BAC Information

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BAC

Clone NameB6Ng01-347B10
Chromosome7 (Build37)7 (Build37)
Map Location 15,524,008 - 15,524,38815,120,558 - 15,121,759
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365
Downstream geneLOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B10.bB6Ng01-347B10.g
ACCGA128799GA128800
length3351,207
definitionB6Ng01-347B10.b B6Ng01-347B10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,524,008 - 15,524,388)(15,120,558 - 15,121,759)
sequence
tttgaagtctgtaacttcttccttccttcatgcctgccttctctttcctt
ccttccttccttccttccttccttccatacttccttccttccttccttcc
tgcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgactgccta
cctgcctgccttcctgcctgcctgcctgactgcctgcctgcctgcctgcc
tgcctgccagcctgcctgcaatcctgcctgcctgccttcctgccttcctg
ccttccagccagcctgcctgcctgcctgccttcctgccttcctgcctgcc
tgcctgcctaactgcctgtctgccttcctgccttc
gaattcagggccactgagtaccagaacaaggtctgaagttctgaccttct
cttttacttgtttgctgctgttaaaatagtgactttccattcaggcaaca
attctctgatcagaaatctgcatcttggtgcttctctgcttaaaatgtct
gggcacaattgggaagatggacatatgtgtacctgaggctggaccttgat
ttctgctttaactgggttactattgtggaggcacattatatacccaggga
ttctgggacttagacaccagggcttctagttaaacactgccaccaacttg
tagcttagtgattctcagtgttcagactgcttcagtacctcacagtatgt
tgacacacagtcatgatatagttttattgttactctatgactctaatttt
gtaactgttatgggtcataaatatgaacagctgatattttcattcttaga
tgtgaaagggacatcagattccaaaagggaccactactcacacgttgata
actgttgtcctacataaacattccctcgaatttgggagtctatttttgct
aatcctactttcctgtttcagtcttaatatcaagatatgtagatatttct
gtcttggtctttctgtatctttatccctgctgtgtctaaggtttttcttc
tttttcaggccacaagcttttcatccaggatctataaattgctgctctgg
cagtggcaagcatgttttcctctgagacttacttagactcacatatccta
atcaagaacttccaagatatgttgacatggaagattccccagaatattcc
agaatgactcaaatacatacttgaaaactctaaatctgtttctggttaaa
catgttctcctgggacttagctgttgttgcatctgctgttgtagaggcca
tggttcgcagcatatctacttcatagcaactccccttctgttgccatgaa
aaaaacaaaaacaaaataccagagctgaccatcatgagatagtcaaagtc
catggcctaagaagattactaaattggacagaaacactcatattcactgc
ttggatccagcaatgcaagggaaattatggtcttgaagcagacaaatgga
gtcaagttactctttcctccccaacgcttaggatgtagagttgtttgggt
caatgtcctgcctagtgccatggtccatgggagaagggatcactggggtg
tgtgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15524008_15524388
seq2: B6Ng01-347B10.b_44_384

seq1  GAATTCTTTGAAGTCTGTAACTTCTTCCTTCCTTCATGCCTGCCTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAGTCTGTAACTTCTTCCTTCCTTCATGCCTGCCTTCTCT  50

seq1  TTCCTTCCTTCCTTCCTTCATTCCTTCCTTC----CTGCCTTCCTGCCTG  96
      ||||||||||||||||||| |||||||||||    || ||||||| ||| 
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCATACTTCCTTCCTTCCTT  100

seq1  CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCTGCCTTCCTGCCTTCC  146
      ||| ||||||||||||||||||||||||||| ||||||| |||||||  |
seq2  CCTTCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGAC  150

seq1  TGCCTTCCTGCCTGCCTTCCTCCCTGCCTGCCTGCCTGCCTTCCTGCCTT  196
      ||||| ||||||||||||||| |||||||||||| |||||| ||||||| 
seq2  TGCCTACCTGCCTGCCTTCCTGCCTGCCTGCCTGACTGCCTGCCTGCCTG  200

seq1  CCTGCCTTCATGCCTGCCTGCCTGCCTTCCTGCCTTCCTGCCTGCCTGTC  246
      ||||||| | |||| ||||||||||  |||||    |||||||||||  |
seq2  CCTGCCTGCCTGCCAGCCTGCCTGCAATCCTG----CCTGCCTGCCTTCC  246

seq1  TGCCTTCCTGCCTTCTTGCCTGCCTGCCTGTCTGCTTTCCTGCCTTCCTG  296
      |||||||||||||||  ||| ||||||||| |||    ||||||||||||
seq2  TGCCTTCCTGCCTTCCAGCCAGCCTGCCTGCCTG----CCTGCCTTCCTG  292

seq1  ACTTCTTGCCTGCCTGCCTGCCTTCCTGCCTGCCTGCGTGCCTTCCTGCC  346
       |||| |||||||||||||||||  ||||||| |    ||||||||||||
seq2  CCTTCCTGCCTGCCTGCCTGCCTAACTGCCTGTC----TGCCTTCCTGCC  338

seq1  TTCCTGCCTTCCTGACTTCCTGCCTTCCTGCCTTC  381
      |||                                
seq2  TTC--------------------------------  341

seq1: chr7_15120558_15121759
seq2: B6Ng01-347B10.g_72_1278

seq1  GAATTCAGGG-GACTGAGTACCAGAACAAGGTCTGAAGTTCTGACCTTCT  49
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCACTGAGTACCAGAACAAGGTCTGAAGTTCTGACCTTCT  50

