BAC Information

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BAC

Clone NameB6Ng01-350K06
Chromosome7 (Build37)
Map Location 78,409,812 - 78,529,843
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K06.bB6Ng01-350K06.g
ACCGA131252GA131253
length1,1021,093
definitionB6Ng01-350K06.b B6Ng01-350K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,409,812 - 78,410,909)(78,528,747 - 78,529,843)
sequence
gaattcaaggttgtgaaccagattccttggtcctccagtgtgctgactgt
ctccaagcagttatggtaactatctaccttctgccctccacggtggtgaa
gggaaatctcatttacaataatttcactgcaaatttttaaaaagtacaat
ttcttgatattatctaacagatatactggtattgatttgaaaacaaacgt
gtaaaagactcaatgttgatattctctaaccaggtctcagtatccatcct
accagtcttttaaacattattcacagcatggcattattcatttcttatag
gtatgcttattaaaaagcagctaaatagatgtatgtaaaggatgtgctaa
caatgaaaagggaaaaagaattttatacaacagtctatcgcttctcagac
ttatatacatcccgagacttgagccaaccatcctctgtgttttcccagtc
agaggcaagatcacacagcaaagttcaaggtaccttgtgttgctgcctct
tgaagccactgtatacaatcccatcacactgcatctctggaactgctgac
caggaggtgatgccaacgaacctgtctatgagatcacagagggatttaca
gaggctgaaggttttgtgggtaaataaatttaacagcacacaaatgaagt
aaagatctgatattttttttcccattggatatacagagacacccaagcgg
aagctggcttgaagaataagagactctatgaaaagactggaagtcacagg
aggtgtctaatactttgatatccatataaacacacatgcacacatatata
atagtgtatatatgcatgcttacacagagaggacctgcctggctggtcat
gagtgagacatttttcacaggcagcaagtgttcaataaaacctgtgtata
ccctccaaaattcaacctgcctgtgattttgcatagattatgtcaggcaa
tgttattagccaattgtgtagttaacctcaccgcgtaactttttattgag
acagtattattttgggtacttatatatcagaaagcttcttgtattcaaat
ttctgctaggctttagaaagagaaactgagtttttaatagcatgtttaca
gt

gaattcaaattcataatttgtcaggcagcagaggttcagtccatgcctca
ccctcttttttgaacaagttaggaagacaataaaatgtaaaactgcctct
gtcagtgtgtgtcctttgccaaggttccaaggttagggagcaaacagctg
ggctgccatataccttacagccttgaaaaccttgcctaaccgcatcaaac
aacaacagcaacaacaacaaacaacaaccccctcagccagagatcaggct
ccagagtctaaattcacagtggtggagagccttttatgtccaagaccagt
gtttacagagagcacccagccaggcacacaggagcaggcagacattctga
ggtgacacctttccctaaagccttgggtgctctgtacagagatagaatga
attgcttagcagttctacactgtgactggcaaggagaaccaggagagcca
gagagcccctctgtggctttctcttctgcttattttttctttttataata
cccagctaatatttgcattaggggaaaaggatgtgggcggaaaaaaaggg
ggactcaatgtgatatgaagcaaggtagatccacaaaagcaaagccagga
gtagcacaaaaaaaaaaaaaaaaaaaaaagacaaaacaaacaaacaaaca
aacaacccaaggacccagcctagctttggttggaagaaggcctacatcat
aggtttcaaagcatcttttccagattcgcaggcacagcccccttgatgaa
aactagttgctaaattcagggccctgttaggcctcagctaattagaaaaa
atgggcttttaaattttttttcttttcctttctttctttagcaccttttc
tttcaagcatttagtctcaggagggggatcctggctcttggctggctgtt
ttgaaaacacgccttttgaatgcctctccctaattcacgccttttgtttt
tgagccttttgtgtttgcagtttgaccatataacattatacatctggtgt
atagcttgtggggctttttttctccaggctctatgcattccctatagacc
ctcctgagctcatttggagcgatcgtgtaacataaatgggcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78409812_78410909
seq2: B6Ng01-350K06.b_46_1147

seq1  GAATTCAAGGTTGTGAACCAGATTCCTTGGTCCTCCAGTGTGCTGACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTGTGAACCAGATTCCTTGGTCCTCCAGTGTGCTGACTGT  50

seq1  CTCCAAGCAGTTATGGTAACTATCTACCTTCTGCCCTCCACGGTGGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCAGTTATGGTAACTATCTACCTTCTGCCCTCCACGGTGGTGAA  100

seq1  GGGAAATCTCATTTACAATAATTTCACTGCAAATTTTTAAAAAGTACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTCATTTACAATAATTTCACTGCAAATTTTTAAAAAGTACAAT  150

