BAC Information

Click to search

BAC

Clone NameB6Ng01-345M23
Chromosome7 (Build37)
Map Location 147,890,105 - 147,891,254
singlet/doubletsinglet
Overlap geneOlfr541
Upstream geneEG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45
Downstream geneGA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M23.bB6Ng01-345M23.g
ACCGA127887GA127888
length1,1601,143
definitionB6Ng01-345M23.b B6Ng01-345M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgatttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
attcctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttt
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattgataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
ttgtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gatttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgatgttttcaaagaaccaactcctcgtttggttagttctttga
atagttcttgtttccacttggttgatttcacccctgagtttgattatttc
ctgccatctactcctcttgggtgaatttgcttccttttttttctagagct
tttagatgtgtgtcaagctgctagtatgtgctctctcccgtttcttcttg
aggcactcagagctatgagtttccctctagaatgctttcattgtgtccca
tagtttgggtatgttgtggctcaatttcgttaaactcctaagtcttaagt
cttcttatctcttggacaggatcatgagagaggtgtggtcagttccacgt
gaatgtcgctccatattagtgtatatgaagatcagctctaggccatgggt
gactagacat
gaattctgttgttttggaaattacagtgagtggaattgctcagtacatgc
atcaaagaaaggttttctgaagcagcgatgggtacactttgctccgtgaa
gctgctctcaggaaagcatgtctaggaacagcccagtccaggaggatatt
ctacacatctcctcttaatgtgagaaagagggtaagattctgcccagggc
aagcttgacatccttgttcctcagtgtatagatgagggggttgagggttg
ggctgaggactgagtacagcactgaggaaactttgcttctttctgggctg
tagctagaagcagggctgacataggcacagaacacagatgagtagtacac
agagaccacaatgaggtgggatgagcaggtagaaaaggccttcctcttgc
cctcagcagaacgcatgcgcaggatgctgccaatgatgtagccataggac
aacagtgttagcacgaagttgatgcctccataaaaggcatctgccacaag
tgtcataacactattaatgtatgtgggactacaggaaagcaggaggagtg
ggggtatctcacagaagaagtgggtgatgatcttgggtccacagaatgac
agccgtgtcatcagaccagtgtgtacagatgcattcagagcacagatgga
ccacacacccacggccagagcccacagagctgtgggctcatcctagagct
gtagtgtaggggaaaacagatggccacatagcggtcataggccatgaccg
tgagcagcagcagctcagaagatgctgaccacacaaggaaaaagagctgg
gccatgcatcctttgaaggagatggtgttttccccagacactaggccaac
cagggccttgggaatcacagaggaggtgcacacaatgtccatggtggcca
ggttgcacaggaaaaaagtacatgggactatgggagccagtgctggaggt
gaccaaagcgatgatcacaatgttgccattagagccatcatgtagaggga
caggaagcagccttatgagacatcttagatcagggtgcttctgagatcct
tccagcacaactctgtcaaccttctgtctggtccagtctagcattcatca
tgaagaatcagacaccacgtgtttgtcaggctcctggaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147890105_147891254
seq2: B6Ng01-345M23.g_67_1209 (reverse)

seq1  TATTTTCTCAGAACCTGACAAACACAGTGGTAGACCTGATACTCTTCATG  50
      |||||||   || |||||||||||| |||||    |||||  ||||||||
seq2  TATTTTCCAGGAGCCTGACAAACAC-GTGGT--GTCTGAT--TCTTCATG  45

seq1  ATG-ATGCTAAGACTGAACCAGACAGAAG--TGACAGAGTTTGTGCTGGA  97
      ||| ||||| |||||| ||||||||||||  |||||||| ||||||||||
seq2  ATGAATGCT-AGACTGGACCAGACAGAAGGTTGACAGAG-TTGTGCTGGA  93

seq1  AGGGTTCTCAG-AGCACCCTGATCTAAGATTGTTCCTCAT-AGGCTGCTT  145
      | || |||||| ||||||||||||||||| |||  ||||| |||||||||
seq2  A-GGATCTCAGAAGCACCCTGATCTAAGA-TGT--CTCATAAGGCTGCTT  139

seq1  CCTGTCCCTCTACATGATGGCTCTAATGGGCAACATTGTGATCATCGCTT  195
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTGTCCCTCTACATGATGGCTCTAAT-GGCAACATTGTGATCATCGCTT  188

