BAC Information

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BAC

Clone NameB6Ng01-344H13
Chromosome7 (Build37)
Map Location 12,034,651 - 12,152,532
singlet/doubletdoublet
Overlap geneLOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926
Upstream geneZik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742
Downstream geneLOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344H13.bB6Ng01-344H13.g
ACCGA126949GA126950
length1,2161,125
definitionB6Ng01-344H13.b B6Ng01-344H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,034,651 - 12,035,886)(12,151,287 - 12,152,532)
sequence
ggaattccagctaaaggaagcaatacacattgtagaagaggcagatagga
agtatgaagaggtggctcataagttggtgattattgaaggagaatgggaa
cgcacagaggaacgtgctgagctggcagagacccgctggcagaggcccgt
tcccgagagttggaagagcaggtcagactgatggaccagaacctgaagtg
tctgagtgctgctgaagaaaagtactctcaaaaagaagacaagtatgaag
aagaaataaagattcgtactgataaactcaagaagccagagacctgttct
gagtttgctgaaagatcggtaaccaaactggagaagaccattgatgactt
ggaagataaactcaagtaccccaaagaggagcatctctctatacaaaggt
tgctggaccctgctggacctgagcgagaagtaaaccttccccatccctgc
cccgcggccactcctccctctgaccttgactctgccagaggacagcatcc
ctgaagctgactttgaaactgagggctgatctttttaactgaaggctgct
tttcctcctgccaccccctctactcctcttgtcttttgcacaaacctgtg
tcagcctcttcccagagttccagcgggaggggttgaacaccttttggaac
aatatttaagggactgtgagcacaacacagtgtcttcaatgcagttgtga
tatgcacattgtgattactttctgtcttagcaactaattttaacattcca
agcacttctgcttcttggagcagcaagattttagcctaatggatactgtc
tcgccatggaggagaaacccaggattgggcctgccttcctgagagccagc
agagctcagcaggctcctctgagggagagctcactgctctgcaccaagtc
ttagccagacaacaggagattccaggaaagttagccaaaaacaaaaaact
gttctgggctgtgaaggttttcagctttggtttctttgaacactaattta
cactattttattttgtactttcccatcagatgtgacaaataagaacagtg
aagaagtctgaagaagcccgactccatggctcatgatgtaggcaatgtgc
tacaatcagccagcctgagcccagatggtcacacctctatcgttctaact
gatcagatgtcatgcacccttatgttgtgctgaacttcttagaggtcacc
tggtcccccaagggag
gaattctcactgccaatggcttggccaagctaacccaacccccaaaaagc
aaaacaaaaaaaaaaatcaaataatgtaaaattttaaaagtttttttttc
atataatctattcaagatttctctagcactgactgatacaaagcacaatg
agatggcactttagagacctcagctttaggaaagggagatgagatgatgt
tcatgtggctaaatcagtgacacaaacacaattttcctttccctgtctac
cgtgggggcaggtgaactataagaggtcagcacaacactaaggggcggta
tgatccatctttgagcagttaggaaagggatagagctgcgacaagtttgg
tctcagggctggtgctaaatggtagcacgtttgcctaacattcatgaggc
catgggaggtggggcttctcagatttctcactgtcttatttggtcacatc
tgatggaaaaagtacaaaataaaaataagggtaaagttgttcaaagaaac
caaagctgaaaaccttcacagcccggaacagttttttgtttttggctgac
ttcctagaatctccctgttgtctggctaagacttggtgcagagcactgag
ctctcccacagaggagcctgcctgagctctgctggctctcaggaaggcag
gcccaatcctgggtttctcctccatggcgagacagtatccattaggctaa
aatgtgctgctccaagcagcagaagtgcttagaatgttaaaaatggttgc
taagactgaaagtaatcacaatgtgcatatcacaactgcattgaagacac
tgtgttgtgctcacattcccttaaatattgttccaaaaggtgttcagccc
ctcccgctggaaatctgggaagaggctgatgcaggtttgtgcaaaagaca
agaggagtagagggggtggcaggagggaaagcagtcttcagttaaaagat
cagccctcagtttcaaagtcagcttcagggatgctgtcctctggcagagt
caggtcagagggagagttgcgcgggcagattggggagtttacttctagct
cagtcagcaggtcagcatctttgtgtacgaaatgctctcttgggcctgag
tttatcttcagtcacattgtcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12034651_12035886
seq2: B6Ng01-344H13.b_50_1265

