BAC Information

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BAC

Clone NameB6Ng01-350O09
Chromosome7 (Build37)
Map Location 57,125,631 - 57,236,582
singlet/doubletdoublet
Overlap geneSlc6a5, Nell1
Upstream geneE2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2, Prmt3
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350O09.bB6Ng01-350O09.g
ACCGA131435GA131436
length1,1561,121
definitionB6Ng01-350O09.b B6Ng01-350O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,125,631 - 57,126,783)(57,235,473 - 57,236,582)
sequence
gaattcatcagaaatgtgttgacaaatcagaggtgcaaaaaaatctgctt
ctcgctggtgttttctaggctgctcacagaaatctcccaggctttgtgtg
taatgctttattccaggttcagtgttaatggcacgtgtgtgcaaccttcc
tatctgtgctcaagaaataaaaaatgaaagacagaagctctcactgcagt
ctgggcctggcgctgcagttagctctgtgcatgctgatgtcagagcagtg
gcagcaatgagaatggagtcaggctgagcatcctagactctagggcacag
agcctgtcaaaacacaagacttggatgctcctctattttctggcatagga
gttttgttccttgtgggttgggaaaagtgaaagctgccagatatcacttg
ctagtatatttcatacattttaaaataaacctttcaggtgctagagagat
ggcacagcagttaagagcattcgactgcttttgcagaggaactggttggt
tacccagcacccacatggtggttcataagcatctgtaactccagatccag
gggatctgatgccctcttctaagctctgagggcgccaagcatctgcaagg
tatacatgcatatatgtaagcaaaacacacagaattaaaatgaaccaata
catttttattaaaaatttattttcatttacttggctttaaattttagttt
atcattgtacgtatgtacgtatacactcatagtgtatggggctcatatgc
tgtggcacacatgtgtggagatgagagcacagtttcacagaacccattct
cttctcccaccatttcatgggtgctggggattgaactcaggtctccaggt
ttgtacagcacctttacccactcaaccatcttgctagtcctatttactca
ggggtttttttggggttttttgacatgctcaaaatatagttctgggccag
tgtagaactgtctacataaaccagactggacttgcatgaccttctactct
acctctaccaaaaatatatattgtacatatatatacatatatataattta
ttttacatacacacataatatgcatatataattacgtatatatggattat
atctattgttttgtaggatgccataaattcattctgaaagacctggaaat
gagccc
gaattcatttatcagccctttggggatggggtcccatgtagcacatacta
gatatatgcatgtggtgcgcaccaaggacattctcatgatgttttcctcc
ctgagagagaagaaactaagtggatagtttggcaataaataccagaaagt
atcagaatagaaaaaaacttggaggggtagggggcctaactaggtcattt
tgagctagaaaatcaagatgagcagggccaggcccgaggaaaatcatgtc
cacatgtagataaccgtgggtgcaagccaggaacatcgtggagtgttcta
gaaacagaagagagatgggtagacttgcctgtagcagaatgggtttgagg
ggtagggagagctagctcaaaggcaggtgttctcctcttcctttccattg
ctgtggtaaaacagtattcacactccaccactgagggaagtcaaggcaga
aaccatgaaggaagctatttgctggttcactcactggcaccctggcagac
tcacgaataactagttttttgaaacagccggggacacctgcccagagaac
agtgctacctagagtgggctgggcactctgacatcaattaacagtaatga
ccatccttcacagaaaggcccacagagccacctgacagagaaaatgactc
agtacatctctgtcgtcaaggtctgtgagctggctcagagggtgaaggca
catgccaacaagcctgaccacctgagtctgatcctcgtcacccacatggt
ggaaagagagaaacaactcccccaagctgtcctctgacttccaaactttg
ggccatgaccagcatctccctataactctctttgcaggtggctctcttct
cggtagacagtgctaactagagactgtaagggcaggttataaaaggcctt
aggaactttgacaaggaccttggcttgtttatgctgtttctaatgggtga
tcgttggagtactgtgaaagtttgttgctcaaggaaggatgcctatattg
tgcctcttcatttattattttcaaattatggtttattctttagcattcac
ttgtgtgctattgctcacacctaacataccacttcggtcacggtgccctg
ctcctgagcaaagaaagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_57125631_57126783
seq2: B6Ng01-350O09.b_48_1203

seq1  GAATTCATCAGAAATGTGTTGACAAATCAGAGGTGCAAAAAAATCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAAATGTGTTGACAAATCAGAGGTGCAAAAAAATCTGCTT  50