seq1  TGGTCACCTCCAGCACTGGGCTCCATAGTCCCATGTAC-TTTTTCCTGTG  244
      |||||||||||||||||||   |||||||||||||||| |||||||||||
seq2  TGGTCACCTCCAGCACTGGCTCCCATAGTCCCATGTACTTTTTTCCTGTG  238

seq1  CAACCTGGCCACCATGGACATTGTGTGCACCTCCTCTGTGATTCCCAAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCCACCATGGACATTGTGTGCACCTCCTCTGTGATTCCCAAGG  288

seq1  CCCTGGTTGGCCTAGTGTCTGGGGAAAACACCATCTCCTTCAAAGGATGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTGGCCTAGTGTCTGGGGAAAACACCATCTCCTTCAAAGGATGC  338

seq1  ATGGCCCAGCTCTTTTTCCTTGTGTGGTCAGCATCTTCTGAGCTGCTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAGCTCTTTTTCCTTGTGTGGTCAGCATCTTCTGAGCTGCTGCT  388

seq1  GCTCACGGTCATGGCCTATGACCGCTATGTGGCCATCTGTTTTCCCCTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGGTCATGGCCTATGACCGCTATGTGGCCATCTGTTTTCCCCTAC  438

seq1  ACTACAGCTCTAGGATGAGCCCACAGCTCTGTGGGGCTCTGGCCGTGGGT  494
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTACAGCTCTAGGATGAGCCCACAGCTCTGT-GGGCTCTGGCCGTGGGT  487

seq1  GTGTGGTCCATCTGTGCTCTGAATGCATCTGTACACACTGGTCTGATGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCCATCTGTGCTCTGAATGCATCTGTACACACTGGTCTGATGAC  537

seq1  ACGGCTGTCATTCTGTGGACCCAAGATCATCACCCACTTCTTCTGTGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGTCATTCTGTGGACCCAAGATCATCACCCACTTCTTCTGTGAGA  587

seq1  TACCCCCACTCCTCCTGCTTTCCTGTAGTCCCACATACATTAATAGTGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACTCCTCCTGCTTTCCTGTAGTCCCACATACATTAATAGTGTT  637

seq1  ATGACACTTGTGGCAGATGCCTTTTATGGAGGCATCAACTTCGTGCTAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTGTGGCAGATGCCTTTTATGGAGGCATCAACTTCGTGCTAAC  687

seq1  ACTGTTGTCCTATGGCTACATCATTGGCAGCATCCTGCGCATGCGTTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCCTATGGCTACATCATTGGCAGCATCCTGCGCATGCGTTCTG  737

seq1  CTGAGGGCAAGAGGAAGGCCTTTTCTACCTGCTCATCCCACCTCATTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAAGAGGAAGGCCTTTTCTACCTGCTCATCCCACCTCATTGTG  787

seq1  GTCTCTGTGTACTACTCATCTGTGTTCTGTGCCTATGTCAGCCCTGCTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTACTACTCATCTGTGTTCTGTGCCTATGTCAGCCCTGCTTC  837

seq1  TAGCTACAGCCCAGAAAGAAGCAAAGTTTCCTCAGTGCTGTACTCAGTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGCCCAGAAAGAAGCAAAGTTTCCTCAGTGCTGTACTCAGTCC  887

seq1  TCAGCCCAACCCTCAACCCCCTCATCTATACACTGAGGAACAAGGATGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAACCCTCAACCCCCTCATCTATACACTGAGGAACAAGGATGTC  937

seq1  AAGCTTGCCCTGGGCAGAATCTTACCCTCTTTCTCACATTAAGAGGAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCCCTGGGCAGAATCTTACCCTCTTTCTCACATTAAGAGGAGAT  987

seq1  GTGTAGAATATCCTCCTGGACTGGGCTGTTCCTAGACATGCTTTCCTGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAATATCCTCCTGGACTGGGCTGTTCCTAGACATGCTTTCCTGAG  1037

seq1  AGCAGCTTCACGGAGCAAAGTGTACCCATCGCTGCTTCAGAAAACCTTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTCACGGAGCAAAGTGTACCCATCGCTGCTTCAGAAAACCTTTC  1087

seq1  TTTGATGCATGTACTGAGCAATTCCACTCACTGTAATTTCCAAAACAACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCATGTACTGAGCAATTCCACTCACTGTAATTTCCAAAACAACA  1137

seq1  GAATTC  1150
      ||||||
seq2  GAATTC  1143