BAC Information

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BAC

Clone NameB6Ng01-345P19
Chromosome7 (Build37)
Map Location 148,031,985 - 148,177,020
singlet/doubletdoublet
Overlap geneScgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1
Upstream geneGpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik
Downstream geneLOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345P19.bB6Ng01-345P19.g
ACCGA128016GA128017
length5531,146
definitionB6Ng01-345P19.b B6Ng01-345P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,176,462 - 148,177,020)(148,031,985 - 148,033,146)
sequence
cagacaaagtttgtcagcacagcagatatctttctcttcgaggtcaagca
gtggccatctacccaagatttgaggactgtctgcatcaggatttgcactt
ttcttgggcaccatgggaaaatggcagttgggattgacagttctctctgc
cctacctttccaggaaaggccaattatttgaaaagaggcccctacccagc
acgctgttaaccactgcccgcagcagggagccaaaagccttccacttagc
cccagtcacttcctgtaccaggcctggaggaaaacagatggtgaggtgcc
caggagccagtgagctgagagtgttccaactcagttccccatcttccatt
cccaatgcagcctctgttaggccagggaccctgttcccctttcacgcaca
gactgtgtgggagctcctagcacaggcatcttggcgttttacatttgggt
ttctgtttcccgtgagtcctgtctgtgcccagtctgcaaggtgaaaaggc
ttttcatgaactggacagtaagaattcctctaggccgggggtgggggtgg
ggg
gaattcctgcaaacactcctggtggggaccccggaagaactctacgaagg
gcccctgggcaagtacaatgtcaatgacatggccaagtcagcgctgagcg
agctcaagtcctgcatcgatgaactacagcctgtgcataaggagcaactg
gtcaagctgctggtaatcgggctgggactcccatccccgaatgtttgcag
ttcttccgagaccctcctggtgctggatcaccagtcctccccgatcccca
gatctccatcagccagcagagatggagacctcgcagagaagtttccaaag
tctcttagaactgcttcccccaccccaaaagaactacatcccacctaggc
agtacatgtgcacacagcccctccccagggtgctaggagaggtgggtcac
catgctcaggagtctgtctcctccactggtgtgcacagcactgtctgccg
ctgggactgggggatccggttgttggttaccaggtctcctggtccccaca
catctctctttcaggtgcaagtgctagatgctcaagaggacacataagca
gacccgaaacacggcttgacttccatgagcgacaggaccagccctacagc
gaccatggatgtgccgcgatcactgcttcttcacgaataaattcaccctc
gaactgttaaatcaataaagcctactgcagcccatgtgctggcttctctc
tctccctgcaacacagggacacacaaaaagtcctatcagaggcaccctga
gagataaaccaaaagatgcaaactcataatgcaagggtcactttccggaa
gcaatgtgtgaggtcggcctcgggaaaccacgtgaacacagggagctatc
taggaaggatggggataaaaggagcctaacacagaaggcaggctggcagg
gccttatgcataaaaaaaataatataataggcagagcacagccactgatg
catacgtttctgggagctttgaaaacacctcttctttccaaattcacccg
aggaaagagagttccagccctgagtcagatctgagagcttactgagtcaa
gtaggtaatcctgactgaacacaggaccagggtctgagggtggctttgca
gcaggaactgtagaccagctctggggtctgtttagggagaaagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148176462_148177020
seq2: B6Ng01-345P19.b_49_607 (reverse)

seq1  CCCCCACCCCCACCCCCGGCCTAGAGGAATTCTTACTGTCCAGTTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCACCCCCGGCCTAGAGGAATTCTTACTGTCCAGTTCATGA  50

seq1  AAAGCCTTTTCACCTTGCAGACTGGGCACAGACAGGACTCACGGGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTTTCACCTTGCAGACTGGGCACAGACAGGACTCACGGGAAACA  100

seq1  GAAACCCAAATGTAAAACGCCAAGATGCCTGTGCTAGGAGCTCCCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAAATGTAAAACGCCAAGATGCCTGTGCTAGGAGCTCCCACACA  150