seq1  GGAATTCCAGCTAAAGGAAGCAATACACATTGTAGAAGAGGCAGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCAGCTAAAGGAAGCAATACACATTGTAGAAGAGGCAGATAGGA  50

seq1  AGTATGAAGAGGTGGCTCATAAGTTGGTGATTATTGAAGGAGAATGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAGAGGTGGCTCATAAGTTGGTGATTATTGAAGGAGAATGGGAA  100

seq1  CGCACAGAGGAACGTGCTGAGCTGGCAGAGACCCGCTGGCAGAGGCCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGAGGAACGTGCTGAGCTGGCAGAGACCCGCTGGCAGAGGCCCGT  150

seq1  TCCCGAGAGTTGGAAGAGCAGGTCAGACTGATGGACCAGAACCTGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGAGTTGGAAGAGCAGGTCAGACTGATGGACCAGAACCTGAAGTG  200

seq1  TCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAG  250

seq1  AAGAAATAAAGATTCGTACTGATAAACTCAAGAAGCCAGAGACCTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAAGATTCGTACTGATAAACTCAAGAAGCCAGAGACCTGTTCT  300

seq1  GAGTTTGCTGAAAGATCGGTAACCAAACTGGAGAAGACCATTGATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTGAAAGATCGGTAACCAAACTGGAGAAGACCATTGATGACTT  350

seq1  GGAAGATAAACTCAAGTACCCCAAAGAGGAGCATCTCTCTATACAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAAACTCAAGTACCCCAAAGAGGAGCATCTCTCTATACAAAGGT  400

seq1  TGCTGGACCCTGCTGGACCTGAGCGAGAAGTAAACCTTCCCCATCCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACCCTGCTGGACCTGAGCGAGAAGTAAACCTTCCCCATCCCTGC  450

seq1  CCCGCGGCCACTCCTCCCTCTGACCTTGACTCTGCCAGAGGACAGCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGGCCACTCCTCCCTCTGACCTTGACTCTGCCAGAGGACAGCATCC  500

seq1  CTGAAGCTGACTTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTGACTTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCT  550

seq1  TTTCCTCCTGCCACCCCCTCTACTCCTCTTGTCTTTTGCACAAACCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTGCCACCCCCTCTACTCCTCTTGTCTTTTGCACAAACCTGTG  600

seq1  TCAGCCTCTTCCCAGAGTTCCAGCGGGAGGGGTTGAACACCTTTTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTTCCCAGAGTTCCAGCGGGAGGGGTTGAACACCTTTTGGAAC  650

seq1  AATATTTAAGGGACTGTGAGCACAACACAGTGTCTTCAATGCAGTTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAGGGACTGTGAGCACAACACAGTGTCTTCAATGCAGTTGTGA  700

seq1  TATGCACATTGTGATTACTTTCTGTCTTAGCAACTAATTTTAACATTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATTGTGATTACTTTCTGTCTTAGCAACTAATTTTAACATTCCA  750

seq1  AGCACTTCTGCTTCTTGGAGCAGC-ACATTTTAGCCTAATGGATACTGTC  799
      |||||||||||||||||||||||| | |||||||||||||||||||||||
seq2  AGCACTTCTGCTTCTTGGAGCAGCAAGATTTTAGCCTAATGGATACTGTC  800

seq1  TCGCCATGGAGGAGAAACCCAGGATTGGGCCTGCCTTCCTGAGAGCCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATGGAGGAGAAACCCAGGATTGGGCCTGCCTTCCTGAGAGCCAGC  850

seq1  AGAGCTCAGGCAGGCTCCTCTGAGGGAGAGCTCACTGCTCTGCACCAAGT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCA-GCAGGCTCCTCTGAGGGAGAGCTCACTGCTCTGCACCAAGT  899

