BAC Information

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BAC

Clone NameB6Ng01-350H03
Chromosome7 (Build37)
Map Location 32,690,408 - 32,691,518
singlet/doubletsinglet
Overlap genenone
Upstream geneMag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593
Downstream geneLOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350H03.bB6Ng01-350H03.g
ACCGA131111GA131112
length5001,097
definitionB6Ng01-350H03.b B6Ng01-350H03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacacaatatgtactcactgataagtggatattagccccaaacct
aggattcccaagatataaggtacaatttgctaaacacatgaaactcaaaa
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgcataccctagcaaggttttatcaaaag
gacccagatgtagctatctcttgtgagactatgacggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagaacccaaggagctaaagggatctgcaacccta
taggtggaacaacattatgaactaaccagtacctcggagctcttgactct

gaattccaaatatcacacattcacagaaactatttgcagctggtaaaatc
atgcccttgctaaagcacaaggcaaatcacagtgagttactgttaactgc
cagcaaagagcaataccctccataaataaataaataaatagggtaaaaat
gaattaaatttataaaccctaatccaaatccaattggaagttaagactca
atacaaaacaggagaaggaaacaggataacatcacagataatcaggaact
agcctgcctccatcttatgcttaaaagccatcttatagtgaagaaaaacc
atattcattcatgttaatgattcaacaaagctctgtatcttaagaattgc
actacgtcctacctgtaaccttaactacatgtggctccatacttcctgtt
ctaggactgacaatcatgtttttgtttaaaaagttgtttgaaatcatctt
gcaaccctatctttgtttcagaaagtttatatggctccttatgctaccac
ttctgactatgaacaccctgttactcacagcttgcagccatatctttgat
tcaagaggacattaggactaatttctttgtcctgctattttgcctgccat
attccttatctccaaattcccttcccatgggctgtataggtcctgtcttc
ttcatgtctaatattgacatatcaaaccccaacttagggagaggcagaat
gtatatataaataaatagctcagtttaattaattgcatgctttaattaat
atgaccatgatgatttgggtgggtattttttccttcccatcttttaaatt
aacaataccaacaatattagaaagatcataaagacactcttttaaaccca
atgtcatactagattggataatctaaagaaatagattttatgtataaaaa
ctacaaagactaacccaaggcaagatatgtacttatgactacatgtcact
tataacttcaatgtaacttaaactacatgcaagttatgactacagtgtat
cttagactacatgtactataacagaaatgagactgagcagtagtgcaaag
tttcccagtagatagcttggatcactgctgactctactatgctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_32690408_32691518
seq2: B6Ng01-350H03.g_65_1161 (reverse)

seq1  TTAAAGGCATAGTAGAAGTCAGCAGTGAACCCAGCTAATCTTACCTGGGA  50
      ||||| ||||||||| |||||||||||| || |||| ||||   ||||||
seq2  TTAAA-GCATAGTAG-AGTCAGCAGTGATCCAAGCT-ATCT--ACTGGGA  45

seq1  AACTTTGCACTACTGCTTCAGTCTCATTTCTGTTATAAGTTACATTGTAG  100
      |||||||||||||||| ||||||||||||||||||||   |||| |||||
seq2  AACTTTGCACTACTGC-TCAGTCTCATTTCTGTTATA--GTACA-TGTAG  91

seq1  TCTTAAGATACACTGTAGTCATAACTTGCATTGTAGTTTTAAGTTACATT  150
      || ||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TC-TAAGATACACTGTAGTCATAACTTGCA-TGTAG-TTTAAGTTACATT  138

seq1  GAAGTTATAAGTGACATTGTAGTCATAAGTTACATATCTTGCCTTGGGTT  200
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GAAGTTATAAGTGACA-TGTAGTCATAAG-TACATATCTTGCCTTGGGTT  186

