BAC Information

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BAC

Clone NameB6Ng01-345B18
Chromosome7 (Build37)
Map Location 139,547,625 - 139,727,565
singlet/doubletdoublet
Overlap geneLOC100043683
Upstream geneIkzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneOat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345B18.bB6Ng01-345B18.g
ACCGA127414GA127415
length1,1421,093
definitionB6Ng01-345B18.b B6Ng01-345B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,547,625 - 139,548,755)(139,726,487 - 139,727,565)
sequence
gaattctcggtccacccatcacactggctgggcttgggtgtccgaattgg
gactatgtctggaaagggatgagaaagcattccacgtccattcttggttg
gtaggccttggattgtcaaggactgtgaggattaaagccattagtaacac
tatcatttcattaaacattgcttgctccttgccatctgcaagatgtaagt
ttcagataactttcgggtttccatttgctcttggctgtgggcagatctgc
cttctcttggagtctcagtccctgaggcaatctatttaaagtgatagcct
gagttttgcaagcagacaaatggtgtgtccagtgtggaggtttaccgagc
agggtgtaaagaaaattcttcgttcggatgcagctgtctttggttagcac
ataccatccttgtagagaaatctctgggggctgtgaagtgagtggttttt
cgcttctggggttttgttctgaaacccagaaaggaataaatagcatcact
gtaaaaacatccctgcctggacgtttgatcttagcttggcagctgctgca
gagtgtgcccgccccctcaccccttgtgggcagtcagtacagggttgctc
gtaggattgaggactttgaactgaaggtgtacgttgggacaaagtccact
tgttggttgattagtaaaattctcaagacgagaaaacataaagctaagct
ggaggctcttctgagcccagagttcttttggtatgaaaaagtagctatga
aattatccatctcaactccagaagatgcccagagagttcaagtaatgtgc
ctaagggaacacagcaaaaacagttgtagtgctctttgtcttccctccat
cccttcccactctgcaggttgccctcccaactaaaagggatcctttgtag
aagtagactccctttttatcttggggaaaacaatggtcaggggattgcta
gaggtctccttaaatctctttatgcttagagaaacaggctcctataatgt
ccactgaagagagtaggaggagaaagggcgggggagcaaaggaactgcca
agtgtgtgttgcctccacttcagtccttgaaatgcggttgaacaggaatt
cctgtagggaaatcggtatccaaggtcgtgtgctcaagctca
gaattccttttttcttccaccaagtgtgtcctgggatcaaactcaggttg
tcgggcttggtggcaagtgcttttacttgctgagtcatatcaccagccct
agatagttatttctgtctagaaagaacctgagaaaactctgaagagctcc
ctggagacttgtgcccatctctcaaaaagtgacaagagagctgggtgtgg
tggcgcacgcctttaatcccagcactcgggaggcagaggcaggtggattt
ctgagtttgaggccagcctggtctacagagtgagttccaggacagctagg
gctacacagagaaaccctgtcttgaaaaaaaaaaaaaaagtaagtcacaa
gtgaatttgacccaaaaaaagacatgctgggtcaccatgggtgatttata
gataaagttcagaggggtcaagtgtgatggttaatactgtcaacttgaca
caatccagaatcctgtggatggaaacctctgggcataattgtgagggatt
ttataaatgaggttaattaagtaggaaaacccactaaaaaaagacttatt
tacatatataaatgctctgtctattgtgaggagcgggtgtgtgtggcggc
agtcccaaaggcgccagggactgcacctaaatcgtatgacttgcacctga
cttcctcacctgaatataagccacaaccatcatcagagctgcgcaggtgt
accaggatactggcaaatccattttggtggagatatgcccctgctgccct
gattagctgaagctgcgtacctggtgaggtgacgtggcctgctgtgagtg
gatgggaactgagagtatataagagtgagaggtccagggttcgggggaga
tataaacaagaagaaagatgaagactgaataaacttgctgttagaaggga
ctgggtggtcgttgtcgttcttgctgggtcgagaggcggaacgcgacagg
tctatgttcttaatatgacacactctctacgtcatgtattctgtgtagta
atggagagagttatttatattactctactgcattgactcaactcaaggtc
agagctgtagagacccagtttagccattcccaagctagtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139547625_139548755
seq2: B6Ng01-345B18.b_47_1188

seq1  GAATTCTCGGTCCACCCATCACACTGGCTGGGCTTGGGTGTCCGAATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGGTCCACCCATCACACTGGCTGGGCTTGGGTGTCCGAATTGG  50

seq1  GACTATGTCTGGAAAGGGATGAGAAAGCATTCCACGTCCATTCTTGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTCTGGAAAGGGATGAGAAAGCATTCCACGTCCATTCTTGGTTG  100

seq1  GTAGGCCTTGGATTGTCAAGGACTGTGAGGATTAAAGCCATTAGTAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTTGGATTGTCAAGGACTGTGAGGATTAAAGCCATTAGTAACAC  150

