BAC Information

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BAC

Clone NameB6Ng01-344P12
Chromosome7 (Build37)
Map Location 130,529,134 - 130,630,021
singlet/doubletdoublet
Overlap geneLcmt1, Aqp8, Zkscan2
Upstream genePrkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17
Downstream geneLOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P12.bB6Ng01-344P12.g
ACCGA127317GA127318
length1,071646
definitionB6Ng01-344P12.b B6Ng01-344P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,628,990 - 130,630,021)(130,529,134 - 130,529,779)
sequence
gaattcacaggattagctgggcaatggtggcacatgcctttaatcctgag
gcagaggctggtggagctatgtgagttcaaagccagcctggtgtacagca
tgaactccaggacagagctacacagagaaaccctgtctcaaaaataatat
atatatatcaaacccatagttacttggacatagctctcagtctcaaggaa
aactggtaaaaataagtaataagaattttcagtctattcttttggggttg
tagtccatttgtctgaactacttgggaaagacacttataggtagctaagt
cctttagttagtttccatagcagtggcagtatgggagactacatggactc
ttccaagtcaacccttttggaattggaattttggctaattatttaaaaat
tggtgtttgtgcaggttgaatctttgtacccagaagcagaacatctaatt
ttttcaagttattttaatgtgtttaaataaataactgtagatttttaaca
tagatttttctgctttttacaaagcttgtttctggatattccttatttcc
tgttgctatcatgaatagaacttttactcataattttttttatccttgag
aagtttgtaaatgtatacaatgaaatattatcatatacactcaccaatta
cctccaactccccgaaacaagtccccatcccaacttcatgtgttttttat
ctatttgtttgtttactaacccactaaatacaattagtgctgcccatatg
tgtatggatatgggaccatcccctgaagcataggtaatctaccagtagga
acttcctcaaaaaagaacaattctctctcttccaaaaactgtcaagtggt
agggacttgagaacacgcacacacacatgctctcacacacacctatgcta
caattttgactgactgtgtaggtcttcttctacaaatagccatccctgct
gtgagttcatgagtgcagtagccctgtcatgtccagaagaacagtgttcc
acaggtggctattccctgaataagacttgtattctattacactatagaat
gtgttgtaatagaaaagttcc

gaattccatactttatctacttgcaaacttgccttctgtttccgtccagg
atacttgttgacagaggagggcactgaagccttcaagtggaactgcattc
gtgttcctgtaagaaacttcacagtcctttcctggaggacatttgtctct
gtcctgtagaacacacttgtagctagaaaagatgatttcatagttgtagt
ctcccaataagagggagcagaaaatacttcttaggaggtgtgcttcagct
gggttgttcgtaggagggtccatgaaacagctgtgctgtggatcaaacgc
taacagccgaggcctggcagctctgttggcgaggcacactcagggcgtta
gaatgtttgtctagagaaggattgaaggggcaatagaaacccagtcactt
gtcagctagaagagagggggcttggtgtctttgggggtgacacaatgcct
gtgctacttagtgtttgtccgtttgacacaagctcaggccatctggggag
agggaacttcaaatgaggaaaagtctccgtgagagtgacttgcagacaag
tctgtggagcattttttggattaatgattaatgtgggagggccctggcca
ctgtgaccaagtgacagtacctcccggggggcggggggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130628990_130630021
seq2: B6Ng01-344P12.b_84_1120 (reverse)

seq1  GGAACTTTTCTATTAC-ACACATTCTATAGTGTAATAGAATACAAGTCTT  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAACTTTTCTATTACAACACATTCTATAGTGTAATAGAATACAAGTCTT  50

seq1  ATTCAGGGAATAGC--ACTGTGGAACACTG-TCTTCTGGACATGACA-GG  95
      ||||||||||||||   ||||||||||||| |||||||||||||||| ||
seq2  ATTCAGGGAATAGCCACCTGTGGAACACTGTTCTTCTGGACATGACAGGG  100

seq1  CTACTGCACTCATGAACTCACAGCAGGGATGGCTATTTGTAGAAGAAGAC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCACTCATGAACTCACAGCAGGGATGGCTATTTGTAGAAGAAGAC  150

seq1  CTACACAGTCAGTCAAAATTGTAGCATAGGTGTGTGTGAGAGCATGTGTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTCAGTCAAAATTGTAGCATAGGTGTGTGTGAGAGCATGTGTG  200

seq1  TGTGCGTGTTCTCAAGTCCCTACCACTTGACAGTTTTTGGAAGAGAGAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTTCTCAAGTCCCTACCACTTGACAGTTTTTGGAAGAGAGAGA  250

seq1  ATTGTTCTTTTTTGAGGAAGTTCCTACTGGTAGATTACCTATGCTTCAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTTTTTTGAGGAAGTTCCTACTGGTAGATTACCTATGCTTCAGG  300

seq1  GGATGGTCCCATATCCATACACATATGGGCAGCACTAATTGTATTTAGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCCCATATCCATACACATATGGGCAGCACTAATTGTATTTAGTG  350

seq1  GGTTAGTAAACAAACAAATAGATAAAAAACACATGAAGTTGGGATGGGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTAAACAAACAAATAGATAAAAAACACATGAAGTTGGGATGGGGA  400

seq1  CTTGTTTCGGGGAGTTGGAGGTAATTGGTGAGTGTATATGATAATATTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCGGGGAGTTGGAGGTAATTGGTGAGTGTATATGATAATATTTC  450

