BAC Information

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BAC

Clone NameB6Ng01-349F16
Chromosome7 (Build37)
Map Location 71,380,722 - 71,381,867
singlet/doubletsinglet
Overlap geneTrpm1
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneBB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F16.bB6Ng01-349F16.g
ACCGA130373GA130374
length1,125489
definitionB6Ng01-349F16.b B6Ng01-349F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctataatgcgcccattgtcaagttctggttttacacagtaaggcc
ctccctgacgattgcccttggtcatgtggggaatactgagaactacaatg
ggatcaagaaaaacttctaaagtttcaaaaggtgtccaaaagttcattga
gctaaaatcaaaactaggaccagctgagagctttataattagatcacaat
acattgtcatacatattttatgtatgtaagggtattggctatccgaggcc
ccccatgatttcctgaagcaaaatagccatattctatatgctgaaaggat
ttttaaaatgcttttagtaatcaaaatttagggaagttttgtttggtttt
aagatagacaaaatggggggctggatagatggatcaatagttaaaagcac
tgtctgcccttctagagttcctgggttcaattcccagcatctacatggtg
actcacaactgtctgtaactgcagtccctgagcatccaccgatgccaggc
acatggtacttagacatacatacagccaaaacacccacagacagaatgat
ttttcaaataaatgtaagaaaatgtttttaaacatttttaaacattaaaa
tgactaatgaattaaagagcagagtcacagatcccttttccccactaact
tgacatggatattttctatcactttaatactgatcagcccgtaaagagaa
cagggttccttctgctcatggtactgatgtttcagtccctgtcagttggt
cctggtgttcttggacctgtggtaaggtggcgcaccatagctgggagtct
gtggcagagcagaaccacacttcccacagctgtggaacaaaggaaagtaa
acagaaggtgctcaatcccaatattgcctcagaaggcccgcccccactga
cctccttctgggccccagctcttaaaggctgcaccacaggctgggaacaa
agcatttaacacatgggccaatggagcatttcccatagaacaatagcagc
tgacccagatcataaacacactcagagtacggagactgtcttctcaagcc
ctcaccaacagatgtgctgaacagcagtcatttcaagctggtctgtctat
actcctttgaattgagctcactagt

tgggatactgctaggtgtgaccactgggggttctggataaaatatgattc
taagtattgggagctgccacttagcattcgaaagggaatgaggtagaggg
gtaagtggggttcacatgaaggaagaaaacagggtattctaccaaatttt
gcttagtgccctggaaataggggcagagatggaggcgaagccataagagg
tagtttgctagagacctggggatgagaggaggggatgggacttggagagg
agggagaatgaagatctgaagctcacttacctgcctcactggcctactgg
cttctgtagcaggcttggcggcaggatcccaggaatgcccgctggagttg
gtggttagggtaacaggatgcgtggggaggaaggctggaaaataactatg
tgatccactggagatgggagcaggaaagagtaagatgttatagtatgtgg
ttttctatacagttagggatgaggctggggttttgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71380722_71381867
seq2: B6Ng01-349F16.b_48_1172

seq1  GAATTCTATAATGCGCCCATTGTCAAGTTCTGGTTTTACACAGTAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATGCGCCCATTGTCAAGTTCTGGTTTTACACAGTAAGGCC  50

seq1  CTCCCTGACGATTGCCCTTGGTCATGTGGGGAATACTGAGAACTACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGACGATTGCCCTTGGTCATGTGGGGAATACTGAGAACTACAATG  100

seq1  GGATCAAGAAAAACTTCTAAAGTTTCAAAAGGTGTCCAAAAGTTCATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGAAAAACTTCTAAAGTTTCAAAAGGTGTCCAAAAGTTCATTGA  150

seq1  GCTAAAATCAAAACTAGGACCAGCTGAGAGCTTTATAATTAGATCACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATCAAAACTAGGACCAGCTGAGAGCTTTATAATTAGATCACAAT  200

seq1  ACATTGTCATACATATTTTATGTATGTAAGGGTATTGGCTATCCGAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCATACATATTTTATGTATGTAAGGGTATTGGCTATCCGAGGCC  250

