BAC Information

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BAC

Clone NameB6Ng01-350M12
Chromosome7 (Build37)
Map Location 8,505,715 - 8,579,448
singlet/doubletdoublet
Overlap geneLOC100042703, LOC100041967, LOC100042724
Upstream geneVmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961
Downstream geneLOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350M12.bB6Ng01-350M12.g
ACCGA131356GA131357
length1,196986
definitionB6Ng01-350M12.b B6Ng01-350M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,578,253 - 8,579,448)(8,505,715 - 8,506,466)
sequence
gaattcttatcttcaacaatgcatttgtggacagatattatttgataagt
tgcctaagagcctaagaagttggattagctataaatagaatatgttgctc
taccagagaacctgagttcagatcacagtacccatgacagatatctcaca
agtaaatataaatttaatgacagtagtattatttgctcatatgtgcatgt
gtatatgtgttatccactccacacacttaagcaaataatgcaacaaaata
ttttatggaatttttgtatttaattttgttgtacgaattaatttttttac
gtctaatacaattttgtacactttaaatttgttttcaagtacagtatatg
ttaaaatgtatgacttcaaaagacaacttagtagattgcttggttttact
ccatgcatcatgggaataaactcaaactgtaagccttagcaacaaataat
ttaactgtttaactgtctcacaggcataatatgtcttttaagaattttaa
ttcattatgtagaaggaaaagcaaaatatttgaaaaggtaaccataaact
tattgcattttgccaaccctaaaaaattatcttaataatgggtgtagtat
gtaatatactgattatgagtctcatggtatattccaattcataggtcaac
tcttatcccctacatcctggattcttactacatctgcttttgaacatggc
cctcttaatatcgcatacttagcatttttttcacaaatttgaaaatactt
ttgtcttctaaattaatcttacagagaacatggattttgcacctagtagt
ctcatgatctaatccagtagattaaatataatattcagttcttcatgggc
tcttataagtccatggtgtgcataatcatatttaggatagatagattaat
gaaatatgactaaatcaatactaaaaaaaaatcctgactaaaatctaaat
gtacatgtagtttttataatagattatcttctttgggaaaatttttggtg
cagatttcctgcaaattgcagttatatttttctaaagtatttttctttgg
tgaaataataattaccatgattttcatgagtcacctatggtgggtcaagg
cacaggcattgtttgtagcttttacaagaattttgttagatattgtattc
taacagtagtatgatgagataatactttatatctgcagtgcctttt
gaattcactctgtagatcatgctggccataaactatgaaatctgcctgcc
tcttcttcccaaatgcctcggttaaaggcatgaaccatcactgcccagct
gcctttagcttaatacaagtatgacaagtaaagccttactaattaaaact
gcttttatattacagttgtttgttatattattagggttgaagattgaaat
atactcccatttttatggtgattttgtatttgtggattttttcaatttta
taaattggagatttcacttatttacatttcaaattttgtcccctttcact
atttcccttctgcaaatccactatgccatccccccttaccctgcttctat
gagggtgctcccctacccacatacccactcttgcttcagcacccaagcat
tcatctacactggggaatcaagccttcacaggaccaaaggactcccctcc
cattgatgacagatagggagctttaactacttcagtccttcccctaacac
ctccattggagtctctgtgcacagtccaatggttgactgtgagcatccac
atctgtattggtcaggatctggcagagcctcctaggagacagctgtatca
gtctcctgtccacaagcacttcttgccatccacaatagtgtctgagtttg
gtatctgcatttgtgatcgatcttcaggtggggcaggctgtgtatggcct
ttaattcagtctctgatcttctctttgtcccactatttccaatagatagg
aacaattctgagttaaaattttgtagatgtgtgggtggtcctatccctca
actgggagccatgactaacctctggctattgtctcgacagattctccttc
ctgattctgggatatttcagctaatatcatcgctgtacatcctgggatgc
ttcttgatttcctggcatctgggactttctggttgctacaaacagttccc
cggtccctagttgctacacacctctgttcaatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8578253_8579448
seq2: B6Ng01-350M12.b_45_1240 (reverse)

seq1  AAAAGGCAACTGCAGATATAAAGTATATTACTCATCAAATTTACTACTTG  50
      ||||||| |||||||||||||||||| |  |||||||    |||||||  
seq2  AAAAGGC-ACTGCAGATATAAAGTAT-TATCTCATCA----TACTACTGT  44