seq1  CTTAGCCAGACAACAGGGAGATTCCAGG-AAGTTAGCCAAAAACAAAAAA  948
      ||||||||||||||| |||||||||||| ||||||||||||||| |||||
seq2  CTTAGCCAGACAACA-GGAGATTCCAGGAAAGTTAGCCAAAAAC-AAAAA  947

seq1  ACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTTTCTTTGAACACTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTGTTCTGGGCTGTGAAGGTTTTCAGCTTTGGTTTCTTTGAACACTAAT  997

seq1  TTACACTTATTTTTATTTTGTACTTTTCCCATCAGATGTGACCAAATAAG  1048
      |||||||   ||||||||||||| ||||||||||||||||| ||||||||
seq2  TTACACT--ATTTTATTTTGTAC-TTTCCCATCAGATGTGA-CAAATAAG  1043

seq1  -ACAGTG-AGAAGTCTG-AGAAGCCCGACCTCCCATGGCCTCATGAATGT  1095
       |||||| ||||||||| |||||||||||   |||||| |||||| ||| 
seq2  AACAGTGAAGAAGTCTGAAGAAGCCCGAC--TCCATGG-CTCATG-ATG-  1088

seq1  TAGGCAAATGTGCTACCATTCAGCCCCAGCCCTGAGCCCAGATTTGTCAC  1145
      ||||| ||||||||| || ||||  |||| |||||||||||| | |||||
seq2  TAGGC-AATGTGCTA-CAATCAG--CCAG-CCTGAGCCCAGA-TGGTCAC  1132

seq1  ACCTCTATCCCTTTCCTAACTGATCAAAGATGGGTCATGCCACCCCTTAG  1195
      |||||||||    | ||||||||||  ||||  |||||||   |||||| 
seq2  ACCTCTATC---GTTCTAACTGATC--AGAT--GTCATGC--ACCCTTA-  1172

seq1  TGTTGTGCTG-ACCTCTTAGAGGTCACCTG--CCCCCAAGGGAG  1236
      |||||||||| || ||||||||||||||||  ||||||||||||
seq2  TGTTGTGCTGAACTTCTTAGAGGTCACCTGGTCCCCCAAGGGAG  1216

seq1: chr7_12151287_12152532
seq2: B6Ng01-344H13.g_66_1190 (reverse)

seq1  AGAAGACAAGTATGAAGAAGAAATAAAGATTCGTACTGATAAACTCAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCAGAGACCTGTTCTGAGTTTGCTGAAAGATCGGTAACCAAACTGGAG  100
                                                      ||
seq2  ------------------------------------------------AG  2

seq1  AAGACCATTGATGACTTGGAAGATAAACTCAAGTGCCCCAAAGAGGAGCA  150
      ||||| ||   |||||  ||||||||||||| |    || |||| |||||
seq2  AAGACAAT--GTGACT--GAAGATAAACTCAGG----CCCAAGA-GAGCA  43

seq1  TTTCTGTACACAAAGGATGCTGGACCCTGCTGGACCTGAGCTAGAAGTAA  200
      |||| ||||||||| |||||||   |||||||   |||||||||||||||
seq2  TTTC-GTACACAAA-GATGCTG--ACCTGCTG--ACTGAGCTAGAAGTAA  87

seq1  ACCTTCCCCATTCCTGCCCCGCGGCCACTCCTCCCTCTGACCTTGACTCT  250
      ||  |||||| | ||| ||||| || ||| |||||||||||| |||||||
seq2  AC--TCCCCAAT-CTG-CCCGC-GCAACT-CTCCCTCTGACC-TGACTCT  130

seq1  GCCAGAGGACAGCATCCCTGAAGCTGACTTTGAAACTGAGGGCTGATCTT  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCAGAGGACAGCATCCCTGAAGCTGACTTTGAAACTGAGGGCTGATC-T  179

seq1  TTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCCCTCTACTCCTCTTGTC  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGAAGACTGCTTTCCCTCCTGCCACCCCCTCTACTCCTCTTGTC  229

