BAC Information

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BAC

Clone NameB6Ng01-349P20
Chromosome7 (Build37)
Map Location 24,036,141 - 24,037,249
singlet/doubletsinglet
Overlap geneLOC100043088
Upstream geneLOC100043625, LOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623
Downstream geneEG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349P20.bB6Ng01-349P20.g
ACCGA130806GA130807
length9421,138
definitionB6Ng01-349P20.b B6Ng01-349P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactaaatggctgagtagcacctgaataaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacagccctgagat
tccatctcacaccaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacaccccaccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtaccacaggaggatcccgcaatacctctcctgggc
atttagttcttaatttgtgttctctttactgtgtctctgtttagtttata
cttccatgatctgtccattgatgagagtggcgcgatgaatatgctaacct
taataaaaaaaacttaagcactaagcttgagatacttggttgtttccaca
tcggcctgaaatctcctcttagatgaataaatccaagaacatatttgcac
tgtgagggtatgttatgatgctgagtgtctggggaatcagttcatctgct
gacatcatcaccagcgacattggtctctcttttggtcatacaaccctgct
tgttaacatttctcatttctgagaagctgcttattcggactgttcttact
gatgctatacaaacctgctcaaactaggatgctccatcatcatcctctgc
cagcttgtcacttatatgatagaggatttcatgactaaaatatcccagat
gcgtaagttctcttccagctcacaacaaatatcttttgagagccaattgt
gcactactttccactgtggcttcatggaactaccttgtctagtatggcaa
aatattagcgaatgatatcacactccttttctcaactggggttagaacgg
atgaggaaaccgagatagctcctgacaggaaatcacgagggt
gaattcaattacacaattttattattagcaatcttacatgttattctgat
acacataatttttaatatgttgctataacataaggaaattcaattaatag
tttttatgctgcatttatatattgttttatttttaatgatttagttatat
cccaattgaagcctcccctccctcctaattgtattgaattctgatgatgg
gatcacatgttcaaattactctctttcctgtctgtattcatatgcaagaa
ccaatgtgtgttaaaattgtgttattgtgttcttgagctactggaccaat
aaatttttagttgcattacaaaatttatctcaaggccagagtaataaaat
caggataaaattttatttgagttattatatatacattgttttccaggcaa
tttacctgtagtgtgatagaatagtgtctcacttatcaagtgaagaaatt
gtgtcaaatcaattggtaagtgtggacaataaaacagagaccctagaaga
gtagtgtccgacctaatcatcactccagggtcctgtaaagccctctccat
gtctgttcatgataaatccgtgaaaaccactgaggaagtggctcttcagc
tcctcttgctttgccagtttggggttgggactgtggccaatgtctttctg
tttgtccataatttctctccagtcttgactggttataaacagagacccag
acaggtgattttaagccacatggctgtggccaatgccttgactctattcc
tcactatatttccaaacaacatgatgggcttttgctccccaaaactcctc
caaatgaactcaaatgtaaattagaatccttcagtcgcctggtggcaaga
agcacaaaacttgtgttccacctgtgtcctgagtatccatcagtttgtca
ctcttttttccctcttagtaagagggtaaacggtaaacttatactcagag
ccaagtgtccaaaatttgggcgaagtattccttgttacagttgttgggtt
tttcagtggtcttaagttaacattccacaatcccaagtgtagggtcactg
gttcacagataactgaaccaataacaactgactctaaaagcaacctttgt
ttctggtttccactctgggaattcaaatggaaggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24036141_24037249
seq2: B6Ng01-349P20.g_68_1205 (reverse)

seq1  AATGCCTACAA--TGAAT--CCAGAAGTGGAA--CAG-AACAA--GTTGC  41
      ||||||| | |  |||||  |||| |||||||  ||| |||||  |||||
seq2  AATGCCTTCCATTTGAATTCCCAG-AGTGGAAACCAGAAACAAAGGTTGC  49

seq1  TTTTAGAGTCAG-TGTTATTG--TCTGTTATCTGTGGACCAGTGACCCTA  88
      |||||||||||| ||||||||  || |||||||||| |||||||||||||
seq2  TTTTAGAGTCAGTTGTTATTGGTTCAGTTATCTGTGAACCAGTGACCCTA  99

seq1  ---ATTGGAATGTGG-ATGTT-ACTTAAGA-CACTGAAAAA-CCAACAAC  131
          | ||| ||||| ||||| |||||||| |||||||||| ||||||||
seq2  CACTTGGGATTGTGGAATGTTAACTTAAGACCACTGAAAAACCCAACAAC  149