seq1  TTCTTGATATTATCTAACAGATATACTGGTATTGATTTGAAAACAAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATATTATCTAACAGATATACTGGTATTGATTTGAAAACAAACGT  200

seq1  GTAAAAGACTCAATGTTGATATTCTCTAACCAGGTCTCAGTATCCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGACTCAATGTTGATATTCTCTAACCAGGTCTCAGTATCCATCCT  250

seq1  ACCAGTCTTTTAAACATTATTCACAGCATGGCATTATTCATTTCTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTTTTAAACATTATTCACAGCATGGCATTATTCATTTCTTATAG  300

seq1  GTATGCTTATTAAAAAGCAGCTAAATAGATGTATGTAAAGGATGTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTATTAAAAAGCAGCTAAATAGATGTATGTAAAGGATGTGCTAA  350

seq1  CAATGAAAAGGGAAAAAGAATTTTATACAACAGTCTATCGCTTCTCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAGGGAAAAAGAATTTTATACAACAGTCTATCGCTTCTCAGAC  400

seq1  TTATATACATCCCGAGACTTGAGCCAACCATCCTCTGTGTTTTCCCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATCCCGAGACTTGAGCCAACCATCCTCTGTGTTTTCCCAGTC  450

seq1  AGAGGCAAGATCACACAGCAAAGTTCAAGGTACCTTGTGTTGCTGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGATCACACAGCAAAGTTCAAGGTACCTTGTGTTGCTGCCTCT  500

seq1  TGAAGCCACTGTATACAATCCCATCACACTGCATCTCTGGAACTGCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCACTGTATACAATCCCATCACACTGCATCTCTGGAACTGCTGAC  550

seq1  CAGGAGGTGATGCCAACGAACCTGTCTATGAGATCACAGAGGGATTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTGATGCCAACGAACCTGTCTATGAGATCACAGAGGGATTTACA  600

seq1  GAGGCTGAAGGTTTTGTGGGTAAATAAATTTAACAGCACACAAATGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAAGGTTTTGTGGGTAAATAAATTTAACAGCACACAAATGAAGT  650

seq1  AAAGATCTGATATTTTTTTTCCCATTGGATATACAGAGACACCCAAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTGATATTTTTTTTCCCATTGGATATACAGAGACACCCAAGCGG  700

seq1  AAGCTGGCTTGAAGAATAAGAGACTCTATGAAAAGACTGGAAGTCACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCTTGAAGAATAAGAGACTCTATGAAAAGACTGGAAGTCACAGG  750

seq1  AGGTGTCTAATACTTTGATATCCATATAAACACACATGCACACATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTAATACTTTGATATCCATATAAACACACATGCACACATATATA  800

seq1  ATAGTGTATATATGCATGCTTACACAGAGAGGACCTGCCTGGCTGGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTATATATGCATGCTTACACAGAGAGGACCTGCCTGGCTGGTCAT  850

seq1  GAGTGAGACATTTTTCACAGGCAGCAAGTGTTCAATAAAACCTGTGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGACATTTTTCACAGGCAGCAAGTGTTCAATAAAACCTGTGTATA  900

seq1  CCCTCCAAAATTCAACCTGCCTGTGATTTTGCATAGATTATGTCAGGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAATTCAACCTGCCTGTGATTTTGCATAGATTATGTCAGGCAA  950

seq1  TGTTATTAGCCAATTGTGTAGTTAACCTCA-CGCGTAAC-TTTTATTGAG  998
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGTTATTAGCCAATTGTGTAGTTAACCTCACCGCGTAACTTTTTATTGAG  1000

seq1  ACAGTATTATTT--GGTACTTATATATCAGAAAGCTCTTGGTATTCAAAT  1046
      ||||||||||||  ||||||||||||||||||||||  | ||||||||||
seq2  ACAGTATTATTTTGGGTACTTATATATCAGAAAGCTTCTTGTATTCAAAT  1050

seq1  TTCTGCTAGGCTTTAGAAAGGAGAAACTGGAGTTTT--ATAGCATGTTTA  1094
      ||||||||||||||||||| |||||||| |||||||  ||||||||||||
seq2  TTCTGCTAGGCTTTAGAAA-GAGAAACT-GAGTTTTTAATAGCATGTTTA  1098

seq1  CAGT  1098
      ||||
seq2  CAGT  1102


seq1: chr7_78528747_78529843
seq2: B6Ng01-350K06.g_66_1158 (reverse)

seq1  TCGCCCCTTTATGTTACACGATCGCTCAAATTGAAGCTCAGGAGGGTCCT  50
      |||||| |||||||||||||||||||| || || ||||||||||||| ||
seq2  TCGCCCATTTATGTTACACGATCGCTCCAAATG-AGCTCAGGAGGGT-CT  48

