BAC Information

Click to search

BAC

Clone NameB6Ng01-348J03
Chromosome7 (Build37)
Map Location 24,424,571 - 24,425,381
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7
Downstream geneV1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J03.bB6Ng01-348J03.g
ACCGA129828GA129829
length824935
definitionB6Ng01-348J03.b B6Ng01-348J03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattaagcacatcagctcttttttatataatatttttattaggta
ttttcttcatttacatttccagtgctatcccaaaagtcccccataccctc
ccccaccactcccctacccacccactcccacttctttgccctggcgttcc
cctgtactgaggcatataaagtttgcaagaccaatgggcctctctttcca
atggtggccgactaggccatcttctgctacatatgcagctagagacagga
gctccagggggtactggttagttcatattgttgttccacctatagggttg
cagatccctttaactccttgggtactttctctagctcctccattgggggc
cctgtgatccatccaatagctgactgtgagcatccacttatgtgtttgcg
aggccacagcatagcctcacaagagacagctatatcagggtactttcagc
aaaatcttgctagtgtatgcaatggtgtcagtgtttggaggctgattatg
ggatggatccctgaatatggcagtctctagatgatccatccttttgtctc
agctccaaactttgtctctgtaacttcttccttgggtgttttgttcccaa
ttctaagaaggggcaaagtgtcaacactttggtcttcgttctttttgggt
tacatgtgtttcacaaattgtatctttatatcttggatattctaagtttc
tgggctgatatccactttatcagtgagtacatatcatgtgagttcttttg
tgattgggatacctcactcaggatgatgccctacaggtctcatccatttg
cctaggatttcataattcattctt
gaattcatgtgcaagaatgattagaaggtaaaattactaaaatacaatca
atttttatccaaacaatccatatctgcctcctgtattttcttctctacaa
gagccaatgctctctcacttacagataataattttcttggactatataag
cacttatcacctaaaaatgtttaaaattaattacttagctcttgagtagt
tatccttggtagttactttaactaagtaatatctcgccaaaatttttgag
aatttctaagagttcatacctggcctctcctgatttatatatatatatat
tgtgttttaaatctctccctacctattcagcatagtactcaaagtcctag
agagagcaattagacaacaaaagaaaatcaaggggatagaaattggaaag
gaagaagtcaaaatatcactatttgaaaatgatatgatagtgaccctaaa
aattccaccagtgaactcctaaacctgataaacagcttcagtgaagtaga
tggatataaacttaactcaaacaaatcaatgtcctttctctgcacaaagg
ataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtc
acaaaaattataaaataccttggtctaaggactcgaactaaggaagtgaa
agatctgtataataggaactccaagtatctgaagaaagaaatcaaacaag
atatcagaagatgaaaagatctcccatgctcatggattggcacgattaat
atagtcaaaatggctatcttgccgaaaacaatctacagattcaatgaaat
ccccatcaaaattccaactcaattcttcactgagttagaaagtttgtaaa
ttcaactggaataacaaaaacctaggacagcaaaaactattctcaacaat
aaaattatctctgggtggaatcaccatgcctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24424571_24425381
seq2: B6Ng01-348J03.g_67_877

seq1  GAATTCATGTGCAAGAATGATTAGAAGGTAAAATTACTAAAATACAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGCAAGAATGATTAGAAGGTAAAATTACTAAAATACAATCA  50

seq1  ATTTTTATCCAAACAATCCATATCTGCCTCCTGTATTTTCTTCTCTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCCAAACAATCCATATCTGCCTCCTGTATTTTCTTCTCTACAA  100

seq1  GAGCCAATGCTCTCTCACTTACAGATAATAATTTTCTTGGACTATATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGCTCTCTCACTTACAGATAATAATTTTCTTGGACTATATAAG  150

seq1  CACTTATCACCTAAAAATGTTTAAAATTAATTACTTAGCTCTTGAGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCACCTAAAAATGTTTAAAATTAATTACTTAGCTCTTGAGTAGT  200

seq1  TATCCTTGGTAGTTACTTTAACTAAGTAATATCTCGCCAAAATTTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGGTAGTTACTTTAACTAAGTAATATCTCGCCAAAATTTTTGAG  250

seq1  AATTTCTAAGAGTTCATACCTGGCCTCTCCTGATTTATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAGAGTTCATACCTGGCCTCTCCTGATTTATATATATATATAT  300

seq1  TGTGTTTTAAATCTCTCCCTACCTATTCAGCATAGTACTCAAAGTCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTAAATCTCTCCCTACCTATTCAGCATAGTACTCAAAGTCCTAG  350

seq1  AGAGAGCAATTAGACAACAAAAGAAAATCAAGGGGATAGAAATTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAATTAGACAACAAAAGAAAATCAAGGGGATAGAAATTGGAAAG  400

seq1  GAAGAAGTCAAAATATCACTATTTGAAAATGATATGATAGTGACCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTCAAAATATCACTATTTGAAAATGATATGATAGTGACCCTAAA  450

seq1  AATTCCACCAGTGAACTCCTAAACCTGATAAACAGCTTCAGTGAAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACCAGTGAACTCCTAAACCTGATAAACAGCTTCAGTGAAGTAGA  500

seq1  TGGATATAAACTTAACTCAAACAAATCAATGTCCTTTCTCTGCACAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATAAACTTAACTCAAACAAATCAATGTCCTTTCTCTGCACAAAGG  550

seq1  ATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTC  600

seq1  ACAAAAATTATAAAATACCTTGGTCTAAGGACTCGAACTAAGGAAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTATAAAATACCTTGGTCTAAGGACTCGAACTAAGGAAGTGAA  650

seq1  AGATCTGTATAATAGGAACTCCAAGTATCTGAAGAAAGAAATCAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTATAATAGGAACTCCAAGTATCTGAAGAAAGAAATCAAACAAG  700

seq1  ATATCAGAAGATGAAAAGATCTCCCATGCTCATGGATTGGCACGATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGAAGATGAAAAGATCTCCCATGCTCATGGATTGGCACGATTAAT  750

seq1  ATAGTCAAAATGGCTATCTTGCCGAAAACAATCTACAGATTCAATGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAAAATGGCTATCTTGCCGAAAACAATCTACAGATTCAATGAAAT  800

seq1  CCCCATCAAAA  811
      |||||||||||
seq2  CCCCATCAAAA  811