BAC Information

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BAC

Clone NameB6Ng01-347M08
Chromosome7 (Build37)
Map Location 138,392,873 - 138,593,826
singlet/doubletdoublet
Overlap gene5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb
Upstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik
Downstream geneHmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347M08.bB6Ng01-347M08.g
ACCGA129274GA129275
length1,1261,079
definitionB6Ng01-347M08.b B6Ng01-347M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,592,802 - 138,593,826)(138,392,873 - 138,393,953)
sequence
gaattctctacattcacttatgggcattgaaccccaagtctgtgaaaggg
tcttctttttcttatttttaataaaaagtcataacatttagttaaaattt
ccaaagtgacattttaacaattagttttgtgtaaataatttataacttta
aatgctttagaagaaaacatgtattatttacattttatgtatatttgtgt
ccttgagtgtatgtacagtgcactgtacatatgcaagtacctgcagaggc
tggaagagggcatcaggtttcctgtagctggagttcgaggaggctgtgag
atgccctgaggtattagaaaccagacccttgctggctgtggtggcgcacg
cctttaatcccagcacctgggaagcagaggcaggcggatttctgagttca
aggccagcctggtctacaaagtgagttccaggacatccagggcaatacag
agaaatcctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaggaaccaga
ccctggtcctttgcaaggacagcagacgttcttgactgctcagccttcag
ctcctgcccccaattacaccttaaattattttgaaaaaaaaaaaaagtac
cctggaccatgggtacatggaaagattatattagatataagaaatgtggc
agcagaattctgaatataaaagctagaaagaataagcccattcatgggac
tgagagtcacctgctagctctaggccaggaatgcaagacctcagagagaa
tggagacctcaggtgtcctctgctgaagtgaccaggtggccctggagggg
aaaccacaaactgaagtcctaagatggtacaggaattcaggaattggaga
ccatttttttttagaagtcaagcgaataggacagcggctgaagagtaaga
ggtggatcttgagagaaacgacataaaagcctcaaaccaaagaaccaatt
aaccccgaacacaagggcactgcctgctcctgctgaaccctgctggacat
gaacaagatgatgagggctgcctttcagagctattgaaatgccagcggat
gttctgccctttgcctagatgtgcatgctttcctagaatggagcagcggg
ctgctgcctgcatcggactctggcat
gaattcaacagaaaggaagtcatgtagctgggtcattgtgtatgattttt
ctggtcagtctacagagggaagggaactctatccaagatcaggaggggaa
aagaaatgagtgtctgcaaactatttgtcaaaactttgaagtagtaacat
gctcattcattggcacttagttataaaatgcctgcgtgatgctggctcta
gtctggttttcttggtttagattttttgaaacttctatttctcaatccag
tacaccataaggtactatctttcctgaaagtaacataaactagaatggca
ttgtgataactcatacaaacatcatggtacatctgtctgtcctctatgac
atgagggggaaaatgggtgggatggagccctcataagcaggtaggttggc
tactcttcagttgaactggctttcagggcaagaatctaggaagaccgtta
gagaagtacatattctagggaactagagctcaggtagtaaagcactggtc
ttacaaatggaaagacctaagttttagcccagggactcacatttaaaaaa
aaatatctaagcatattgctgtgtgcttctaacaccaacattatagtgag
aaagagaggtggatttggggggctcctgagcaagccagcctaacttaaga
gactgtgtctcaaaaaacaaggtgggtggcacctgagaaataacataagg
ttggcctctgcctaccccatgcacacatatgtacatgtacctatacaaat
atacacacaaaagtgtacctgcatggtccgcaagcaccctcaatgttaca
tgtatctagtgtcactttcatcattttcaggtcctgcctgccaattgtat
atatttcatcctcccatgctccctcctagatctacacatgccagtcaaac
tgcagctatcccgaccagcacaccacttcccacttctctgattcccactt
gtgaataatctgatgcaactctagatttcacttctgggaaatgcagggtg
cattcctgaagatgccaactacactctctcaatctgctttacagaaggag
tcactcctgtgggaggagtcattacaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138592802_138593826
seq2: B6Ng01-347M08.b_143_1171 (reverse)

seq1  ATGCCAG-----------GGCAGCAGCCCGCTGCTCCATTCTAGGAAAGC  39
      |||||||           ||||||||||||||||||||||||||||||||
seq2  ATGCCAGAGTCCGATGCAGGCAGCAGCCCGCTGCTCCATTCTAGGAAAGC  50

seq1  ATTGCACATTCTAGGCAAAGGGCAGAACATCCCGCTGGCATTTCAAATAG  89
      | |||||| ||||||||||||||||||||| ||||||||||||| |||||
seq2  A-TGCACA-TCTAGGCAAAGGGCAGAACAT-CCGCTGGCATTTC-AATAG  96