seq1  TTTTGCACAAACCTGCATCAGCCTCTTCCCAGATTTCCAGCGGGAGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACAAACCTGCATCAGCCTCTTCCCAGATTTCCAGCGGGAGGGGC  279

seq1  TGAACACCTTTTGGAACAATATTTAAGGGAATGTGAGCACAACACAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCTTTTGGAACAATATTTAAGGGAATGTGAGCACAACACAGTGT  329

seq1  CTTCAATGCAGTTGTGATATGCACATTGTGATTACTTTCAGTCTTAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGCAGTTGTGATATGCACATTGTGATTACTTTCAGTCTTAGCAA  379

seq1  CCATTTTTAACATTCTAAGCACTTCTGCTGCTTGGAGCAGCACATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTAACATTCTAAGCACTTCTGCTGCTTGGAGCAGCACATTTTAG  429

seq1  CCTAATGGATACTGTCTCGCCATGGAGGAGAAACCCAGGATTGGGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGATACTGTCTCGCCATGGAGGAGAAACCCAGGATTGGGCCTGC  479

seq1  CTTCCTGAGAGCCAGCAGAGCTCAGGCAGGCTCCTCTGTGGGAGAGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGAGCCAGCAGAGCTCAGGCAGGCTCCTCTGTGGGAGAGCTCA  529

seq1  GTGCTCTGCACCAAGTCTTAGCCAGACAACAGGGAGATTCTAGGAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGCACCAAGTCTTAGCCAGACAACAGGGAGATTCTAGGAAGTCA  579

seq1  GCCAAAAACAAAAAACTGTTCCGGGCTGTGAAGGTTTTCAGCTTTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAACAAAAAACTGTTCCGGGCTGTGAAGGTTTTCAGCTTTGGTTT  629

seq1  CTTTGAACAACTTTACCCTTATTTTTATTTTGTACTTTTTCCATCAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACAACTTTACCCTTATTTTTATTTTGTACTTTTTCCATCAGATG  679

seq1  TGACCAAATAAGACAGTGAGAAATCTGAGAAGCCCCACCTCCCATGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAATAAGACAGTGAGAAATCTGAGAAGCCCCACCTCCCATGGCCT  729

seq1  CATGAATGTTAGGCAAACGTGCTACCATTTAGCACCAGCCCTGAGACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGTTAGGCAAACGTGCTACCATTTAGCACCAGCCCTGAGACCAA  779

seq1  ACTTGTCGCAGCTCTATCCCTTTCCTAACTGCTCAAAGATGGATCATACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCGCAGCTCTATCCCTTTCCTAACTGCTCAAAGATGGATCATACC  829

seq1  GCCCCTTAGTGTTGTGCTGACCTCTTATAGTTCACCTGCCCCCACGGTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTAGTGTTGTGCTGACCTCTTATAGTTCACCTGCCCCCACGGTAG  879

seq1  ACAGGGAAAGGAAAATTGTGTTTGTGTCACTGATTTAGCCACATGAACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAAGGAAAATTGTGTTTGTGTCACTGATTTAGCCACATGAACAT  929

seq1  CATCTCATCTCCCTTTCCTAAAGCTGAGGTCTCTAAAGTGCCATCTCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCTCCCTTTCCTAAAGCTGAGGTCTCTAAAGTGCCATCTCATT  979

seq1  GTGCTTTGTATCAGTCAGTGCTAGAGAAATCTTGAATAGATTATATGAAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTATCAGTCAGTGCTAGAGAAATCTTGAATAGATTATATGAAA  1029

seq1  AAAAAACTTTTAAAATTTTACATTATTTGATTTTTTTTTTTGTTTTGCTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTTTAAAATTTTACATTATTTGATTTTTTTTTTTGTTTTGCTT  1079

seq1  TTTGGGGGTTGGGTTAGCTTGGCCAAGCCATTGGCAGTGAGAATTC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTTGGGTTAGCTTGGCCAAGCCATTGGCAGTGAGAATTC  1125