seq1  CCCCATGATTTCCTGAAGCAAAATAGCCATATTCTATATGCTGAAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGATTTCCTGAAGCAAAATAGCCATATTCTATATGCTGAAAGGAT  300

seq1  TTTTAAAATGCTTTTAGTAATCAAAATTTAGGGAAGTTTTGTTTGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATGCTTTTAGTAATCAAAATTTAGGGAAGTTTTGTTTGGTTTT  350

seq1  AAGATAGACAAAATGGGGGGCTGGATAGATGGATCAATAGTTAAAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGACAAAATGGGGGGCTGGATAGATGGATCAATAGTTAAAAGCAC  400

seq1  TGTCTGCCCTTCTAGAGTTCCTGGGTTCAATTCCCAGCATCTACATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCCTTCTAGAGTTCCTGGGTTCAATTCCCAGCATCTACATGGTG  450

seq1  ACTCACAACTGTCTGTAACTGCAGTCCCTGAGCATCCACCGATGCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAACTGTCTGTAACTGCAGTCCCTGAGCATCCACCGATGCCAGGC  500

seq1  ACATGGTACTTAGACATACATACAGCCAAAACACCCACAGACAGAATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTACTTAGACATACATACAGCCAAAACACCCACAGACAGAATGAT  550

seq1  TTTTCAAATAAATGTAAGAAAATGTTTTTAAACATTTTTAAACATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATAAATGTAAGAAAATGTTTTTAAACATTTTTAAACATTAAAA  600

seq1  TGACTAATGAATTAAAGAGCAGAGTCACAGATCCCTTTTCCCCACTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATGAATTAAAGAGCAGAGTCACAGATCCCTTTTCCCCACTAACT  650

seq1  TGACATGGATATTTTCTATCACTTTAATACTGATCAGCCCGTAAAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGATATTTTCTATCACTTTAATACTGATCAGCCCGTAAAGAGAA  700

seq1  CAGGGTTCCTTCTGCTCATGGTACTGATGTTTCAGTCCCTGTCAGTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCCTTCTGCTCATGGTACTGATGTTTCAGTCCCTGTCAGTTGGT  750

seq1  CCTGGTGTTCTTGGACCTGTGGTAAGGTGGCGCACCATAGCTGGGAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTTCTTGGACCTGTGGTAAGGTGGCGCACCATAGCTGGGAGTCT  800

seq1  GTGGCAGAGCAGAACCACACTTCCCACAGCTGTGGAACAAAGGAAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGCAGAACCACACTTCCCACAGCTGTGGAACAAAGGAAAGTAA  850

seq1  ACAGAAGGTGCTCAATCCCAATATTGCCTCAGAAGGCCCGCCCCCACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTGCTCAATCCCAATATTGCCTCAGAAGGCCCGCCCCCACTGA  900

seq1  CCTCCTTCTGGGCCCCAGCTCTTAAAGGCTGCACCACAGGCTGGGAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTGGGCCCCAGCTCTTAAAGGCTGCACCACAGGCTGGGAACAA  950

seq1  AGCATTTAACACATGGGCCAATGGGAGCATTTCCAATAGAAACAATAGCA  1000
      |||||||||||||||||||||| ||||||||||| |||| ||||||||||
seq2  AGCATTTAACACATGGGCCAAT-GGAGCATTTCCCATAG-AACAATAGCA  998

seq1  AGGCTGAACCCAGATCATAAACACACTCAGAGTTAACGGAAGACTGTCTT  1050
        |||| ||||||||||||||||||||||||||  |||| ||||||||||
seq2  --GCTG-ACCCAGATCATAAACACACTCAGAGT--ACGG-AGACTGTCTT  1042

seq1  CTCCAAAGCCCTCACCAAACAGATGTGCTTGGAAACAGCAGGTCATTTTC  1100
      |||  ||||||||||| ||||||||||||    ||||||| |||||||  
seq2  CTC--AAGCCCTCACC-AACAGATGTGCT---GAACAGCA-GTCATTT--  1083

seq1  CAGGCTTGGGTCTGTCTATACTCCTTTGAAAATGAGGCTCACTAGT  1146
      || |||  |||||||||||||||||||| || ||| ||||||||||
seq2  CAAGCT--GGTCTGTCTATACTCCTTTG-AATTGA-GCTCACTAGT  1125


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