BAC Information

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BAC

Clone NameB6Ng01-350O01
Chromosome7 (Build37)5 (Build37)
Map Location 84,720,346 - 84,721,447113,310,563 - 113,311,081
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350O01.bB6Ng01-350O01.g
ACCGA131419GA131420
length1,083494
definitionB6Ng01-350O01.b B6Ng01-350O01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,720,346 - 84,721,447)(113,310,563 - 113,311,081)
sequence
gaattccagtcctgacttcctttggtgatgaacagcagtgtggaagtatc
agctgaataaaccctttcctcccagatgcttcttggtcatgatgttgtgc
aggaatagcaaccccgactaagacaggaaggaaatagaagttaacagatt
ttggctgtactctatgaatgaggtactgcactcagcaccctgggcataat
atttaatcctcggagctttgtaggagctggatgctgctccatttgaaaat
tgagtatctagtagaagcccacattagtccacagttgggaggtgaatgta
atctcctgtgctcttttcataaagtgtattaatcatattgttcattactg
agacaaaatccctgataaaagcaactgaagaaaggatggactgactctgc
ctcatgtattgagaggcatggtggtgggatcacgaggcagctggtgatgt
tttcacacgggcataggactcagagaggtgtatgcctgcagtccactggc
tctacatacttttttatttagtatggtaccccagcccatgggatggtgtt
gccaaccctagggattggctttcctgtgtctggatacctgaaagggatgc
tggaaatgaaagaggaggagggggcaagagaaggatgaagccaagacaaa
ggtttctgatcaaggttcaaagtttaatttttagcactgtttttatatag
ggaaagcccacagacccattctttgtttctgcttgattgagatgcaaaga
aagctcagcaggtggtcaactcctcaaagctcagtaggaaattgcaaatg
tggtaaagccaatctcaatctagtttggaaaaccattgggtgtttgttta
gccactcaaggctgggggaagggcacacatgtccagaatcctccttgcaa
aaagtcatcacaatacatccagagatctgtcattagttttttcttatttc
atcccatggggggtcagattagtcatcacatgtactcatggccattcagt
ctctctcccatatcagactgagcaccacacatcatttttcactgtcccct
gcttctcttctttctgctttcgatctccagttc

tctgtctagctctgtaccccatttttaaattggattatttggtttgttgg
agtctaacttcttgagttctttatatattttgaatattagccctctgtca
gatgtagggttactgaagatctttcccaatctttaggcagccgttttgtc
ctattgatagtatcctttgccttaaagaagctttgtagtttcatgaggtc
ccatttatcaattgttgatcttagagcctgagacattggtgttccgttca
ggaagttgttacctgtaccaattcattcaaggatacttcccacttccact
tttatgaggcttagtgtgtccagttttatgtagaggtgctttatccactt
ggatttgaggtttgtgcagggtgccaaatatggatctatttgcattcttc
tacaagcacacatcctgttagataagaatcatttgttgaagatgctttct
tttgtcctttgtatagttttggggttttgttgttgttgttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_84720346_84721447
seq2: B6Ng01-350O01.b_47_1129

seq1  GAATTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTGTGGAAGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTGTGGAAGTATC  50

seq1  AGCTGAATAAACCCTTTCCTCCCAGATGCTTCTTGGTCATGATGTTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACCCTTTCCTCCCAGATGCTTCTTGGTCATGATGTTGTGC  100

seq1  AGGAATAGCAACCCCGACTAAGACAGGAAGGAAATAGAAGTTAACAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGCAACCCCGACTAAGACAGGAAGGAAATAGAAGTTAACAGATT  150

seq1  TTGGCTGTACTCTATGAATGAGGTACTGCACTCAGCACCCTGGGCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTACTCTATGAATGAGGTACTGCACTCAGCACCCTGGGCATAAT  200

seq1  ATTTAATCCTCGGAGCTTTGTAGGAGCTGGATGCTGCTCCATTTGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCCTCGGAGCTTTGTAGGAGCTGGATGCTGCTCCATTTGAAAAT  250

seq1  TGAGTATCTAGTAGAAGCCCACATTAGTCCACAGTTGGGAGGTGAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCTAGTAGAAGCCCACATTAGTCCACAGTTGGGAGGTGAATGTA  300

seq1  ATCTCCTGTGCTCTTTTCATAAAGTGTATTAATCATATTGTTCATTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGTGCTCTTTTCATAAAGTGTATTAATCATATTGTTCATTACTG  350

seq1  AGACAAAATCCCTGATAAAAGCAACTGAAGAAAGGATGGACTGACTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATCCCTGATAAAAGCAACTGAAGAAAGGATGGACTGACTCTGC  400

seq1  CTCATGTATTGAGAGGCATGGTGGTGGGATCACGAGGCAGCTGGTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTATTGAGAGGCATGGTGGTGGGATCACGAGGCAGCTGGTGATGT  450

seq1  TTTCACACGGGCATAGGACTCAGAGAGGTGTATGCCTGCAGTCCACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACGGGCATAGGACTCAGAGAGGTGTATGCCTGCAGTCCACTGGC  500

seq1  TCTACATACTTTTTTATTTAGTATGGTACCCCAGCCCATGGGATGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATACTTTTTTATTTAGTATGGTACCCCAGCCCATGGGATGGTGTT  550

