BAC Information

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BAC

Clone NameB6Ng01-348I23
Chromosome7 (Build37)
Map Location 10,819,929 - 10,821,095
singlet/doubletsinglet
Overlap geneLOC665663
Upstream geneLOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52
Downstream geneV1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348I23.bB6Ng01-348I23.g
ACCGA129820GA129821
length1,165943
definitionB6Ng01-348I23.b B6Ng01-348I23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgttctccctgcttgatattaagtatttggtagcacagcttt
cttcagtgttagaagcaatgaaacaaatagaagacagtgtgagaacactc
ttgtgctcataattgcaaagtcactctgccttttctgaaagggctatttg
tctttatagacataagattctgctcacaaagttcattatggtctcatcca
ctgaaaatcaatgtcctttatagtaaatacattctaggtcttattaactt
acatgtctaatgggaaatataattgataaaaggattacacacacacacac
acacacacacacacacacacacacatacacacacatacacacacacacac
atctgtaaaatttaaattctacaaacttcattatttgaccatttttcatg
gtgtgaatcagatacaaagtgctccctaagtttcattaccggacaaaaat
aaagactctgtattcatcaatcttagatatttaacttcctatggattaca
ggtgagacttcatggttgctttctactttctgcagtactttcattgagta
tataagaatatactcaatgttataaaaagtggaagatgtagagtgttagt
aatgaatgtataaggaagaacagtggtaacaatttatgagtcactgctat
tctctccattggacatttattttgcttgttactcctacagcaacagtcag
gtagataaatggaatacaattgaagaaccagaaatgaacccacccactta
cggtcacttgatctttgacaagggagctaaaaccacccactggaaaaaag
acagcatttttcaacaaatggtgctggcacaactgacagttaccatgtag
aagaatgtgaattgatccattcttatctccttgtacaaagctcaagtcta
aatgcgtaaaggaactccacataaaatcagagacactgaaatatatagaa
gaaaaagaggggaaaagccttgaagatatggcacagggggaaaatccctg
aacagagcagcaatggcttgtgctgtaagatcaagaatagaacaaatggg
agctcataaattgcaaagcttctataagcaaagaacgctgtcaataagaa
caaaagctactaacagaataggaaggaatcttaccatcctaatctggata
ggcacctaatattca
gaattctttgtttagctctctattgcccaagcttttgtccctgccggcaa
gaacacactccggacaaccagaatattctgcggcaaagcttttattgctt
acttatcaggagggaagaccccaaaccaggaaaatggcactgcttatata
gcctgcagcatgatgtttcagcacctgatgtggcgtgacagctcctgatt
atttgctagcccatcaccccatcactacgctgggagatgggcagtgacta
ggggtgagttcactcttgcacttgtgcataaggattatttattagttagg
tgcagtggaagccagcaccatcttataatggcaattgctcacagcacggc
tctccacagctctgggcccattttttaatttgtgaaacacatgaaactct
aaaagaattaagactaaagtgtggacactttgcccctttttaaaattcag
gacaaaacaaacagagaaggagttacagagacacagtttggagctgagat
gaaaggctggaccacctagagactgccatatccgaggatccatcacataa
tctgcttccaaacgctgacaccattgcatagactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactataccggggcctagaaa
acacagaagtgaatgctcacagtcagctattggatggatcaaagggcccc
caatggaggagctagagaaagtatccaaggtactggggggatctgcaacc
ctataggtggaacaacaatatgaactaaccagtaccccctggagctcgtt
tctctagctgcatatgtatcagaagatggcctagttgggcaatcagcaga
ttgagaggcccattggtcttggcaaattttatatgcctctatactgggga
acgccagggattaagaagtgggtagttgggttggttgggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10819929_10821095
seq2: B6Ng01-348I23.b_50_1214 (reverse)

seq1  TGAATATTAGTCCCCTAT-CAGATTTAGGATTGGTAAAGATCCTTTCCCT  49
      ||||||||||   ||||| |||| |||||| |||| ||||| | ||||  
seq2  TGAATATTAGGTGCCTATCCAGA-TTAGGA-TGGT-AAGATTCCTTCCTA  47

seq1  ATCTGTTAGTAGCCTTTTTGTCTTATTGACAGCGTCTTTTGCCTTATAGA  99
       ||||||||||| |||||  |||||||||||||||  |||| ||||||||
seq2  TTCTGTTAGTAG-CTTTTGTTCTTATTGACAGCGTTCTTTG-CTTATAGA  95

