BAC Information

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BAC

Clone NameB6Ng01-345F18
Chromosome7 (Build37)7 (Build37)
Map Location 49,729,154 - 49,730,31350,502,826 - 50,503,697
singlet/doubletsingletsinglet
Overlap geneBC063263
Upstream geneEG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503
Downstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345F18.bB6Ng01-345F18.g
ACCGA127580GA127581
length1,1361,013
definitionB6Ng01-345F18.b B6Ng01-345F18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,729,154 - 49,730,313)(50,502,826 - 50,503,697)
sequence
gaattcactttgtggatcaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcatgtgccaccaccgcctggca
tagtctattttcaaagaaattgcttagtgaatatattagttagggtttct
tttgctgtggagagacatcataactacagtaactcctataaagaaaaata
ttttattttggctgacttgcagatgcagagtttttgcaaattgtcttcat
ggtgggaaacatagtggcatgcaggtagacatggtgctccagagatagct
gagatttctacctttggatcagcaggcaccaggaagaaagaatgacagtg
ggtttcacttgagcatctgaaacctcaaggcccaatccaatgacatactt
cttccaacaaaaccacacctactccaacaagaccacaccatctaatgtca
ctccctatatgtctgtgtatgctattttcagtcaaaccaccagagtgaat
ataagatgcattttggggtgtcttaaggtttccattgctgtgaaaagata
acatgaccaaggcaactcttaaaagaacaatatttaatcaaagctggctt
acaggttcagagactcagagcataatcaagagagaaagtacagcagggtc
caggcaggtacggcacaggaggagctgagagttctacattttgttcagga
ggcaaacagtagaagactggctcccagatgactagaaagagggtctcaaa
tcctaccccaacagagacacacttcctccagcaaggccacacctattcaa
acaaggctacacctcctagttgtgtactccctcagccaagcatattcaaa
ccaccacactggaaatttttttttcaattcaaaccagtatagggatacct
gatgtgactcccaatattgaagagttgaacagtgagtgttaagacttcca
tccattcttcataaaacaaacaaaccaaaacaaaacatacttcttgggtg
acagtgtatcagtataccgtgctttttgtctcatgctaaattttatatgt
gtctaacttacagctgtgtatgacttcaacattcttggcatttgtacggt
gtccagattgactcagatgatctatagacttgagaa
gaattctgtgtttagctttgcaccccgtttgtaattgcattatttgtgtt
gttggtgtccaacttcttgaatttttggtaaattttggatattagctctc
tgtcaaatattgtgttggtaaagactctttctcaggctgtagggcgccat
tttgttacattgacagttttctttccttcctgaagctctgcagtttcatg
aggccttattcatggattgttgatcttagagcctgaaccattggtattct
gttcaagaaactgtctcctgtaccaatgagttcaagggcatttcccactc
tatattctatgaaatttaatgtatatccatttttgtgttgaggtccttga
tccaactggacttgaatttcgtgtacagttataaaaatgtatctattttc
attcttctatctgtagatatccagtgataccagcaccattctttgaagat
actttactttttccactatatagttttggtttctttgtcaatccagtgtc
catgagtgtgtgggtttatttctggggtttctatttgattcccttgatta
aagtgtgtgcttctgtacaaatacaatgcagttggtttattttttttata
atcactattgctatgtagtacagcttgaggtcaggcatggtgttctcagg
ttttgagggctcctatgttccaccttgctggctgcagaagacaattttct
tttctttttaaatttttttaaagatttatttattattacaactaggtaca
ctgtagctgtcttcataaacaccagaaaagggtgtcagatctcattacag
gtggttatgtgccaccatgtggttgttgggatttgaactcataacgtttg
gaagagcagtcagtgcttgtaaccactgagaaatctcaccagccaatata
taaacttttcttttttttttaaagtttttttttttaggatttatttatta
ttataatttaagtacacttgtagctattcttttagacagaaatcagaaag
ggtgtcaatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49729154_49730313
seq2: B6Ng01-345F18.b_45_1180

seq1  GAATTCACTTTGTGGATCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGATCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCCTGGCA  100

seq1  TAGTCTATTTTCAAAGAAATTGCTTAGTGAATATATTAGTTAGGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATTTTCAAAGAAATTGCTTAGTGAATATATTAGTTAGGGTTTCT  150

seq1  TTTGCTGTGGAGAGACATCATAACTACAGTAACTCCTATAAAGAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGGAGAGACATCATAACTACAGTAACTCCTATAAAGAAAAATA  200

seq1  TTTTATTTTGGCTGACTTGCAGATGCAGAGTTTTTGCAAATTGTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGGCTGACTTGCAGATGCAGAGTTTTTGCAAATTGTCTTCAT  250

seq1  GGTGGGAAACATAGTGGCATGCAGGTAGACATGGTGCTCCAGAGATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAAACATAGTGGCATGCAGGTAGACATGGTGCTCCAGAGATAGCT  300