seq1  TAG-ATACAAATATCCTTAACAAAA-TCTTGTAAAAGCTAACAAAC-ATG  97
      ||| |||| ||||||  |||||||| ||||||||||||| |||||| |||
seq2  TAGAATAC-AATATC--TAACAAAATTCTTGTAAAAGCT-ACAAACAATG  90

seq1  CCTGGTGCCTTGACCCA-CATA-GTGACTCATTGAAAATTCATGGTAAAT  145
      ||| ||||||||||||| |||| |||||||| |||||| ||||||||| |
seq2  CCT-GTGCCTTGACCCACCATAGGTGACTCA-TGAAAA-TCATGGTAATT  137

seq1  TATATTTCA-CAAAG-AAAATACTTTAG-AAAATATAACTGCAATTTGCA  192
        ||||||| ||||| |||||||||||| |||||||||||||||||||||
seq2  ATTATTTCACCAAAGAAAAATACTTTAGAAAAATATAACTGCAATTTGCA  187

seq1  GGAATTCTGCAC--AAGATTTT-CCAAAG-AGATAATCTATTAT-AAAAC  237
      |||| |||||||  || ||||| |||||| |||||||||||||| |||||
seq2  GGAAATCTGCACCAAAAATTTTCCCAAAGAAGATAATCTATTATAAAAAC  237

seq1  TACATGTACATTTAGATTTTAGTCAGGATTTTTTTTTAGTATTGATTTAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTACATTTAGATTTTAGTCAGGATTTTTTTTTAGTATTGATTTAG  287

seq1  TCATATTTCATTAATCTATCTATCCTAAATATGATTATGCACACCATGGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTCATTAATCTATCTATCCTAAATATGATTATGCACACCATGGA  337

seq1  CTTATAAGAGCCCATGAAGAACTGAATATTATATTTAATCTACTGGATTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGAGCCCATGAAGAACTGAATATTATATTTAATCTACTGGATTA  387

seq1  GATCATGAGACTACTAGGTGCAAAATCCATGTTCTCTGTAAGATTAATTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAGACTACTAGGTGCAAAATCCATGTTCTCTGTAAGATTAATTT  437

seq1  AGAAGACAAAAGTATTTTCAAATTTGTGAAAAAAATGCTAAGTATGCGAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAAAGTATTTTCAAATTTGTGAAAAAAATGCTAAGTATGCGAT  487

seq1  ATTAAGAGGGCCATGTTCAAAAGCAGATGTAGTAAGAATCCAGGATGTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGGGCCATGTTCAAAAGCAGATGTAGTAAGAATCCAGGATGTAG  537

seq1  GGGATAAGAGTTGACCTATGAATTGGAATATACCATGAGACTCATAATCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGAGTTGACCTATGAATTGGAATATACCATGAGACTCATAATCA  587

seq1  GTATATTACATACTACACCCATTATTAAGATAATTTTTTAGGGTTGGCAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTACATACTACACCCATTATTAAGATAATTTTTTAGGGTTGGCAA  637

seq1  AATGCAATAAGTTTATGGTTACCTTTTCAAATATTTTGCTTTTCCTTCTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATAAGTTTATGGTTACCTTTTCAAATATTTTGCTTTTCCTTCTA  687

seq1  CATAATGAATTAAAATTCTTAAAAGACATATTATGCCTGTGAGACAGTTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAATTAAAATTCTTAAAAGACATATTATGCCTGTGAGACAGTTA  737

seq1  AACAGTTAAATTATTTGTTGCTAAGGCTTACAGTTTGAGTTTATTCCCAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAAATTATTTGTTGCTAAGGCTTACAGTTTGAGTTTATTCCCAT  787

seq1  GATGCATGGAGTAAAACCAAGCAATCTACTAAGTTGTCTTTTGAAGTCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGGAGTAAAACCAAGCAATCTACTAAGTTGTCTTTTGAAGTCAT  837

seq1  ACATTTTAACATATACTGTACTTGAAAACAAATTTAAAGTGTACAAAATT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAACATATACTGTACTTGAAAACAAATTTAAAGTGTACAAAATT  887

