BAC Information

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BAC

Clone NameB6Ng01-345C10
Chromosome7 (Build37)15 (Build37)
Map Location 93,534,715 - 93,535,82285,875,969 - 85,876,388
singlet/doubletsingletsinglet
Overlap geneOlfr304
Upstream geneLOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305
Downstream geneOlfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345C10.bB6Ng01-345C10.g
ACCGA127442GA127443
length1,108648
definitionB6Ng01-345C10.b B6Ng01-345C10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,534,715 - 93,535,822)(85,875,969 - 85,876,388)
sequence
gaattccagtagcccaggaaacacccaccatcagcacacagttaccacta
ctcatgattgcctcataacacagaggagagcaaatggcaacatagcggtc
ataagacattgcagtcagtacaaatatctcacctgctgagaacgaagtca
ttaaaagtatctgaaaggcacaacccagaatcgaaatgtaattgttgtga
gttaggttattgatgatgaactttgggattgggatggacacaaggaagac
atccaacagggacaaattctttaggaaaaagtacatgggtgtttggagtt
tcagatccagagtgatgaccgtgatgatgagcaggttactcattatgact
gctaggtacattaccagaaagaacagcccacatacagtctgtagttcagg
agcagctgagaatcccataaggatgaaccctgttactctagtgtcattgg
gcattctcgttttttcccatggtctgtcaggtgggagaattgaaaaaaag
aaaaaaaaactgatatagttctaagtagttacactgatgtgcataaatgc
tctctgggaatgagcccaggaaactacataggtacttctacattgttaaa
gcccttacttctttctgcaaggtgttactttttttgatacattagttgta
ccaatttatcatttatgacaatttattgtgctatgtattgttacaaatta
ttagaaaatcataaaataaggctgctatgaacatagtggagcatgtgtcc
ttcttaccagttggggcatcttctggatatatgcccaggagaggtattgc
tggatcctccggtagtactatgtccagttttctgaggaaccgccagactg
atttccagagtggttgtacaagcctgcactcccaccaacaatggaggagt
gttcctctttctccacatccacgccagcatctgctgtcacctgaattttt
gatcttagccattctgactggtgtgaggtggaatctcaggttgttttgat
ttgcatttccctgatgattaaggatgtggaacatttttttcaggtgcttc
tctgccattcgggtatctcagttgagaattcttttgttcagttctgagcc
ccattttt
gaattcagaggtagatttgctctctctctctctctctctctctctctctc
tctctctctctctgtgtgtgtgcgcgtgcacacacacacactgtctctct
ctctcagtgtctctctgtcattctttctctctctcttctccctcaaaacc
ctctcctatctctcttatagatagagtgcgtgggtacacactctctttca
tacattctctctctctttctatctgtctgtctgacactctgtgtgtgtgt
gtgtgtgtggatatatatattctttatttgtttttctagtgttattctct
atatgtgtgtgcacaaatgaaacacacatctctatctacatatatatata
tctgtgtgtaggtgtgttgcctcatgtacctggcatcccctatgtggggg
cataaactcttcacataaccatggggggagacagaatttctgagcaggag
aattaagtccgcatctcacaaaagacataagacacacgcgcgtgagagag
agagatgaggacatacacatgagtacacacattctcacgatatctggaag
agtaaagaaagacatattctttatctatacagagagagataaagtatcct
aggctcgtgtgtgtgctgcagtgtggagagctgcatgtgtgtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_93534715_93535822
seq2: B6Ng01-345C10.b_44_1151

seq1  GAATTCCAGTAGCCCAGGAAACACCCACCATCAGCACACAGTTACCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGCCCAGGAAACACCCACCATCAGCACACAGTTACCACTA  50

seq1  CTCATGATTGCCTCATAACACAGAGGAGAGCAAATGGCAACATAGCGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATTGCCTCATAACACAGAGGAGAGCAAATGGCAACATAGCGGTC  100

seq1  ATAAGACATTGCAGTCAGTACAAATATCTCACCTGCTGAGAACGAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATTGCAGTCAGTACAAATATCTCACCTGCTGAGAACGAAGTCA  150

seq1  TTAAAAGTATCTGAAAGGCACAACCCAGAATCGAAATGTAATTGTTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTATCTGAAAGGCACAACCCAGAATCGAAATGTAATTGTTGTGA  200

seq1  GTTAGGTTATTGATGATGAACTTTGGGATTGGGATGGACACAAGGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTATTGATGATGAACTTTGGGATTGGGATGGACACAAGGAAGAC  250

seq1  ATCCAACAGGGACAAATTCTTTAGGAAAAAGTACATGGGTGTTTGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAGGGACAAATTCTTTAGGAAAAAGTACATGGGTGTTTGGAGTT  300

seq1  TCAGATCCAGAGTGATGACCGTGATGATGAGCAGGTTACTCATTATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCAGAGTGATGACCGTGATGATGAGCAGGTTACTCATTATGACT  350

seq1  GCTAGGTACATTACCAGAAAGAACAGCCCACATACAGTCTGTAGTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTACATTACCAGAAAGAACAGCCCACATACAGTCTGTAGTTCAGG  400

seq1  AGCAGCTGAGAATCCCATAAGGATGAACCCTGTTACTCTAGTGTCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGAGAATCCCATAAGGATGAACCCTGTTACTCTAGTGTCATTGG  450

seq1  GCATTCTCGTTTTTTCCCATGGTCTGTCAGGTGGGAGAATTGAAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCGTTTTTTCCCATGGTCTGTCAGGTGGGAGAATTGAAAAAAAG  500