seq1  GAGATTTCTACCTTTGGATCAGCAGGCACCAGGAAGAAAGAATGACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTACCTTTGGATCAGCAGGCACCAGGAAGAAAGAATGACAGTG  350

seq1  GGTTTCACTTGAGCATCTGAAACCTCAAGGCCCAATCCAATGACATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACTTGAGCATCTGAAACCTCAAGGCCCAATCCAATGACATACTT  400

seq1  CTTCCAACAAAACCACACCTACTCCAACAAGACCACACCATCTAATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACAAAACCACACCTACTCCAACAAGACCACACCATCTAATGTCA  450

seq1  CTCCCTATATGTCTGTGTATGCTATTTTCAGTCAAACCACCAGAGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATATGTCTGTGTATGCTATTTTCAGTCAAACCACCAGAGTGAAT  500

seq1  ATAAGATGCATTTTGGGGTGTCTTAAGGTTTCCATTGCTGTGAAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGCATTTTGGGGTGTCTTAAGGTTTCCATTGCTGTGAAAAGATA  550

seq1  ACATGACCAAGGCAACTCTTAAAAGAACAATATTTAATCAAAGCTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCAAGGCAACTCTTAAAAGAACAATATTTAATCAAAGCTGGCTT  600

seq1  ACAGGTTCAGAGACTCAGAGCATAATCAAGAGAGAAAGTACAGCAGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGACTCAGAGCATAATCAAGAGAGAAAGTACAGCAGGGTC  650

seq1  CAGGCAGGTACGGCACAGGAGGAGCTGAGAGTTCTACATTTTGTTCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTACGGCACAGGAGGAGCTGAGAGTTCTACATTTTGTTCAGGA  700

seq1  GGCAAACAGTAGAAGACTGGCTCCCAGATGACTAGAAAGAGGGTCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAGTAGAAGACTGGCTCCCAGATGACTAGAAAGAGGGTCTCAAA  750

seq1  TCCTACCCCAACAGAGACACACTTCCTCCAGCAAGGCCACACCTATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCAACAGAGACACACTTCCTCCAGCAAGGCCACACCTATTCAA  800

seq1  ACAAGGCTACACCTCCTAGTTGTGTACTCCCTCAGCCAAGCATATTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTACACCTCCTAGTTGTGTACTCCCTCAGCCAAGCATATTCAAA  850

seq1  CCACCACACTGGAAATTTTTTTTCAAATTCAAACCAGTATAGGGATACCT  900
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CCACCACACTGGAAATTTTTTTTTCAATTCAAACCAGTATAGGGATACCT  900

seq1  GATGTGACT-CCAATATTGAAGAGTTGAACAGTGAGTGGTTAAAGACTTC  949
      ||||||||| ||||||||||||||||||||||||||||  | ||||||||
seq2  GATGTGACTCCCAATATTGAAGAGTTGAACAGTGAGTG--TTAAGACTTC  948

seq1  CATCCATTCTTCATAAAAACAAAACAAAACCAAAACAAAACATACTTCTT  999
      |||||||||||||| ||||||||   ||||||||||||||||||||||||
seq2  CATCCATTCTTCAT-AAAACAAA--CAAACCAAAACAAAACATACTTCTT  995

seq1  GGGTGAACAGTGTATCAGTAATTACCCTTGCTTTTGTCTCATGCTTAAAT  1049
      ||||| ||||||||||||||  |||| |   ||||||||||||| |||||
seq2  GGGTG-ACAGTGTATCAGTA--TACCGTGCTTTTTGTCTCATGC-TAAAT  1041

seq1  TTTATAATGTGTTCTAAATTTACAGCCTGTGGTAATGGACTTCAAACATT  1099
      ||||| ||||| ||| || |||||| |||| |||   |||||| ||||||
seq2  TTTAT-ATGTG-TCT-AACTTACAG-CTGT-GTA--TGACTTC-AACATT  1083

seq1  CTTTGCATTTGTAACGTTTGTTTCCAGTATGGATTCCAGGATGATCTATA  1149
      ||| |||||||| |||   || ||||| || || ||   |||||||||| 
seq2  CTTGGCATTTGT-ACG---GTGTCCAG-ATTGACTC--AGATGATCTAT-  1125

seq1  AGATTTGAGAA  1160
      ||| |||||||
seq2  AGACTTGAGAA  1136

seq1: chr7_50502826_50503697
seq2: B6Ng01-345F18.g_211_1079

seq1  CGCCATTTTGTTACATTGACAGTTTCCTTTCCTTCCTGAAGCTTTGCAGT  50
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  CGCCATTTTGTTACATTGACAGTTTTCTTTCCTTCCTGAAGCTCTGCAGT  50