seq1  GTATTAGACGTAAAAAAATTAATTCGTACAACAAAATTAAATACAAAAAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGACGTAAAAAAATTAATTCGTACAACAAAATTAAATACAAAAAT  937

seq1  TCCATAAAATATTTTGTTGCATTATTTGCTTAAGTGTGTGGAGTGGATAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAATATTTTGTTGCATTATTTGCTTAAGTGTGTGGAGTGGATAA  987

seq1  CACATATACACATGCACATATGAGCAAATAATACTACTGTCATTAAATTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACACATGCACATATGAGCAAATAATACTACTGTCATTAAATTT  1037

seq1  ATATTTACTTGTGAGATATCTGTCATGGGTACTGTGATCTGAACTCAGGT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTGTGAGATATCTGTCATGGGTACTGTGATCTGAACTCAGGT  1087

seq1  TCTCTGGTAGAGCAACATATTCTATTTATAGCTAATCCAACTTCTTAGGC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTAGAGCAACATATTCTATTTATAGCTAATCCAACTTCTTAGGC  1137

seq1  TCTTAGGCAACTTATCAAATAATATCTGTCCACAAATGCATTGTTGAAGA  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCAACTTATCAAATAATATCTGTCCACAAATGCATTGTTGAAGA  1187

seq1  TAAGAATTC  1196
      |||||||||
seq2  TAAGAATTC  1196

seq1: chr7_8505715_8506466
seq2: B6Ng01-350M12.g_67_818

seq1  GAATTCACTCTGTAGATCATGCTGGCCATAAACTATGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCATGCTGGCCATAAACTATGAAATCTGCCTGCC  50

seq1  TCTTCTTCCCAAATGCCTCGGTTAAAGGCATGAACCATCACTGCCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCAAATGCCTCGGTTAAAGGCATGAACCATCACTGCCCAGCT  100

seq1  GCCTTTAGCTTAATACAAGTATGACAAGTAAAGCCTTACTAATTAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGCTTAATACAAGTATGACAAGTAAAGCCTTACTAATTAAAACT  150

seq1  GCTTTTATATTACAGTTGTTTGTTATATTATTAGGGTTGAAGATTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATATTACAGTTGTTTGTTATATTATTAGGGTTGAAGATTGAAAT  200

seq1  ATACTCCCATTTTTATGGTGATTTTGTATTTGTGGATTTTTTCAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCATTTTTATGGTGATTTTGTATTTGTGGATTTTTTCAATTTTA  250

seq1  TAAATTGGAGATTTCACTTATTTACATTTCAAATTTTGTCCCCTTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGAGATTTCACTTATTTACATTTCAAATTTTGTCCCCTTTCACT  300

seq1  ATTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCCTGCTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTCTGCAAATCCACTATGCCATCCCCCCTTACCCTGCTTCTAT  350

seq1  GAGGGTGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCTCCCCTACCCACATACCCACTCTTGCTTCAGCACCCAAGCAT  400

seq1  TCATCTACACTGGGGAATCAAGCCTTCACAGGACCAAAGGACTCCCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACACTGGGGAATCAAGCCTTCACAGGACCAAAGGACTCCCCTCC  450

seq1  CATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCTTCCCCTAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGACAGATAGGGAGCTTTAACTACTTCAGTCCTTCCCCTAACAC  500

seq1  CTCCATTGGAGTCTCTGTGCACAGTCCAATGGTTGACTGTGAGCATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGAGTCTCTGTGCACAGTCCAATGGTTGACTGTGAGCATCCAC  550

seq1  ATCTGTATTGGTCAGGATCTGGCAGAGCCTCCTAGGAGACAGCTGTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTGGTCAGGATCTGGCAGAGCCTCCTAGGAGACAGCTGTATCA  600

seq1  GTCTCCTGTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGTCCACAAGCACTTCTTGCCATCCACAATAGTGTCTGAGTTTG  650

seq1  GTATCTGCATTTGTGATCGATCTTCAGGTGGGGCAGGCTGTGTATGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGCATTTGTGATCGATCTTCAGGTGGGGCAGGCTGTGTATGGCCT  700

seq1  TTAATTCAGTCTCTGATCTTCTCTTTGTCCCACTATTTCCAATAGATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGTCTCTGATCTTCTCTTTGTCCCACTATTTCCAATAGATAGG  750

seq1  AA  752
      ||
seq2  AA  752