seq1  ATAGGGAATGCATAGGAACCCTGGGAGAAAAAAGCCCCAACAAGCTATAC  100
      |||||||||||||||  | ||| ||||||||||  ||| |||||||||||
seq2  ATAGGGAATGCATAG--AGCCT-GGAGAAAAAAAGCCCCACAAGCTATAC  95

seq1  ACCAGATGTATAATGTTATATGGTCAAACTGGCAAACAC-AAAGGCTCAA  149
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ACCAGATGTATAATGTTATATGGTCAAACT-GCAAACACAAAAGGCTCAA  144

seq1  AAACAAAAGGCGTGAATTAGGGAGAGGCATTC-AAAGGCGTGTTTTCAAA  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACAAAAGGCGTGAATTAGGGAGAGGCATTCAAAAGGCGTGTTTTCAAA  194

seq1  ACAGCCAGCCAAGAGCCAGGATCCCCCTCCTGAGACTAAATGCTTGAAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGCCAAGAGCCAGGATCCCCCTCCTGAGACTAAATGCTTGAAAG  244

seq1  AAAAGGTGCTAAAGAAAGAAAGGAAAAGAAAAAAAATTTAAAAGCCCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGCTAAAGAAAGAAAGGAAAAGAAAAAAAATTTAAAAGCCCATT  294

seq1  TTTTCTAATTAGCTGAGGCCTAACAGGGCCCTGAATTTAGCAACTAGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTAGCTGAGGCCTAACAGGGCCCTGAATTTAGCAACTAGTTT  344

seq1  TCATCAAGGGGGCTGTGCCTGCGAATCTGGAAAAGATGCTTTGAAACCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGGGGGCTGTGCCTGCGAATCTGGAAAAGATGCTTTGAAACCTA  394

seq1  TGATGTAGGCCTTCTTCCAACCAAAGCTAGGCTGGGTCCTTGGGTTGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAGGCCTTCTTCCAACCAAAGCTAGGCTGGGTCCTTGGGTTGTTT  444

seq1  GTTTGTTTGTTTGTTTTGTCTTTTTTTTTTTTTTTTTTTTTTGTGCTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTTGTCTTTTTTTTTTTTTTTTTTTTTTGTGCTACT  494

seq1  CCTGGCTTTGCTTTTGTGGATCTACCTTGCTTCATATCACATTGAGTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTGCTTTTGTGGATCTACCTTGCTTCATATCACATTGAGTCCC  544

seq1  CCTTTTTTTCCGCCCACATCCTTTTCCCCTAATGCAAATATTAGCTGGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTCCGCCCACATCCTTTTCCCCTAATGCAAATATTAGCTGGGT  594

seq1  ATTATAAAAAGAAAAAATAAGCAGAAGAGAAAGCCACAGAGGGGCTCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAAGAAAAAATAAGCAGAAGAGAAAGCCACAGAGGGGCTCTCT  644

seq1  GGCTCTCCTGGTTCTCCTTGCCAGTCACAGTGTAGAACTGCTAAGCAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTGGTTCTCCTTGCCAGTCACAGTGTAGAACTGCTAAGCAATT  694

seq1  CATTCTATCTCTGTACAGAGCACCCAAGGCTTTAGGGAAAGGTGTCACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATCTCTGTACAGAGCACCCAAGGCTTTAGGGAAAGGTGTCACCT  744

seq1  CAGAATGTCTGCCTGCTCCTGTGTGCCTGGCTGGGTGCTCTCTGTAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCTGCCTGCTCCTGTGTGCCTGGCTGGGTGCTCTCTGTAAACA  794

seq1  CTGGTCTTGGACATAAAAGGCTCTCCACCACTGTGAATTTAGACTCTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTGGACATAAAAGGCTCTCCACCACTGTGAATTTAGACTCTGGA  844

seq1  GCCTGATCTCTGGCTGAGGGGGTTGTTGTTTGTTGTTGTTGCTGTTGTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATCTCTGGCTGAGGGGGTTGTTGTTTGTTGTTGTTGCTGTTGTTG  894

seq1  TTTGATGCGGTTAGGCAAGGTTTTCAAGGCTGTAAGGTATATGGCAGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCGGTTAGGCAAGGTTTTCAAGGCTGTAAGGTATATGGCAGCCC  944

seq1  AGCTGTTTGCTCCCTAACCTTGGAACCTTGGCAAAGGACACACACTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGCTCCCTAACCTTGGAACCTTGGCAAAGGACACACACTGACA  994

seq1  GAGGCAGTTTTACATTTTATTGTCTTCCTAACTTGTTCAAAAAAGAGGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTTTACATTTTATTGTCTTCCTAACTTGTTCAAAAAAGAGGGT  1044

seq1  GAGGCATGGACTGAACCTCTGCTGCCTGACAAATTATGAATTTGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGGACTGAACCTCTGCTGCCTGACAAATTATGAATTTGAATTC  1093


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