BAC Information

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BAC

Clone NameB6Ng01-344N13
Chromosome7 (Build37)
Map Location 7,368,945 - 7,491,043
singlet/doubletdoublet
Overlap geneVmn2r-ps36, V2r5, LOC100041883, EG628117
Upstream geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Downstream geneVmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344N13.bB6Ng01-344N13.g
ACCGA127227GA127228
length1,092844
definitionB6Ng01-344N13.b B6Ng01-344N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,368,945 - 7,370,034)(7,490,200 - 7,491,043)
sequence
gaattccattaaaccgtagtttaaatatcaaatctttcttttcaacgatg
ccatcttccatgaattttcaatgagtaaaatgtggatgttaatgaagaat
gtgttccttaaagggacagtgctaatgattatatttctatgaagactgac
ttagggaagtgattgtttttgtcaatgcattttagatccatttggctccc
tttatgagaagagaattgataaatgtgaaatatttactgtagctgcaaac
actcaattgtccttttgaaaagtcgttttctagaaagcagcgtaattaaa
gcatctgcctctcattctgttttccagaattttctgagtccaggacctca
atcagaactgcacacaaagggcaatctccgaaagaaattaggttcatgca
aatgtcagtagttttacctttcccttccataactacaatataaatagcat
gttgacatagctacaagcttatttcatttcattttttatttattattact
caattttttttacagtctagtggttatccccctcctggttttcccctcct
gactcttcctcatctaacaactcctccgccatctccaagatgatatacct
acctccccaacgcccagcccttcctaatccctggggacttaagtctctct
ggggttaggtgtgtctctcccactgatgctagaccaggcagtcttatgct
gcatatttgatgggggcttcacatcagctagtgtatgatctctggttaga
ggctcaatgtctgagagatcttgcttgtccaggtttgttgagaatgctgg
tctttctatgggtcaccctcctcagcttcttacaactattcccaaattca
tccagagagtccctgggcttctgatcattgttggatataatatatttgta
tttgacagcagaaaaaggaacatttcccttcatagacttatcggccaata
acttgaagaacagatgaaaaaaagtcagtattttatgttgttgtgctctt
acttgaaatcaaaaaaatatgttctgatttcatctttgctgattatttag
tagtctgggtttctcactatatttgatttggagatgagtttc
gaattctcagattgaaaggagggacattcttctagcttggattgactcca
gctgtgatggtttcaatgaactcaccctccagaaagtcatagacttgcat
acttgttccttattggtggaacactttagagataataatgatgtatagcc
ttgttggaggaggtgtgtccctgggggtgggcttgtatgtctcaaaagct
ctttccattcccagttaactctctctccctggtactgtactatggatcag
gatgtaagctctcagcaactgttccagtgctgtgtgtgcctgtatccatc
ctccctgacatggaggttacagattgaccctctgaggtgtaagccccaat
aaactccttgttatcataagttgccttggtcatggtgtctcttcacagta
atagaaaagtaattaagccactatgtcaacttaactcatgttgctgagtg
atgagcacagtagtcggagggaacatgaaactggctatcaatagaatagg
ttcacagcctggtatactctgaggtagaaagctaagtgggaatgacttaa
gggtaccaggaatccctgacaaggaggattcatataaattcaactttctc
cattattcaggactgtttatcctttgaggatgtggctgtgtacttctact
gggaggaatggacactgcttgatgactctcaaaggatcctgcaccagacg
ttgatgtcagaaatatgaacactcatgtatttacttgtaagaccctgccc
tgccatcatttcagagcatgtctaggctttcctttgttttttggtttttg
gttttttgttttgttttgtttgttttttttggaggggggggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7368945_7370034
seq2: B6Ng01-344N13.b_52_1143

seq1  GAATTCCATTAAACCGTAGTTTAAATATCAAATCTTTCTTTTCAACGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAACCGTAGTTTAAATATCAAATCTTTCTTTTCAACGATG  50