seq1  CTCTTGAAAGGCAGCCCTCATCCATTCTTGTTCATGTCCAGCAGGGTTCA  139
      ||| ||||||||||||||||||   |||||||||||||||||||||||||
seq2  CTC-TGAAAGGCAGCCCTCATC--ATCTTGTTCATGTCCAGCAGGGTTCA  143

seq1  GCAGGAGCAGGCAGTGCCCTTGTGTTCGGGGTTAATTGGTTCTTTGGTTT  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCAGGCAGTGCCCTTGTGTTCGGGGTTAATTGGTTCTTTGGTTT  193

seq1  GAGGCTTTTATGTCGTTTCTCTCAAGATCCACCTCTTACTCTTCAGCCGC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTATGTCGTTTCTCTCAAGATCCACCTCTTACTCTTCAGCCGC  243

seq1  TGTCCTATTCGCTTGACTTCTAAAAAAAAATGGTCTCCAATTCCTGAATT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATTCGCTTGACTTCTAAAAAAAAATGGTCTCCAATTCCTGAATT  293

seq1  CCTGTACCATCTTAGGACTTCAGTTTGTGGTTTCCCCTCCAGGGCCACCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCATCTTAGGACTTCAGTTTGTGGTTTCCCCTCCAGGGCCACCT  343

seq1  GGTCACTTCAGCAGAGGACACCTGAGGTCTCCATTCTCTCTGAGGTCTTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTCAGCAGAGGACACCTGAGGTCTCCATTCTCTCTGAGGTCTTG  393

seq1  CATTCCTGGCCTAGAGCTAGCAGGTGACTCTCAGTCCCATGAATGGGCTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGGCCTAGAGCTAGCAGGTGACTCTCAGTCCCATGAATGGGCTT  443

seq1  ATTCTTTCTAGCTTTTATATTCAGAATTCTGCTGCCACATTTCTTATATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTAGCTTTTATATTCAGAATTCTGCTGCCACATTTCTTATATC  493

seq1  TAATATAATCTTTCCATGTACCCATGGTCCAGGGTACTTTTTTTTTTTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATCTTTCCATGTACCCATGGTCCAGGGTACTTTTTTTTTTTTT  543

seq1  CAAAATAATTTAAGGTGTAATTGGGGGCAGGAGCTGAAGGCTGAGCAGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTTAAGGTGTAATTGGGGGCAGGAGCTGAAGGCTGAGCAGTC  593

seq1  AAGAACGTCTGCTGTCCTTGCAAAGGACCAGGGTCTGGTTCCTTTTTTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTCTGCTGTCCTTGCAAAGGACCAGGGTCTGGTTCCTTTTTTTT  643

seq1  TTTTTTTTTTTGGTTTTTCGAGACAGGATTTCTCTGTATTGCCCTGGATG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGGTTTTTCGAGACAGGATTTCTCTGTATTGCCCTGGATG  693

seq1  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGC  743

seq1  CTGCCTCTGCTTCCCAGGTGCTGGGATTAAAGGCGTGCGCCACCACAGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCTTCCCAGGTGCTGGGATTAAAGGCGTGCGCCACCACAGCC  793

seq1  AGCAAGGGTCTGGTTTCTAATACCTCAGGGCATCTCACAGCCTCCTCGAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGTCTGGTTTCTAATACCTCAGGGCATCTCACAGCCTCCTCGAA  843

seq1  CTCCAGCTACAGGAAACCTGATGCCCTCTTCCAGCCTCTGCAGGTACTTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTACAGGAAACCTGATGCCCTCTTCCAGCCTCTGCAGGTACTTG  893

seq1  CATATGTACAGTGCACTGTACATACACTCAAGGACACAAATATACATAAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTACAGTGCACTGTACATACACTCAAGGACACAAATATACATAAA  943

seq1  ATGTAAATAATACATGTTTTCTTCTAAAGCATTTAAAGTTATAAATTATT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAATACATGTTTTCTTCTAAAGCATTTAAAGTTATAAATTATT  993

seq1  TACACAAAACTAATTGTTAAAATGTCACTTTGGAAA  1025
      ||||||||||||||||||||||||||||||||||||
seq2  TACACAAAACTAATTGTTAAAATGTCACTTTGGAAA  1029

seq1: chr7_138392873_138393953
seq2: B6Ng01-347M08.g_67_1145

seq1  GAATTCAACAGAAAGGAAGTCATGTAGCTGGGTCATTGTGTATGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAAAGGAAGTCATGTAGCTGGGTCATTGTGTATGATTTTT  50

seq1  CTGGTCAGTCTACAGAGGGAAGGGAACTCTATCCAAGATCAGGAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGTCTACAGAGGGAAGGGAACTCTATCCAAGATCAGGAGGGGAA  100