seq1  GTCTGTGCGTGAAAGGGGAACAGGGTCCCTGGCCTAACAGAGGCTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCGTGAAAGGGGAACAGGGTCCCTGGCCTAACAGAGGCTGCATT  200

seq1  GGGAATGGAAGATGGGGAACTGAGTTGGAACACTCTCAGCTCACTGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAAGATGGGGAACTGAGTTGGAACACTCTCAGCTCACTGGCTC  250

seq1  CTGGGCACCTCACCATCTGTTTTCCTCCAGGCCTGGTACAGGAAGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACCTCACCATCTGTTTTCCTCCAGGCCTGGTACAGGAAGTGACT  300

seq1  GGGGCTAAGTGGAAGGCTTTTGGCTCCCTGCTGCGGGCAGTGGTTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAGTGGAAGGCTTTTGGCTCCCTGCTGCGGGCAGTGGTTAACAG  350

seq1  CGTGCTGGGTAGGGGCCTCTTTTCAAATAATTGGCCTTTCCTGGAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGGGTAGGGGCCTCTTTTCAAATAATTGGCCTTTCCTGGAAAGGT  400

seq1  AGGGCAGAGAGAACTGTCAATCCCAACTGCCATTTTCCCATGGTGCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGAGAACTGTCAATCCCAACTGCCATTTTCCCATGGTGCCCAA  450

seq1  GAAAAGTGCAAATCCTGATGCAGACAGTCCTCAAATCTTGGGTAGATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGCAAATCCTGATGCAGACAGTCCTCAAATCTTGGGTAGATGGC  500

seq1  CACTGCTTGACCTCGAAGAGAAAGATATCTGCTGTGCTGACAAACTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTGACCTCGAAGAGAAAGATATCTGCTGTGCTGACAAACTTTGT  550

seq1  CTGGAATTC  559
      |||||||||
seq2  CTGGAATTC  559

seq1: chr7_148031985_148033146
seq2: B6Ng01-345P19.g_68_1213

seq1  GAATTCCTGCAAACACTCCTGGTGGGGACCCCGGAAGAACTCTACGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAAACACTCCTGGTGGGGACCCCGGAAGAACTCTACGAAGG  50

seq1  GCCCCTGGGCAAGTACAATGTCAATGACATGGCCAAGTCAGCGCTGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGCAAGTACAATGTCAATGACATGGCCAAGTCAGCGCTGAGCG  100

seq1  AGCTCAAGTCCTGCATCGATGAACTACAGCCTGTGCATAAGGAGCAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTCCTGCATCGATGAACTACAGCCTGTGCATAAGGAGCAACTG  150

seq1  GTCAAGCTGCTGGTAATCGGGCTGGGACTCCCATCCCCGAATGTTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGCTGGTAATCGGGCTGGGACTCCCATCCCCGAATGTTTGCAG  200

seq1  TTCTTCCGAGACCCTCCTGGTGCTGGATCACCAGTCCTCCCCGATCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCGAGACCCTCCTGGTGCTGGATCACCAGTCCTCCCCGATCCCCA  250

seq1  GATCTCCATCAGCCAGCAGAGATGGAGACCTCGCAGAGAAGTTTCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCATCAGCCAGCAGAGATGGAGACCTCGCAGAGAAGTTTCCAAAG  300

seq1  TCTCTTAGAACTGCTTCCCCCACCCCAAAAGAACTACATCCCACCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGAACTGCTTCCCCCACCCCAAAAGAACTACATCCCACCTAGGC  350

seq1  AGTACATGTGCACACAGCCCCTCCCCAGGGTGCTAGGAGAGGTGGGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGTGCACACAGCCCCTCCCCAGGGTGCTAGGAGAGGTGGGTCAC  400

seq1  CATGCTCAGGAGTCTGTCTCCTCCACTGGTGTGCACAGCACTGTCTGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAGGAGTCTGTCTCCTCCACTGGTGTGCACAGCACTGTCTGCCG  450

