATTTGTTGCGTGTGGCACTAAATCCTGTCAATTCCGTAT  924

seq1  CAAGAGGTGACTGAAAGCCAGGAAGAATGGCCCAGCTCAGTCCATAGGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGTGACTGAAAGCCAGGAAGAATGGCCCAGCTCAGTCCATAGGAG  974

seq1  TGAAGTTCCTTGTTGGGATGTTTCAAGTCAGCAATAATAACACAGGGTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCCTTGTTGGGATGTTTCAAGTCAGCAATAATAACACAGGGTAC  1024

seq1  AAGGATGTGCGTGGGAACATGTACAAGCTAAACAGCACAGCTAGGTTTAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGCGTGGGAACATGTACAAGCTAAACAGCACAGCTAGGTTTAA  1074

seq1  TTGGGAGGGAGCTGTGAAGAGGGCAGAGGCAAAGGAGCTGTCTTTAAAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGAGCTGTGAAGAGGGCAGAGGCAAAGGAGCTGTCTTTAAAAC  1124

seq1  ACAGCTACAGTGTGTCTGCTGTCTCCTTTTCAAACATCTGGGCTTCTGAC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAGTGTGTCTGCTGTCTCCTTTTCAAACATCTGGGCTTCTGAC  1174

seq1  TGAATTC  1200
      |||||||
seq2  TGAATTC  1181

seq1: chr7_122529903_122530919
seq2: B6Ng01-344F13.g_67_1085

seq1  GAATTCTTTACATATTAAGACTCGAGGCTTTTCCCTTTTTTATATATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATATTAAGACTCGAGGCTTTTCCCTTTTTTATATATTTC  50

seq1  ATGGCCTTGTAAACACATTTAACTTTTATAGGTGAAATCTTTCACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGTAAACACATTTAACTTTTATAGGTGAAATCTTTCACTTTAT  100

seq1  GACATTTGCGATTGGTGCAATATTTATGCAAACCATCCTAATTATCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGCGATTGGTGCAATATTTATGCAAACCATCCTAATTATCTTTA  150

seq1  GATTGTTGTGACAGAATTCTGATTTTACTTTTTAATTTGCCCACAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGTGACAGAATTCTGATTTTACTTTTTAATTTGCCCACAATTTA  200

seq1  ATGCAGTATATGGTATATGGGAAGAATCTAAATTATATGACTCCCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATATGGTATATGGGAAGAATCTAAATTATATGACTCCCAGATC  250

seq1  TCCACACAGGAAATACTAGTTCTCTTATGAAGAAACATAATGAAGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGGAAATACTAGTTCTCTTATGAAGAAACATAATGAAGAGTGT  300

seq1  GTATTATTTTCTACTAAACTAGGTCTGTTTTTTTCCACAGTTCATTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTTTCTACTAAACTAGGTCTGTTTTTTTCCACAGTTCATTGCTG  350

seq1  CTTCATGTAGTCCTTTTTATTTCTTGATTCCAGAGCTGGAATGTAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTAGTCCTTTTTATTTCTTGATTCCAGAGCTGGAATGTAAGGTA  400

seq1  AAAGAAGACCTTCAATGTGGCAGCCATTCACCCAGGATAAAGTGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACCTTCAATGTGGCAGCCATTCACCCAGGATAAAGTGTGCTGG  450

seq1  CTGTTCATTTCCATTCTGTGTGCAACTCTTCTGGTTTTCCGAGTCAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTTCCATTCTGTGTGCAACTCTTCTGGTTTTCCGAGTCAGTCT  500

seq1  GCAATGTTCCATTCACCACTAGAGTAATATGTTCTGTTTGGCAAGGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTCCATTCACCACTAGAGTAATATGTTCTGTTTGGCAAGGACCT  550

seq1  TACCTGTAGGTTTGCTTCATTCTGTCCACTAAAAAGCCAAGTAGCATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTAGGTTTGCTTCATTCTGTCCACTAAAAAGCCAAGTAGCATGAC  600

seq1  ATTTAAGAACATAGTTCTAGCTGTATGACCTTGGAGCACCTATTCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAACATAGTTCTAGCTGTATGACCTTGGAGCACCTATTCTACAT  650

seq1  CTCTGATGCTCAAGGCTCACCTTCACTGTAGAACCTTCATATAATACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCTCAAGGCTCACCTTCACTGTAGAACCTTCATATAATACTAC  700

seq1  TAATATACAAATGACCATATAAACAAAATACACTTAATCAATGTTAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAAATGACCATATAAACAAAATACACTTAATCAATGTTAGCTT  750

seq1  TATCACACCCCAAAGGTCTTGTCATTCCAAGGGCTTTCTGATTTGTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACCCCAAAGGTCTTGTCATTCCAAGGGCTTTCTGATTTGTATCA  800

seq1  GATGAAGAAAGAGTTTATAGACACATCTACTTTCAAATTCTGTAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAAGAGTTTATAGACACATCTACTTTCAAATTCTGTAATATTT  850

seq1  ATACATGCAAAATAATGTGCTAATTTATTTATTACACATAAATGTGTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCAAAATAATGTGCTAATTTATTTATTACACATAAATGTGTACT  900

seq1  TATTTTAGAAAAACCATAAAGAATAATATATTCAGGCACAGATAGATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAAAAACCATAAAGAATAATATATTCAGGCACAGATAGATAGA  950

seq1  TAGGTAGATAGATAAA-TAGATAGA-TAGATAGATAGATAGATAGAAGAT  998
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TAGGTAGATAGATAAATTAGATAGATTAGATAGATAGATAGATAGAAGAT  1000

seq1  AGATGTA-GATATGTGTGTT  1017
      ||||||| | ||||| ||||
seq2  AGATGTAGGTTATGT-TGTT  1019