seq1  TATCATTTCATTAAACATTGCTTGCTCCTTGCCATCTGCAAGATGTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCATTAAACATTGCTTGCTCCTTGCCATCTGCAAGATGTAAGT  200

seq1  TTCAGATAACTTTCGGGTTTCCATTTGCTCTTGGCTGTGGGCAGATCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAACTTTCGGGTTTCCATTTGCTCTTGGCTGTGGGCAGATCTGC  250

seq1  CTTCTCTTGGAGTCTCAGTCCCTGAGGCAATCTATTTAAAGTGATAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTGGAGTCTCAGTCCCTGAGGCAATCTATTTAAAGTGATAGCCT  300

seq1  GAGTTTTGCAAGCAGACAAATGGTGTGTCCAGTGTGGAGGTTTACCGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGCAAGCAGACAAATGGTGTGTCCAGTGTGGAGGTTTACCGAGC  350

seq1  AGGGTGTAAAGAAAATTCTTCGTTCGGATGCAGCTGTCTTTGGTTAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTAAAGAAAATTCTTCGTTCGGATGCAGCTGTCTTTGGTTAGCAC  400

seq1  ATACCATCCTTGTAGAGAAATCTCTGGGGGCTGTGAAGTGAGTGGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATCCTTGTAGAGAAATCTCTGGGGGCTGTGAAGTGAGTGGTTTTT  450

seq1  CGCTTCTGGGGTTTTGTTCTGAAACCCAGAAAGGAATAAATAGCATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTGGGGTTTTGTTCTGAAACCCAGAAAGGAATAAATAGCATCACT  500

seq1  GTAAAAACATCCCTGCCTGGACGTTTGATCTTAGCTTGGCAGCTGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACATCCCTGCCTGGACGTTTGATCTTAGCTTGGCAGCTGCTGCA  550

seq1  GAGTGTGCCCGCCCCCTCACCCCTTGTGGGCAGTCAGTACAGGGTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCCCGCCCCCTCACCCCTTGTGGGCAGTCAGTACAGGGTTGCTC  600

seq1  GTAGGATTGAGGACTTTGAACTGAAGGTGTACGTTGGGACAAAGTCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTGAGGACTTTGAACTGAAGGTGTACGTTGGGACAAAGTCCACT  650

seq1  TGTTGGTTGATTAGTAAAATTCTCAAGACGAGAAAACATAAAGCTAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTGATTAGTAAAATTCTCAAGACGAGAAAACATAAAGCTAAGCT  700

seq1  GGAGGCTCTTCTGAGCCCAGAGTTCTTTTGGTATGAAAAAGTAGCTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCTTCTGAGCCCAGAGTTCTTTTGGTATGAAAAAGTAGCTATGA  750

seq1  AATTATCCATCTCAACTCCAGAAGATGCCCAGAGAGTTCAAGTAATGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCATCTCAACTCCAGAAGATGCCCAGAGAGTTCAAGTAATGTGC  800

seq1  CTAAGGGAACACAGCAAAAACAGTTGTAGTGCTCTTTGTCTTCCCTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAACACAGCAAAAACAGTTGTAGTGCTCTTTGTCTTCCCTCCAT  850

seq1  CCC-TCCCACTCTGCAGGTTGCCCTCCCAACTAAAAGGGATCCTTTGTAG  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCACTCTGCAGGTTGCCCTCCCAACTAAAAGGGATCCTTTGTAG  900

seq1  AAGTAGACTCC--TTTTATCTTGGGG-AAACAATGGTCAGGGGGATTGCT  946
      |||||||||||  ||||||||||||| |||||||||||| ||||||||||
seq2  AAGTAGACTCCCTTTTTATCTTGGGGAAAACAATGGTCA-GGGGATTGCT  949

seq1  AGAGGTCTCCTT-AATCTCTTTATGC-TAGAG-AACAGGCTCCTATTATG  993
      |||||||||||| ||||||||||||| ||||| ||||||||||||| |||
seq2  AGAGGTCTCCTTAAATCTCTTTATGCTTAGAGAAACAGGCTCCTATAATG  999

seq1  -CCACTGAAGAAGAGGAGGAAGAGAAAGGGCGGGGGAGCAAAGGAACTGC  1042
       ||||||||| |||| |||| |||||||||||||||||||||||||||||
seq2  TCCACTGAAG-AGAGTAGGAGGAGAAAGGGCGGGGGAGCAAAGGAACTGC  1048

seq1  CAAGTGTGTGGTGCCT-CAC-TCAGTCC-TGAGATGCGGTTGGACAGGA-  1088
      |||||||||| ||||| ||| ||||||| ||| ||||||||| |||||| 
seq2  CAAGTGTGTGTTGCCTCCACTTCAGTCCTTGAAATGCGGTTGAACAGGAA  1098

seq1  -TCTTGTAGGG-AATC-GTATCCAA-GCCGTGTGGTCTCAAAGCTCA  1131
       || ||||||| |||| |||||||| | |||||| ||   |||||||
seq2  TTCCTGTAGGGAAATCGGTATCCAAGGTCGTGTGCTC---AAGCTCA  1142