seq1  AAGAAATGAGTGTCTGCAAACTATTTGTCAAAACTTTGAAGTAGTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAGTGTCTGCAAACTATTTGTCAAAACTTTGAAGTAGTAACAT  150

seq1  GCTCATTCATTGGCACTTAGTTATAAAATGCCTGCGTGATGCTGGCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCATTGGCACTTAGTTATAAAATGCCTGCGTGATGCTGGCTCTA  200

seq1  GTCTGGTTTTCTTGGTTTAGATTTTTTGAAACTTCTATTTCTCAATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTTCTTGGTTTAGATTTTTTGAAACTTCTATTTCTCAATCCAG  250

seq1  TACACCATAAGGTACTATCTTTCCTGAAAGTAACATAAACTAGAATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCATAAGGTACTATCTTTCCTGAAAGTAACATAAACTAGAATGGCA  300

seq1  TTGTGATAACTCATACAAACATCATGGTACATCTGTCTGTCCTCTATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAACTCATACAAACATCATGGTACATCTGTCTGTCCTCTATGAC  350

seq1  ATGAGGGGGAAAATGGGTGGGATGGAGCCCTCATAAGCAGGTAGGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGGGAAAATGGGTGGGATGGAGCCCTCATAAGCAGGTAGGTTGGC  400

seq1  TACTCTTCAGTTGAACTGGCTTTCAGGGCAAGAATCTAGGAAGACCGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCAGTTGAACTGGCTTTCAGGGCAAGAATCTAGGAAGACCGTTA  450

seq1  GAGAAGTACATATTCTAGGGAACTAGAGCTCAGGTAGTAAAGCACTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTACATATTCTAGGGAACTAGAGCTCAGGTAGTAAAGCACTGGTC  500

seq1  TTACAAATGGAAAGACCTAAGTTTTAGCCCAGGGACTCACATTTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGGAAAGACCTAAGTTTTAGCCCAGGGACTCACATTTAAAAAA  550

seq1  AAATATCTAAGCATATTGCTGTGTGCTTCTAACACCAACATTATAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAGCATATTGCTGTGTGCTTCTAACACCAACATTATAGTGAG  600

seq1  AAAGAGAGGTGGATTTGGGGGGCTCCTGAGCAAGCCAGCCTAACTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGTGGATTTGGGGGGCTCCTGAGCAAGCCAGCCTAACTTAAGA  650

seq1  GACTGTGTCTCAAAAAACAAGGTGGGTGGCACCTGAGAAATAACATAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTCTCAAAAAACAAGGTGGGTGGCACCTGAGAAATAACATAAGG  700

seq1  TTGGCCTCTGCCTACCCCATGCACACATATGTACATGTACCTATACAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCTGCCTACCCCATGCACACATATGTACATGTACCTATACAAAT  750

seq1  ATACACACAAAAGTGTAACCTGCATGGTCCGCAAGCACCCTCAATG-TAC  799
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  ATACACACAAAAGTGT-ACCTGCATGGTCCGCAAGCACCCTCAATGTTAC  799

seq1  ATGTATCTAGTGTCACTTTCAATCATTTTCAGGTCCTGCCTGCCAATTGT  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTATCTAGTGTCACTTTC-ATCATTTTCAGGTCCTGCCTGCCAATTGT  848

seq1  ATATATTTCATCCTCCCATGCT-CCTCCTAGATCTACACATGCCAGTCAA  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATATTTCATCCTCCCATGCTCCCTCCTAGATCTACACATGCCAGTCAA  898

seq1  ACTGCAGCTATCCCGACCAGCCACACCACTTCCCAC-TCTCTGATTCCCA  947
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ACTGCAGCTATCCCGACCAG-CACACCACTTCCCACTTCTCTGATTCCCA  947

seq1  CTGTAGAATAATCTGATGCAACTCTAGATTTCACTTCTGGGAAAATGCCA  997
      ||   |||||||||||||||||||||||||||||||||||| ||||||  
seq2  CTTGTGAATAATCTGATGCAACTCTAGATTTCACTTCTGGG-AAATGCAG  996

seq1  GGTGCATTCCTGAAGATGCCAACTACAACTCTCTC-ATCTGCTTTCACAG  1046
      |||||||||||||||||||||||||| |||||||| ||||||||| ||||
seq2  GGTGCATTCCTGAAGATGCCAACTAC-ACTCTCTCAATCTGCTTT-ACAG  1044

seq1  AAGGAAGTCACTCCTGT-GGAGGAGTCATTTCAAAT  1081
      |||| |||||||||||| |||||||||||| |||||
seq2  AAGG-AGTCACTCCTGTGGGAGGAGTCATTACAAAT  1079