seq1  CTTTTACTTGTTTGCTGCTGTTAAAATAGTGACTTTCCATTCAGGCAACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTGTTTGCTGCTGTTAAAATAGTGACTTTCCATTCAGGCAACA  100

seq1  ATTCTCTGATCAGAAATCTGCATCTTGGTGCTTCTCTGCTTAAAATGTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGATCAGAAATCTGCATCTTGGTGCTTCTCTGCTTAAAATGTCT  150

seq1  GGGCACAATTGGGAAGATGGACATATGTGTACCTGAGGCTGGACCTTGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAATTGGGAAGATGGACATATGTGTACCTGAGGCTGGACCTTGAT  200

seq1  TTCTGCTTTAACTGGGTTACTATTGTGGAGGCACATTATATACCCAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTAACTGGGTTACTATTGTGGAGGCACATTATATACCCAGGGA  250

seq1  TTCTGGGACTTAGACACCAGGGCTTCTAGTTAAACACTGCCACCAACTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGACTTAGACACCAGGGCTTCTAGTTAAACACTGCCACCAACTTG  300

seq1  TAGCTTAGTGATTCTCAGTGTTCAGACTGCTTCAGTACCTCACAGTATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGTGATTCTCAGTGTTCAGACTGCTTCAGTACCTCACAGTATGT  350

seq1  TGACACACAGTCATGATATAGTTTTATTGTTACTCTATGACTCTAATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACAGTCATGATATAGTTTTATTGTTACTCTATGACTCTAATTTT  400

seq1  GTAACTGTTATGGGTCATAAATATGAACAGCTGATATTTTCATTCTTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTTATGGGTCATAAATATGAACAGCTGATATTTTCATTCTTAGA  450

seq1  TGTGAAAGGGACATCAGATTCCAAAAGGGACCACTACTCACACGTTGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGGGACATCAGATTCCAAAAGGGACCACTACTCACACGTTGATA  500

seq1  ACTGTTGTCCTACATAAACATTCCCTCGAATTTGGGAGTCTATTTTTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCCTACATAAACATTCCCTCGAATTTGGGAGTCTATTTTTGCT  550

seq1  AATCCTACTTTCCTGTTTCAGTCTTAATATCAAGATATGTAGATATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTTTCCTGTTTCAGTCTTAATATCAAGATATGTAGATATTTCT  600

seq1  GTCTTGGTCTTTCTGTATCTTTATCCCTGCTGTGTCTAAGGTTTTTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTCTTTCTGTATCTTTATCCCTGCTGTGTCTAAGGTTTTTCTTC  650

seq1  TTTTTCAGGCCACAAGCTTTTCATCCAGGATCTATAAATTGCTGCTCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGCCACAAGCTTTTCATCCAGGATCTATAAATTGCTGCTCTGG  700

seq1  CAGTGGCAAGCATGTTTTCCTCTGAGACTTACTTAGACTCACATATCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCAAGCATGTTTTCCTCTGAGACTTACTTAGACTCACATATCCTA  750

seq1  ATCAAGAACTTCCAAGATATGTTGACATGGAAGATTCCCCAGAATATTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAACTTCCAAGATATGTTGACATGGAAGATTCCCCAGAATATTCC  800

seq1  AGAATGACTCAAATACATACTTGAAAACTCTAAATCTGTTTCTGGTTAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTCAAATACATACTTGAAAACTCTAAATCTGTTTCTGGTTAAA  850

seq1  CATGTTCTCCTGGGACTTAGCTGTTGTTGCATCTGCTGTTGTAGAGGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCCTGGGACTTAGCTGTTGTTGCATCTGCTGTTGTAGAGGCCA  900

seq1  TGGTTCGCAGCATATCTACTTCATAGCAACTCCCCTTCTGTTGCCATGAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGTTCGCAGCATATCTACTTCATAGCAACTCCCCTTCTGTTGCCATG-A  949

seq1  AAAAAACAAAAAACAAAAATACCAGAGCTGACCATCATGAGATAGTCAAA  999
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAA--CAAAATACCAGAGCTGACCATCATGAGATAGTCAAA  997

seq1  GTCCATGGCCTAAGAAGATTACTAAATTGGACAGAAACACTCATA-TCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCCATGGCCTAAGAAGATTACTAAATTGGACAGAAACACTCATATTCAC  1047

seq1  TGC-TGGATCCAGCAATGCAAGGGAAA-TATGGTC-TGAAGCAGACAAAT  1095
      ||| ||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TGCTTGGATCCAGCAATGCAAGGGAAATTATGGTCTTGAAGCAGACAAAT  1097

seq1  -GAGTCAAAGTAACTC-TTCCTCCC--ACGCTTAGGATGTAGAGTTGTTT  1141
       ||||| |||| |||| ||||||||  |||||||||||||||||||||||
seq2  GGAGTC-AAGTTACTCTTTCCTCCCCAACGCTTAGGATGTAGAGTTGTTT  1146

seq1  TGGTCCATGT-CTGCTTAGTTGGCATGGTCGCATGGGGAGAAGGG-TCAC  1189
       |||| |||| |||| ||| || ||||||| ||| |||||||||| ||||
seq2  GGGTCAATGTCCTGCCTAG-TGCCATGGTC-CAT-GGGAGAAGGGATCAC  1193

seq1  T-GGGTGTGTGACT  1202
      | ||||||||||||
seq2  TGGGGTGTGTGACT  1207