seq1  AGTCTTTGTAGTTTTTATACATAAAATCTATTTCTTTAGATTATCCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTAGTTTTTATACATAAAATCTATTTCTTTAGATTATCCAATC  236

seq1  TAGTATGACATTGGGTTTAAAAGAGTGTCTTTATGATCTTTCTAATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGACATTGGGTTTAAAAGAGTGTCTTTATGATCTTTCTAATATTG  286

seq1  TTGGTATTGTTAATTTAAAAGATGGGAAGGAAAAAATACCCACCCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTGTTAATTTAAAAGATGGGAAGGAAAAAATACCCACCCAAATC  336

seq1  ATCATGGTCATATTAATTAAAGCATGCAATTAATTAAACTGAGCTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTCATATTAATTAAAGCATGCAATTAATTAAACTGAGCTATTTA  386

seq1  TTTATATATACATTCTGCCTCTCCCTAAGTTGGGGTTTGATATGTCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATACATTCTGCCTCTCCCTAAGTTGGGGTTTGATATGTCAATA  436

seq1  TTAGACATGAAGAAGACAGGACCTATACAGCCCATGGGAAGGGAATTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATGAAGAAGACAGGACCTATACAGCCCATGGGAAGGGAATTTGG  486

seq1  AGATAAGGAATATGGCAGGCAAAATAGCAGGACAAAGAAATTAGTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGAATATGGCAGGCAAAATAGCAGGACAAAGAAATTAGTCCTAA  536

seq1  TGTCCTCTTGAATCAAAGATATGGCTGCAAGCTGTGAGTAACAGGGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTGAATCAAAGATATGGCTGCAAGCTGTGAGTAACAGGGTGTT  586

seq1  CATAGTCAGAAGTGGTAGCATAAGGAGCCATATAAACTTTCTGAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAGAAGTGGTAGCATAAGGAGCCATATAAACTTTCTGAAACAAA  636

seq1  GATAGGGTTGCAAGATGATTTCAAACAACTTTTTAAACAAAAACATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGTTGCAAGATGATTTCAAACAACTTTTTAAACAAAAACATGATT  686

seq1  GTCAGTCCTAGAACAGGAAGTATGGAGCCACATGTAGTTAAGGTTACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCTAGAACAGGAAGTATGGAGCCACATGTAGTTAAGGTTACAGG  736

seq1  TAGGACGTAGTGCAATTCTTAAGATACAGAGCTTTGTTGAATCATTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGTAGTGCAATTCTTAAGATACAGAGCTTTGTTGAATCATTAACA  786

seq1  TGAATGAATATGGTTTTTCTTCACTATAAGATGGCTTTTAAGCATAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATATGGTTTTTCTTCACTATAAGATGGCTTTTAAGCATAAGAT  836

seq1  GGAGGCAGGCTAGTTCCTGATTATCTGTGATGTTATCCTGTTTCCTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGCTAGTTCCTGATTATCTGTGATGTTATCCTGTTTCCTTCTC  886

seq1  CTGTTTTGTATTGAGTCTTAACTTCCAATTGGATTTGGATTAGGGTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTATTGAGTCTTAACTTCCAATTGGATTTGGATTAGGGTTTAT  936

seq1  AAATTTAATTCATTTTTACCCTATTTATTTATTTATTTATGGAGGGTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTCATTTTTACCCTATTTATTTATTTATTTATGGAGGGTATT  986

seq1  GCTCTTTGCTGGCAGTTAACAGTAACTCACTGTGATTTGCCTTGTGCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGCTGGCAGTTAACAGTAACTCACTGTGATTTGCCTTGTGCTTT  1036

seq1  AGCAAGGGCATGATTTTACCAGCTGCAAATAGTTTCTGTGAATGTGTGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGCATGATTTTACCAGCTGCAAATAGTTTCTGTGAATGTGTGAT  1086

seq1  ATTTGGAATTC  1111
      |||||||||||
seq2  ATTTGGAATTC  1097