seq1  AGCTTTGCAATTTTATGAGCTCCCATTTG-TCTATTCTTGATCTTACAGC  148
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AGCTTTGCAA-TTTATGAGCTCCCATTTGTTCTATTCTTGATCTTACAGC  144

seq1  ACAAGCCATTGCTGCTCTGTTCAGGGATTTTCCCCCTGTGCCCATATCTT  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAAGCCATTGCTGCTCTGTTCAGGGATTTTCCCCCTGTG-CCATATCTT  193

seq1  CAAGGCTTTTCCCCTCTTTTTCTTCTATATATTTCAGTGTCTCTGATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTTTCCCCTCTTTTTCTTCTATATATTTCAGTGTCTCTGATTTT  243

seq1  ATGTGGAGTTCCTTTACGCATTTAGACTTGAGCTTTGTACAAGGAGATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGTTCCTTTACGCATTTAGACTTGAGCTTTGTACAAGGAGATAA  293

seq1  GAATGGATCAATTCACATTCTTCTACATGGTAACTGTCAGTTGTGCCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATCAATTCACATTCTTCTACATGGTAACTGTCAGTTGTGCCAGC  343

seq1  ACCATTTGTTG-AAAATGCTGTCTTTTTTCCAGTGGGTGGTTTTAGCTCC  397
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTTGAAAAATGCTGTCTTTTTTCCAGTGGGTGGTTTTAGCTCC  393

seq1  CTTGTCAAAGATCAAGTGACCGTAAGTGGGTGGGTTCATTTCTGGTTCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAAGATCAAGTGACCGTAAGTGGGTGGGTTCATTTCTGGTTCTT  443

seq1  CAATTGTATTCCATTTATCTACCTGACTGTTGCTGTAGGAGTAACAAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTATTCCATTTATCTACCTGACTGTTGCTGTAGGAGTAACAAGCA  493

seq1  AAATAAATGTCCAATGGAGAGAATAGCAGTGACTCATAAATTGTTACCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGTCCAATGGAGAGAATAGCAGTGACTCATAAATTGTTACCAC  543

seq1  TGTTCTTCCTTATACATTCATTACTAACACTCTACATCTTCCACTTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTTATACATTCATTACTAACACTCTACATCTTCCACTTTTTA  593

seq1  TAACATTGAGTATATTCTTATATACTCAATGAAAGTACTGCAGAAAGTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGAGTATATTCTTATATACTCAATGAAAGTACTGCAGAAAGTAG  643

seq1  AAAGCAACCATGAAGTCTCACCTGTAATCCATAGGAAGTTAAATATCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACCATGAAGTCTCACCTGTAATCCATAGGAAGTTAAATATCTAA  693

seq1  GATTGATGAATACAGAGTCTTTATTTTTGTCCGGTAATGAAACTTAGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGAATACAGAGTCTTTATTTTTGTCCGGTAATGAAACTTAGGGA  743

seq1  GCACTTTGTATCTGATTCACACCATGAAAAATGGTCAAATAATGAAGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGTATCTGATTCACACCATGAAAAATGGTCAAATAATGAAGTTT  793

seq1  GTAGAATTTAAATTTTACAGATGTGTGTGTGTGTGTATGTGTGTGTA--T  845
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTAGAATTTAAATTTTACAGATGTGTGTGTGTGTGTATGTGTGTGTATGT  843

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCCTTTTATCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATCCTTTTATCAA  893

seq1  TTATATTTCCCATTAGACATGTAAGTTAATAAGACCTAGAATGTATTTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCCCATTAGACATGTAAGTTAATAAGACCTAGAATGTATTTAC  943

seq1  TATAAAGGACATTGATTTTCAGTGGATGAGACCATAATGAACTTTGTGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGACATTGATTTTCAGTGGATGAGACCATAATGAACTTTGTGAG  993

seq1  CAGAATCTTATGTCTATAAAGACAAATAGCCCTTTCAGAAAAGGCAGAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTTATGTCTATAAAGACAAATAGCCCTTTCAGAAAAGGCAGAGT  1043

seq1  GACTTTGCAATTATGAGCACAAGAGTGTTCTCACACTGTCTTCTATTTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCAATTATGAGCACAAGAGTGTTCTCACACTGTCTTCTATTTGT  1093

seq1  TTCATTGCTTCTAACACTGAAGAAAGCTGTGCTACCAAATACTTAATATC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTTCTAACACTGAAGAAAGCTGTGCTACCAAATACTTAATATC  1143

seq1  AAGCAGGGAGAACAGAGAATTC  1167
      ||||||||||||||||||||||
seq2  AAGCAGGGAGAACAGAGAATTC  1165