seq1: chr7_139726487_139727565
seq2: B6Ng01-345B18.g_64_1156 (reverse)

seq1  TCACACCTGGCTTGGGA--TGCT-AACT-GGTCTCTACAGCTCTGCCCTT  46
      ||||| || ||||||||   ||| |||| |||||||||||||||| ||||
seq2  TCACA-CTAGCTTGGGAATGGCTAAACTGGGTCTCTACAGCTCTGACCTT  49

seq1  G-GGTGAGTCATTGCAGTAGAGT-ATATAAATTACTCTTCTCATTACTAC  94
      | | ||||||| ||||||||||| |||||||| |||||   |||||||||
seq2  GAGTTGAGTCAATGCAGTAGAGTAATATAAATAACTCTCTCCATTACTAC  99

seq1  AACAGAATACATGACGTAGAGAGTGTGTCATA-TAAG-ACATAGA-CTGT  141
       ||||||||||||||||||||||||||||||| |||| ||||||| ||||
seq2  -ACAGAATACATGACGTAGAGAGTGTGTCATATTAAGAACATAGACCTGT  148

seq1  CGCG-TCCG-CTCTCGA-CCAGCAAGAACGAC-ACGACCA-CCAGT-CCT  185
      |||| |||| ||||||| |||||||||||||| ||||||| ||||| |||
seq2  CGCGTTCCGCCTCTCGACCCAGCAAGAACGACAACGACCACCCAGTCCCT  198

seq1  TCTAACAGC-AGTTTATTCAGTCTTCATCTTTCTTCTTGTTTATATCTCC  234
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAGCAAGTTTATTCAGTCTTCATCTTTCTTCTTGTTTATATCTCC  248

seq1  CCCGAACCCTGGGCCTCTCACTCTTATATACTCTCAGTTCCCATCCACTC  284
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCGAACCCTGGACCTCTCACTCTTATATACTCTCAGTTCCCATCCACTC  298

seq1  ACAGCAGGCCACGTCACCTCACCAGGTACGCAGCTTCAGCTAATCAGGGC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGCCACGTCACCTCACCAGGTACGCAGCTTCAGCTAATCAGGGC  348

seq1  AGCAGGGGCATATCTCCACCAAAATGGATTTGCCAGTATCCTGGTACACC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCATATCTCCACCAAAATGGATTTGCCAGTATCCTGGTACACC  398

seq1  TGCGCAGCTCTGATGATGGTTGTGGCTTATATTCAGGTGAGGAAGTCAGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGCTCTGATGATGGTTGTGGCTTATATTCAGGTGAGGAAGTCAGG  448

seq1  TGCAAGTCATACGATTTAGGTGCAGTCCCTGGCGCCTTTGGGACTGCCGC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCATACGATTTAGGTGCAGTCCCTGGCGCCTTTGGGACTGCCGC  498

seq1  CACACACACCCGCTCCTCACAATAGACAGAGCATTTATATATGTAAATAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCGCTCCTCACAATAGACAGAGCATTTATATATGTAAATAA  548

seq1  GTCTTTTTTTAGTGGGTTTTCCTACTTAATTAACCTCATTTATAAAATCC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTTAGTGGGTTTTCCTACTTAATTAACCTCATTTATAAAATCC  598

seq1  CTCACAATTATGCCCAGAGGTTTCCATCCACAGGATTCTGGATTGTGTCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATTATGCCCAGAGGTTTCCATCCACAGGATTCTGGATTGTGTCA  648

seq1  AGTTGACAGTATTAACCATCACACTTGACCCCTCTGAACTTTATCTATAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAGTATTAACCATCACACTTGACCCCTCTGAACTTTATCTATAA  698

seq1  ATCACCCATGGTGACCCAGCATGTCTTTTTTTGGGTCAAATTCACTTGTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCATGGTGACCCAGCATGTCTTTTTTTGGGTCAAATTCACTTGTG  748

seq1  ACTTACTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTAG  798

seq1  CTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATC  848

seq1  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACA  898

seq1  CCCAGCTCTCTTGTCACTTTTTGAGAGATGGGCACAAGTCTCCAGGGAGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCTCTTGTCACTTTTTGAGAGATGGGCACAAGTCTCCAGGGAGC  948

seq1  TCTTCAGAGTTTTCTCAGGTTCTTTCTAGACAGAAATAACTATCTAGGGC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGTTTTCTCAGGTTCTTTCTAGACAGAAATAACTATCTAGGGC  998

seq1  TGGTGATATGACTCAGCAAGTAAAAGCACTTGCCACCAAGCCCGACAACC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATATGACTCAGCAAGTAAAAGCACTTGCCACCAAGCCCGACAACC  1048

seq1  TGAGTTTGATCCCAGGACACACTTGGTGGAAGAAAAAAGGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGATCCCAGGACACACTTGGTGGAAGAAAAAAGGAATTC  1093