seq1  TCCACGAGGCCTCATTCATTGATTGTTGATCTTAGAGCCTGAACCATTGG  100
      | || ||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTCATGAGGCCTTATTCATGGATTGTTGATCTTAGAGCCTGAACCATTGG  100

seq1  TATTCTGTTCAGGAAACTGTCTCCTGTACCAATGAGTTCAAGGGTATTTA  150
      ||||||||||| |||||||||||||||||||||||||||||||| |||| 
seq2  TATTCTGTTCAAGAAACTGTCTCCTGTACCAATGAGTTCAAGGGCATTTC  150

seq1  CCACTTTACATTCTATGAAATTTAATGTATATCCATTTTTGTGTTGAGGT  200
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTATATTCTATGAAATTTAATGTATATCCATTTTTGTGTTGAGGT  200

seq1  CCTTGATCCACCTGGATTTGAGTTTTGTGCATAGTTATAAAAATGGATCT  250
      |||||||||| ||||| |||| ||| ||| | ||||||||||||| ||||
seq2  CCTTGATCCAACTGGACTTGAATTTCGTGTACAGTTATAAAAATGTATCT  250

seq1  ATTTTCATTCTTCTATATGTAGATATCCAGTGATACCAGCACCATTCTTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTTCATTCTTCTATCTGTAGATATCCAGTGATACCAGCACCATTCTTT  300

seq1  GATGATACTTTATTTTTTCCACTATATAGTTTTGGTTTCTTTGTCAAAAT  350
      || ||||||||| ||||||||||||||||||||||||||||||||  |||
seq2  GAAGATACTTTACTTTTTCCACTATATAGTTTTGGTTTCTTTGTC--AAT  348

seq1  CCAGTGTCCGTGAGTGTGTGGGTTTATTTCTGGGGTTTCTATTTGATTCC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCCATGAGTGTGTGGGTTTATTTCTGGGGTTTCTATTTGATTCC  398

seq1  CTTGATCAAAGTGTGTGCTTCTGTACAAATACAATGCAGTTGGTTTATTT  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTAAAGTGTGTGCTTCTGTACAAATACAATGCAGTTGGTTTATTT  448

seq1  TTTTTATAATCACTATTGCTATGTAGTACTGCTTGAGGTCAGGCATGGTG  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTATAATCACTATTGCTATGTAGTACAGCTTGAGGTCAGGCATGGTG  498

seq1  TTCTCAGGTTTTGAGGGCTCCCATGCTCCACCTTGTTGGCTGCAGAAGAC  550
      ||||||||||||||||||||| ||| ||||||||| ||||||||||||||
seq2  TTCTCAGGTTTTGAGGGCTCCTATGTTCCACCTTGCTGGCTGCAGAAGAC  548

seq1  AATTTTCTTTTCTTTTTTTTCTTTAAAATTTTTTAAAAAGATTTATTTAT  600
      |||||||||||||||||        |||||||||  ||||||||||||||
seq2  AATTTTCTTTTCTTTTT--------AAATTTTTT-TAAAGATTTATTTAT  589

seq1  TATTATAAATAGGTACACTGTAGCTGTCTTCATACACACCAGAAGAGGGT  650
      ||||| || ||||||||||||||||||||||||| ||||||||| |||||
seq2  TATTACAACTAGGTACACTGTAGCTGTCTTCATAAACACCAGAAAAGGGT  639

seq1  GTCAGATCTCATTACAGGTTGTTATGAGCCACCATGTGGATGCTGGGATC  700
      ||||||||||||||||||| |||||| |||||||||||| || |||||| 
seq2  GTCAGATCTCATTACAGGTGGTTATGTGCCACCATGTGGTTGTTGGGATT  689

seq1  TGAACTCATTAGGTTTGGTAGAGCAGTGAATGCTCTTAACCACTGAGGAC  750
      ||||||||| | |||||| |||||||| | ||||  ||||||||||| | 
seq2  TGAACTCATAACGTTTGGAAGAGCAGTCAGTGCTTGTAACCACTGAGAAA  739

seq1  TCTCACCAGCCCATATATAA--CTTTCTTTTTTTTTTTAAG--TTTTTTT  796
      ||||||||||| ||||||||   |||||||||||||| |||  |||||||
seq2  TCTCACCAGCCAATATATAAACTTTTCTTTTTTTTTTAAAGTTTTTTTTT  789

seq1  TTAGG-TTTATTTATTATTATAA-TTAAGTACA-ATGTAGCTAT--CTTC  841
      ||||| ||||||||||||||||| |||||||||  |||||||||   || 
seq2  TTAGGATTTATTTATTATTATAATTTAAGTACACTTGTAGCTATTCTTTT  839

seq1  AGACAG-AACCAGAAGAGGGTGTCAGATCCCA  872
      |||||| || ||||| ||||||||| ||||||
seq2  AGACAGAAATCAGAA-AGGGTGTCA-ATCCCA  869