seq1  CCATCTTCCATGAATTTTCAATGAGTAAAATGTGGATGTTAATGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCATGAATTTTCAATGAGTAAAATGTGGATGTTAATGAAGAAT  100

seq1  GTGTTCCTTAAAGGGACAGTGCTAATGATTATATTTCTATGAAGACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTTAAAGGGACAGTGCTAATGATTATATTTCTATGAAGACTGAC  150

seq1  TTAGGGAAGTGATTGTTTTTGTCAATGCATTTTAGATCCATTTGGCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAGTGATTGTTTTTGTCAATGCATTTTAGATCCATTTGGCTCCC  200

seq1  TTTATGAGAAGAGAATTGATAAATGTGAAATATTTACTGTAGCTGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGAAGAGAATTGATAAATGTGAAATATTTACTGTAGCTGCAAAC  250

seq1  ACTCAATTGTCCTTTTGAAAAGTCGTTTTCTAGAAAGCAGCGTAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTGTCCTTTTGAAAAGTCGTTTTCTAGAAAGCAGCGTAATTAAA  300

seq1  GCATCTGCCTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCTCTCATTCTGTTTTCCAGAATTTTCTGAGTCCAGGACCTCA  350

seq1  ATCAGAACTGCACACAAAGGGCAATCTCCGAAAGAAATTAGGTTCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTGCACACAAAGGGCAATCTCCGAAAGAAATTAGGTTCATGCA  400

seq1  AATGTCAGTAGTTTTACCTTTCCCTTCCATAACTACAATATAAATAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTAGTTTTACCTTTCCCTTCCATAACTACAATATAAATAGCAT  450

seq1  GTTGACATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACT  500

seq1  CAATTTTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTTCCCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTTCCCCTCCT  550

seq1  GACTCTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATGATATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCTCATCTAACAACTCCTCCGCCATCTCCAAGATGATATACCT  600

seq1  ACCTCCCCAACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCAACGCCCAGCCCTTCCTAATCCCTGGGGACTTAAGTCTCTCT  650

seq1  GGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAGGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCT  700

seq1  GCATATTTGATGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGATGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGA  750

seq1  GGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTTGAGAATGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATGTCTGAGAGATCTTGCTTGTCCAGGTTTGTTGAGAATGCTGG  800

seq1  TCTTTCTATGGGTCACCCTCCTCAGCTTCTTACAACTATTCCC-AATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTTCTATGGGTCACCCTCCTCAGCTTCTTACAACTATTCCCAAATTCA  850

seq1  TCCAGAGAGTCCCTGGGCTTCTGATCATTGTTGGATATAATATATTTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGTCCCTGGGCTTCTGATCATTGTTGGATATAATATATTTGTA  900

seq1  TTTGACAGCAG-AAAAGGAACATTT-CCTTCATAGAC-TATCGGCCAATA  946
      ||||||||||| ||||||||||||| ||||||||||| ||||||||||||
seq2  TTTGACAGCAGAAAAAGGAACATTTCCCTTCATAGACTTATCGGCCAATA  950

seq1  ACTTGAAGAACAGATGAAAAAAAGTCAGTATTTTTATGT--GTGTGCTCT  994
      |||||||||||||||||||||||||||||| ||||||||   ||||||||
seq2  ACTTGAAGAACAGATGAAAAAAAGTCAGTA-TTTTATGTTGTTGTGCTCT  999

seq1  TACTTGAAATCAAAAAAATATGTTCTGATTTCATCTTTGCTGATTATTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAATCAAAAAAATATGTTCTGATTTCATCTTTGCTGATTATTTA  1049

seq1  GTTAGTCTGTGTTTCTCACTAATTATTTGATTTGGTAGATG-GTTTC  1090
      | ||||||| |||||||||||  |||||||||||| ||||| |||||
seq2  G-TAGTCTGGGTTTCTCACTA--TATTTGATTTGG-AGATGAGTTTC  1092