seq1  GCCAACCCTAGGGATTGGCTTTCCTGTGTCTGGATACCTGAAAGGGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCTAGGGATTGGCTTTCCTGTGTCTGGATACCTGAAAGGGATGC  600

seq1  TGGAAATGAAAGAGGAGGAGGGGGCAAGAGAAGGATGAAGCCAAGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGAAAGAGGAGGAGGGGGCAAGAGAAGGATGAAGCCAAGACAAA  650

seq1  GGTTTCTGATCAAGGTTCAAAGTTTAATTTTTAGCACTGTTTTTATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGATCAAGGTTCAAAGTTTAATTTTTAGCACTGTTTTTATATAG  700

seq1  GGAAAGCCCACAGACCCATTCTTTGTTTCTGCTTGATTGAGATGCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCACAGACCCATTCTTTGTTTCTGCTTGATTGAGATGCAAAGA  750

seq1  AAGCTCAGCAGGTGGTCAACTCCTCAAAGCTCAGGTAGGAAATTGCAAAT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGCTCAGCAGGTGGTCAACTCCTCAAAGCTCA-GTAGGAAATTGCAAAT  799

seq1  GTGGTAAAGCCAATCTCAATCTAGTTTGGAAAACCATTGGGTGTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAAGCCAATCTCAATCTAGTTTGGAAAACCATTGGGTGTTTGTTT  849

seq1  AGCCAACTCAAGGCTGGGGGAAGGGCACACATGTCCAAGAATCCTCCTTG  900
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCC-ACTCAAGGCTGGGGGAAGGGCACACATGTCC-AGAATCCTCCTTG  897

seq1  CAAAAAGTCATCACAAATACATCCAGAGATCTGTCAATTAGTTTTTTCTT  950
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  CAAAAAGTCATCAC-AATACATCCAGAGATCTGTC-ATTAGTTTTTTCTT  945

seq1  AATTTCATCCCATTGGGGGTCAGAATTAGTCATCACATGTACTCATTGGC  1000
       |||||||||||| ||||||||| ||||||||||||||||||||| ||||
seq2  -ATTTCATCCCATGGGGGGTCAG-ATTAGTCATCACATGTACTCA-TGGC  992

seq1  CATTCAGTCCTTCTCTCCCCATATCAGGACTGGAGCACACAC-CATCATT  1049
      |||||||||  ||||| ||||||||| |||| |||||| ||| ||||| |
seq2  CATTCAGTC--TCTCT-CCCATATCA-GACT-GAGCAC-CACACATCA-T  1035

seq1  TTTTCACCTGTCCCCCTGCTTCTCCTTCTTTTCTGCTTTCAGATCTTCAG  1099
      |||||| |||| ||||||||||| |||| ||||||||||| ||||| |||
seq2  TTTTCA-CTGT-CCCCTGCTTCT-CTTC-TTTCTGCTTTC-GATCTCCAG  1080

seq1  TTC  1102
      |||
seq2  TTC  1083


seq1: chr5_113310563_113311081
seq2: B6Ng01-350O01.g_271_566 (reverse)

seq1  CAACAACAACAACAACAAAACAACCACACTCTTCAGCTTTATATTGAAAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGGACAGCTGAAACCACCCTGAATATCAAAAGAACTGCTGGGGGGCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGCATCCCCAGTGTCAATCTGAACTTCAGAACTGGACTAATTAAAACAGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGCACTGACACAGAGACAGGCATGCTGATCAGTGGTCAATAGACTCAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAAAGACTTGGGCCTAAGTCCACACACCTATGGACACCTGAATTTTGA  250
                            || ||| |     ||| |         |
seq2  ----------------------CA-ACAAC----AACAAC--------AA  15

seq1  CACAGAGTCAAAAAATGAACGCTAGAAAATAGACAGTGTCTTCAATAAAT  300
      || | |  | |||| |  ||    || || ||| ||  ||||||| ||||
seq2  CA-AAACCCCAAAACTATACAAAGGACAAAAGAAAGCATCTTCAACAAAT  64

seq1  G---CTGGTCAAACAGGATGTCTGCATGCAGAAGAATGCAAATAGATCCA  347
      |   ||  || |||||||||| ||| || |||||||||||||||||||||
seq2  GATTCTTATCTAACAGGATGTGTGCTTGTAGAAGAATGCAAATAGATCCA  114

seq1  TACTTATCATCCCGTACAAAGCCCAACTCCAGATGGATCAAGGACCTCAA  397
      || ||  || || | ||||| | ||| ||||  ||||| ||| ||||| |
seq2  TATTTGGCACCCTGCACAAACCTCAAATCCAAGTGGATAAAGCACCTCTA  164

seq1  CATAAGGCT-GATACACTGAGTCTGACAGAAAGGAAAGTGGGGAATAATC  446
      |||||  || || ||||| || || | | ||  | ||||||| | ||  |
seq2  CATAAAACTGGACACACTAAGCCTCATAAAAGTGGAAGTGGGAAGTATCC  214

seq1  CTGAACCCATGGACACAGGAAA---------GAACAGAATACCATTAGCA  487
       ||||   || |  ||||| ||         |||| ||| |||| |  | 
seq2  TTGAATGAATTGGTACAGGTAACAACTTCCTGAACGGAACACCAATGTCT  264

seq1  TAGGCACTAAGATCAACAATTAATAAATGGGA  519
       |||| ||||||||||||||| ||||||||||
seq2  CAGGCTCTAAGATCAACAATTGATAAATGGGA  296


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