seq1  AAAAAAAAACTGATATAGTTCTAAGTAGTTACACTGATGTGCATAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACTGATATAGTTCTAAGTAGTTACACTGATGTGCATAAATGC  550

seq1  TCTCTGGGAATGAGCCCAGGAAACTACATAGGTACTTCTACATTGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGAATGAGCCCAGGAAACTACATAGGTACTTCTACATTGTTAAA  600

seq1  GCCCTTACTTCTTTCTGCAAGGTGTTACTTTTTTTGATACATTAGTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTACTTCTTTCTGCAAGGTGTTACTTTTTTTGATACATTAGTTGTA  650

seq1  CCAATTTATCATTTATGACAATTTATTGTGCTATGTATTGTTACAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTATCATTTATGACAATTTATTGTGCTATGTATTGTTACAAATTA  700

seq1  TTAGAAAATCATAAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATCATAAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCC  750

seq1  TTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGC  800

seq1  TGGATCCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTCCGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAGACTG  850

seq1  ATTTCCAGAGTGGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAGTGGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGT  900

seq1  GTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTT  950

seq1  GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCA-GGTTGTTTTGA  999

seq1  TTTGCATTTCCCTGATGATTAAGGATGTTGAACA-TTTTTTCAAGTGCTT  1049
      |||||||||||||||||||||||||||| ||||| |||||||| ||||||
seq2  TTTGCATTTCCCTGATGATTAAGGATGTGGAACATTTTTTTCAGGTGCTT  1049

seq1  CTCTGCCATTC-GGTATTCCTCAGGTGAGAATTC-TTTGTTCAGTTCTGA  1097
      ||||||||||| |||||  ||||| ||||||||| |||||||||||||||
seq2  CTCTGCCATTCGGGTAT--CTCAGTTGAGAATTCTTTTGTTCAGTTCTGA  1097

seq1  GCCCCATTTTT  1108
      |||||||||||
seq2  GCCCCATTTTT  1108

seq1: chr15_85875969_85876388
seq2: B6Ng01-345C10.g_82_714 (reverse)

seq1  GCACACACACACACACA------CACACACACACACACACAC--------  36
      |||||||||||||  ||      |||||     |||||||||        
seq2  GCACACACACACATGCAGCTCTCCACACTGCAGCACACACACGAGCCTAG  50

seq1  -ACAC---------------ACAGAGCAAACACA----------TACACA  60
       | ||               | |||  ||  | |          ||| | 
seq2  GATACTTTATCTCTCTCTGTATAGATAAAGAATATGTCTTTCTTTACTCT  100

seq1  CACACACA---------------CACACAT-----------------ACA  78
        || | |                || |||                  | 
seq2  TCCAGATATCGTGAGAATGTGTGTACTCATGTGTATGTCCTCATCTCTCT  150

seq1  CACACACACAC-----------------AGAGAGA----GA---AA----  100
      | | ||| | |                  | ||||    ||   ||    
seq2  CTCTCACGCGCGTGTGTCTTATGTCTTTTGTGAGATGCGGACTTAATTCT  200

seq1  ---GC----AAA-----------CACAT----------AGAG-----ACA  117
         ||    |||           | |||          ||||      | 
seq2  CCTGCTCAGAAATTCTGTCTCCCCCCATGGTTATGTGAAGAGTTTATGCC  250

seq1  CACACAGAGAG-----CAAACACATAGACACACACAGAGAGAGAGAGAGA  162
      | |||| || |     ||   |||| ||  || ||| |   | | | |||
seq2  CCCACATAGGGGATGCCAGGTACAT-GAGGCA-ACACACCTACACACAGA  298

seq1  GAGAGAGAGAGGGAGAGAGAGA-GAGAGGGAGA---GAGAAAGCAAACAT  208
       | | | | | | ||| ||||| | | |    |   | | |  || ||||
seq2  TATATATATATGTAGATAGAGATGTGTGTTTCATTTGTGCA--CACACAT  346

seq1  ATAGACACACACAC-------ACAGAGCAAACACAAAGACAAACACATAG  251
      ||||| |   ||||       ||| |  ||  | | | | |  |||| | 
seq2  ATAGAGAATAACACTAGAAAAACAAATAAAGAATATATATATCCACACAC  396

seq1  ACACACACACACATA----CACACATACACAGAGAGAGAGAGAGAGCAT-  296
      ||||||||||||| |    || ||| ||| | ||| |||||||||| || 
seq2  ACACACACACACAGAGTGTCAGACAGACAGATAGAAAGAGAGAGAGAATG  446

seq1  ----ACACATAG---ATACACACACACAC--------ACAGAGCAAACAC  331
          | | | ||    ||| ||| ||| |        | ||||  |  | 
seq2  TATGAAAGAGAGTGTGTACCCACGCACTCTATCTATAAGAGAGATAGGAG  496

seq1  ATAGAT----------ACACACAGAGCAA-----ACACATAGACACACAG  366
      |  | |          | | | |||| ||     ||| | ||||||  ||
seq2  AGGGTTTTGAGGGAGAAGAGAGAGAGAAAGAATGACAGAGAGACACTGAG  546

seq1  AGAGAG---------------------------------AGAGAGAGAGA  383
      ||||||                                 |||||||||||
seq2  AGAGAGAGACAGTGTGTGTGTGTGCACGCGCACACACACAGAGAGAGAGA  596

seq1  GAGAGAGAAAGAGAGAGAGGGAGGGAGAGAGAGCAAA  420
      |||||||| |||||||||| ||| |||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAA  633