seq1  ATTGTATACATTTACAAACTTCTCAAGGATAAAAAAAATTATGAGTAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATACATTTACAAACTTCTCAAGGATAAAAAAAATTATGAGTAAAA  500

seq1  GTTCTATTCATGATAGCAACAGGAAATAAGGAATATCCAGAAACAAGCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTCATGATAGCAACAGGAAATAAGGAATATCCAGAAACAAGCTT  550

seq1  TGTAAAAAGCAGAAAAATCTATGTTAAAAATCTACAGTTATTTATTTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAGCAGAAAAATCTATGTTAAAAATCTACAGTTATTTATTTAAA  600

seq1  CACATTAAAATAACTTGAAAAAATTAGATGTTCTGCTTCTGGGTACAAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAATAACTTGAAAAAATTAGATGTTCTGCTTCTGGGTACAAAG  650

seq1  ATTCAACCTGCACAAACACCAATTTTTAAATAATTAGCCAAAATTCCAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCTGCACAAACACCAATTTTTAAATAATTAGCCAAAATTCCAAT  700

seq1  TCCAAAAGGGTTGACTTGGAAGAGTCCATGTAGTCTCCCATACTGCCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGGGTTGACTTGGAAGAGTCCATGTAGTCTCCCATACTGCCACT  750

seq1  GCTATGGAAACTAACTAAAGGACTTAGCTACCTATAAGTGTCTTTCCCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAAACTAACTAAAGGACTTAGCTACCTATAAGTGTCTTTCCCAA  800

seq1  GTAGTTCAGACAAATGGACTACAACCCCAAAAGAATAGACTGAAAATTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCAGACAAATGGACTACAACCCCAAAAGAATAGACTGAAAATTCT  850

seq1  TATTACTTATTTTTACCAGTTTTCCTTGAGACTGAGAGCTATGTCCAAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTATTTTTACCAGTTTTCCTTGAGACTGAGAGCTATGTCCAAGT  900

seq1  AACTATGGGTTTGATATATATATATTATTTTTGAGACAGGGTTTCTCTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGGTTTGATATATATATATTATTTTTGAGACAGGGTTTCTCTGT  950

seq1  GTAGCTCTGTCCTGGAGTTCATGCTGTACACCAGGCTGGCTTTGAACTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGTCCTGGAGTTCATGCTGTACACCAGGCTGGCTTTGAACTCA  1000

seq1  CATAGCTCCACCAGCCTCTGCCTCAGGATTAAAGGCA  1032
      |||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCCACCAGCCTCTGCCTCAGGATTAAAGGCA  1037


seq1: chr7_130529134_130529779
seq2: B6Ng01-344P12.g_68_713

seq1  GAATTCCATACTTTATCTACTTGCAAACTTGCCTTCTGTTTCCGTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTTTATCTACTTGCAAACTTGCCTTCTGTTTCCGTCCAGG  50

seq1  ATACTTGTTGACAGAGGAGGGCACTGAAGCCTTCAAGTGGAACTGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTTGACAGAGGAGGGCACTGAAGCCTTCAAGTGGAACTGCATTC  100

seq1  GTGTTCCTGTAAGAAACTTCACAGTCCTTTCCTGGAGGACATTTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTGTAAGAAACTTCACAGTCCTTTCCTGGAGGACATTTGTCTCT  150

seq1  GTCCTGTAGAACACACTTGTAGCTAGAAAAGATGATTTCATAGTTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAGAACACACTTGTAGCTAGAAAAGATGATTTCATAGTTGTAGT  200

seq1  CTCCCAATAAGAGGGAGCAGAAAATACTTCTTAGGAGGTGTGCTTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATAAGAGGGAGCAGAAAATACTTCTTAGGAGGTGTGCTTCAGCT  250

seq1  GGGTTGTTCGTAGGAGGGTCCATGAAACAGCTGTGCTGTGGATCAAACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTCGTAGGAGGGTCCATGAAACAGCTGTGCTGTGGATCAAACGC  300

seq1  TAACAGCCGAGGCCTGGCAGCTCTGTTGGCGAGGCACACTCAGGGCGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCGAGGCCTGGCAGCTCTGTTGGCGAGGCACACTCAGGGCGTTA  350

seq1  GAATGTTTGTCTAGAGAAGGATTGAAGGGGCAATAGAAACCCAGTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTGTCTAGAGAAGGATTGAAGGGGCAATAGAAACCCAGTCACTT  400

seq1  GTCAGCTAGAAGAGAGGGGGCTTGGTGTCTTTGGGGGTGACACAATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTAGAAGAGAGGGGGCTTGGTGTCTTTGGGGGTGACACAATGCCT  450

seq1  GTGCTACTTAGTGTTTGTCCGTTTGACACAAGCTCAGGCCATCTGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTTAGTGTTTGTCCGTTTGACACAAGCTCAGGCCATCTGGGGAG  500

seq1  AGGGAACTTCAAATGAGGAAAAGTCTCCGTGAGAGTGACTTGCAGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTTCAAATGAGGAAAAGTCTCCGTGAGAGTGACTTGCAGACAAG  550

seq1  TCTGTGGAGCATTTTTTGGATTAATGATTAATGTGGGAGGGCCCTGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAGCATTTTTTGGATTAATGATTAATGTGGGAGGGCCCTGGCCA  600

seq1  CTGTGACCAAGTGACAGTACCTCCCGGGGGGCGGGGGGTGGGGGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCAAGTGACAGTACCTCCCGGGGGGCGGGGGGTGGGGGTG  646


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