seq1  TGTAACAA-GAATAACTCG-CCAAATTTTGGACACTT-GCTCTGAGTATA  178
      |||||||| |||||  ||| ||||||||||||||||| ||||||||||||
seq2  TGTAACAAGGAATACTTCGCCCAAATTTTGGACACTTGGCTCTGAGTATA  199

seq1  AGTTTACC-TTTA-CCTC-TACTAAGAGG--AAAAAGAGTGACAAACTGA  223
      |||||||| |||| |||| ||||||||||  |||||||||||||||||||
seq2  AGTTTACCGTTTACCCTCTTACTAAGAGGGAAAAAAGAGTGACAAACTGA  249

seq1  TGGATACTCAGGACACAGGTGGAACACAAG-TTTGTGCTTCTTGCCACCA  272
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGATACTCAGGACACAGGTGGAACACAAGTTTTGTGCTTCTTGCCACCA  299

seq1  GGCGACTGAAGGATTCTAATTTACATTTGAGTTCATTTGGAGGAGTTTT-  321
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCGACTGAAGGATTCTAATTTACATTTGAGTTCATTTGGAGGAGTTTTG  349

seq1  GGGAGCAAAAG-CCATCATGTTGTTTGGAAATATAGTGAGGAATAGAGTC  370
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAAAGCCCATCATGTTGTTTGGAAATATAGTGAGGAATAGAGTC  399

seq1  AAGGCATTGGCCACAGCCATGTGGCTTAAAATCACCTGTCTGGGTCTCTG  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTGGCCACAGCCATGTGGCTTAAAATCACCTGTCTGGGTCTCTG  449

seq1  TTTATAACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACAT  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACAT  499

seq1  TGGCCACAGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGCTGAAGAGCC  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGCTGAAGAGCC  549

seq1  ACTTCCTCAGTGGTTTTCACGGATTTATCATGAACAGACATGGAGAGGGC  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCAGTGGTTTTCACGGATTTATCATGAACAGACATGGAGAGGGC  599

seq1  TTTACAGGACCCTGGAGTGATGATTAGGTCGGACACTACTCTTCTAGGGT  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGACCCTGGAGTGATGATTAGGTCGGACACTACTCTTCTAGGGT  649

seq1  CTCTGTTTTATTGTCCACACTTACCAATTGATTTGACACAATTTCTTCAC  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTATTGTCCACACTTACCAATTGATTTGACACAATTTCTTCAC  699

seq1  TTGATAAGTGAGACACTATTCTATCACACTACAGGTAAATTGCCTGGAAA  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGTGAGACACTATTCTATCACACTACAGGTAAATTGCCTGGAAA  749

seq1  ACAATGTATATATAATAACTCAAATAAAATTTTATCCTGATTTTATTACT  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATATATAATAACTCAAATAAAATTTTATCCTGATTTTATTACT  799

seq1  CTGGCCTTGAGATAAATTTTGTAATGCAACTAAAAATTTATTGGTCCAGT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGAGATAAATTTTGTAATGCAACTAAAAATTTATTGGTCCAGT  849

seq1  AGCTCAAGAACACAATAACACAATTTTAACACACATTGGTTCTTGCATAT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGAACACAATAACACAATTTTAACACACATTGGTTCTTGCATAT  899

seq1  GAATACAGACAGGAAAGAGAGTAATTTGAACATGTGATCCCATCATCAGA  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGACAGGAAAGAGAGTAATTTGAACATGTGATCCCATCATCAGA  949

seq1  ATTCAATACAATTAGGAGGGAGGGGAGGCTTCAATTGGGATATAACTAAA  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATACAATTAGGAGGGAGGGGAGGCTTCAATTGGGATATAACTAAA  999

seq1  TCATTAAAAATAAAACAATATATAAATGCAGCATAAAAACTATTAATTGA  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAAATAAAACAATATATAAATGCAGCATAAAAACTATTAATTGA  1049

seq1  ATTTCCTTATGTTATAGCAACATATTAAAAATTATGTGTATCAGAATAAC  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTATGTTATAGCAACATATTAAAAATTATGTGTATCAGAATAAC  1099

seq1  ATGTAAGATTGCTAATAATAAAATTGTGTAATTGAATTC  1109
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGATTGCTAATAATAAAATTGTGTAATTGAATTC  1138