seq1: chr7_7490200_7491043
seq2: B6Ng01-344N13.g_68_911 (reverse)

seq1  AAT-CCCCCCCTCCAAAAAAAACAAAACAAAACAAAACAAAAAACCAAAA  49
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATCCCCCCCCTCCAAAAAAAAC-AAACAAAACAAAACAAAAAACCAAAA  49

seq1  ACCAAAAAACAAAGGAAAGCCTAGACATGCTCTGAAATGATGGCAGGGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAACAAAGGAAAGCCTAGACATGCTCTGAAATGATGGCAGGGCA  99

seq1  GGGTCTTACAAGTAAATACATGAGTGTTCATATTTCTGACATCAACGTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTACAAGTAAATACATGAGTGTTCATATTTCTGACATCAACGTCT  149

seq1  GGTGCAGGATCCTTTGAGAGTCATCAAGCAGTGTCCATTCCTCCCAGTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGATCCTTTGAGAGTCATCAAGCAGTGTCCATTCCTCCCAGTAG  199

seq1  AAGTACACAGCCACATCCTCAAAGGATAAACAGTCCTGAATAATGGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAGCCACATCCTCAAAGGATAAACAGTCCTGAATAATGGAGAA  249

seq1  AGTTGAATTTATATGAATCCTCCTTGTCAGGGATTCCTGGTACCCTTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTATATGAATCCTCCTTGTCAGGGATTCCTGGTACCCTTAAG  299

seq1  TCATTCCCACTTAGCTTTCTACCTCAGAGTATACCAGGCTGTGAACCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCACTTAGCTTTCTACCTCAGAGTATACCAGGCTGTGAACCTAT  349

seq1  TCTATTGATAGCCAGTTTCATGTTCCCTCCGACTACTGTGCTCATCACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGATAGCCAGTTTCATGTTCCCTCCGACTACTGTGCTCATCACTC  399

seq1  AGCAACATGAGTTAAGTTGACATAGTGGCTTAATTACTTTTCTATTACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGAGTTAAGTTGACATAGTGGCTTAATTACTTTTCTATTACTG  449

seq1  TGAAGAGACACCATGACCAAGGCAACTTATGATAACAAGGAGTTTATTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGACACCATGACCAAGGCAACTTATGATAACAAGGAGTTTATTGG  499

seq1  GGCTTACACCTCAGAGGGTCAATCTGTAACCTCCATGTCAGGGAGGATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACACCTCAGAGGGTCAATCTGTAACCTCCATGTCAGGGAGGATGG  549

seq1  ATACAGGCACACACAGCACTGGAACAGTTGCTGAGAGCTTACATCCTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCACACACAGCACTGGAACAGTTGCTGAGAGCTTACATCCTGAT  599

seq1  CCATAGTACAGTACCAGGGAGAGAGAGTTAACTGGGAATGGAAAGAGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTACAGTACCAGGGAGAGAGAGTTAACTGGGAATGGAAAGAGCTT  649

seq1  TTGAGACATACAAGCCCACCCCCAGGGACACACCTCCTCCAACAAGGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATACAAGCCCACCCCCAGGGACACACCTCCTCCAACAAGGCTA  699

seq1  TACATCATTATTATCTCTAAAGTGTTCCACCAATAAGGAACAAGTATGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATTATTATCTCTAAAGTGTTCCACCAATAAGGAACAAGTATGCA  749

seq1  AGTCTATGACTTTCTGGAGGGTGAGTTCATTGAAACCATCACAGCTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGACTTTCTGGAGGGTGAGTTCATTGAAACCATCACAGCTGGAG  799

seq1  TCAATCCAAGCTAGAAGAATGTCCCTCCTTTCAATCTGAGAATTC  844
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAAGCTAGAAGAATGTCCCTCCTTTCAATCTGAGAATTC  844