seq1  CTGGGACTGGGGGATCCGGTTGTTGGTTACCAGGTCTCCTGGTCCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGGGGGATCCGGTTGTTGGTTACCAGGTCTCCTGGTCCCCACA  500

seq1  CATCTCTCTTTCAGGTGCAAGTGCTAGATGCTCAAGAGGACACATAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTTTCAGGTGCAAGTGCTAGATGCTCAAGAGGACACATAAGCA  550

seq1  GACCCGAAACACGGCTTGACTTCCATGAGCGACAGGACCAGCCCTACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGAAACACGGCTTGACTTCCATGAGCGACAGGACCAGCCCTACAGC  600

seq1  GACCATGGATGTGCCGCGATCACTGCTTCTTCACGAATAAATTCACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGATGTGCCGCGATCACTGCTTCTTCACGAATAAATTCACCCTC  650

seq1  GAACTGTTAAATCAATAAAGCCTACTGCAGCCCATGTGCTGGCTTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTAAATCAATAAAGCCTACTGCAGCCCATGTGCTGGCTTCTCTC  700

seq1  TCTCCCTGCAACACAGGGACACACAAAAAGTCCTATCAGAGGCACCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCAACACAGGGACACACAAAAAGTCCTATCAGAGGCACCCTGA  750

seq1  GAGATAAACCAAAAGATGCAAACTCATAATGCAA-GGTCACTTTCCGGAA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGATAAACCAAAAGATGCAAACTCATAATGCAAGGGTCACTTTCCGGAA  800

seq1  GCAATGTGTGAGGTCGGCCTCGGGAAACCACGTGAACACAGGGAGCTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGTGAGGTCGGCCTCGGGAAACCACGTGAACACAGGGAGCTATC  850

seq1  TAGGAAGGATGGGGATAAAAGGAGCCTAACACAGAAAGGCAGGCTGGCAG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGGAAGGATGGGGATAAAAGGAGCCTAACACAG-AAGGCAGGCTGGCAG  899

seq1  GG-CTTATGCATAAAAAAAATAATAATAATAAGGCAAGAGCACAGCCAAC  948
      || ||||||||||||||||||||| ||||| |||| ||||||||||| ||
seq2  GGCCTTATGCATAAAAAAAATAAT-ATAAT-AGGC-AGAGCACAGCC-AC  945

seq1  TGATGCATACG-TTCTGGGAGCTTTGAAAACAACCTC-TCTTCCCAAAAT  996
      ||||||||||| ||||||||||||||||||| ||||| |||| ||||| |
seq2  TGATGCATACGTTTCTGGGAGCTTTGAAAAC-ACCTCTTCTTTCCAAATT  994

seq1  CACCCGAGGAAAGAGAG-TCCAG-CCTGAGTCAGAACCTGAAGAGCCTTA  1044
      ||||||||||||||||| ||||| |||||||||| | ||| |||| ||||
seq2  CACCCGAGGAAAGAGAGTTCCAGCCCTGAGTCAG-ATCTG-AGAG-CTTA  1041

seq1  CTGAGGTCAAGTAGGGAAACCCTGACTGAACACAAGGACACAGGGGGTTC  1094
      |||| |||||||| || || ||||||||||||| ||||| |||||   ||
seq2  CTGA-GTCAAGTA-GGTAATCCTGACTGAACAC-AGGAC-CAGGG---TC  1084

seq1  TGAGGGGTGGGCTTTGCCAGCAGGGAAACTGGAAGAACAAGCTCTGGGGA  1144
      ||||||   ||||||| |||||||  ||||| |   || |||||||||| 
seq2  TGAGGG--TGGCTTTG-CAGCAGG--AACTGTA--GACCAGCTCTGGGG-  1126

seq1  GCTG--TAGGGAGAAAGCAA  1162
       |||  ||||||||||||||
seq2  TCTGTTTAGGGAGAAAGCAA  1146