seq1  CTCGCTGGTGTTTTCTAGGCTGCTCACAGAAATCTCCCAGGCTTTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGGTGTTTTCTAGGCTGCTCACAGAAATCTCCCAGGCTTTGTGTG  100

seq1  TAATGCTTTATTCCAGGTTCAGTGTTAATGGCACGTGTGTGCAACCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTATTCCAGGTTCAGTGTTAATGGCACGTGTGTGCAACCTTCC  150

seq1  TATCTGTGCTCAAGAAATAAAAAATGAAAGACAGAAGCTCTCACTGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGCTCAAGAAATAAAAAATGAAAGACAGAAGCTCTCACTGCAGT  200

seq1  CTGGGCCTGGCGCTGCAGTTAGCTCTGTGCATGCTGATGTCAGAGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGCGCTGCAGTTAGCTCTGTGCATGCTGATGTCAGAGCAGTG  250

seq1  GCAGCAATGAGAATGGAGTCAGGCTGAGCATCCTAGACTCTAGGGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATGAGAATGGAGTCAGGCTGAGCATCCTAGACTCTAGGGCACAG  300

seq1  AGCCTGTCAAAACACAAGACTTGGATGCTCCTCTATTTTCTGGCATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCAAAACACAAGACTTGGATGCTCCTCTATTTTCTGGCATAGGA  350

seq1  GTTTTGTTCCTTGTGGGTTGGGAAAAGTGAAAGCTGCCAGATATCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCCTTGTGGGTTGGGAAAAGTGAAAGCTGCCAGATATCACTTG  400

seq1  CTAGTATATTTCATACATTTTAAAATAAACCTTTCAGGTGCTAGAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATATTTCATACATTTTAAAATAAACCTTTCAGGTGCTAGAGAGAT  450

seq1  GGCACAGCAGTTAAGAGCATTCGACTGCTTTTGCAGAGGAACTGGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCAGTTAAGAGCATTCGACTGCTTTTGCAGAGGAACTGGTTGGT  500

seq1  TACCCAGCACCCACATGGTGGTTCATAAGCATCTGTAACTCCAGATCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCACCCACATGGTGGTTCATAAGCATCTGTAACTCCAGATCCAG  550

seq1  GGGATCTGATGCCCTCTTCTAAGCTCTGAGGGCGCCAAGCATCTGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTGATGCCCTCTTCTAAGCTCTGAGGGCGCCAAGCATCTGCAAGG  600

seq1  TATACATGCATATATGTAAGCAAAACACACAGAATTAAAATGAACCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCATATATGTAAGCAAAACACACAGAATTAAAATGAACCAATA  650

seq1  CATTTTTATTAAAAATTTATTTTCATTTACTTGGCTTTAAATTTTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTAAAAATTTATTTTCATTTACTTGGCTTTAAATTTTAGTTT  700

seq1  ATCATTGTACGTATGTACGTATACACTCATAGTGTATGGGGCTCATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTACGTATGTACGTATACACTCATAGTGTATGGGGCTCATATGC  750

seq1  TGTGGCACACATGTGTGGAGATGAGAGCACAGTTTCACAGAACCCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACACATGTGTGGAGATGAGAGCACAGTTTCACAGAACCCATTCT  800

seq1  CTTCTCCCACCATTTCATGGGTGCTGGGGATTGAACTCAGGTCTCCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCACCATTTCATGGGTGCTGGGGATTGAACTCAGGTCTCCAGGT  850

seq1  TTGTACAGCACCTTTACCCACTCAACCATCTTGCTAGTCCTATTTACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGCACCTTTACCCACTCAACCATCTTGCTAGTCCTATTTACTCA  900

seq1  GGGGTTTTTTTGGGGTTTTTTGACATGCTCAAAATATAGTTCT-GGCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGTTTTTTTGGGGTTTTTTGACATGCTCAAAATATAGTTCTGGGCCAG  950

seq1  TGTAGAACTGTCTACATAAACCAGACTGGACTTGCCATGACCTTCCTACT  999
      |||||||||||||||||||||||||||||||||| ||||||||| |||| 
seq2  TGTAGAACTGTCTACATAAACCAGACTGGACTTG-CATGACCTT-CTAC-  997

seq1  TCTACCTCTACCAAAAATATTATA-TGTACATATATATACATATATATAA  1048
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TCTACCTCTACCAAAAATA-TATATTGTACATATATATACATATATATAA  1046

seq1  ATTTATATACATACACACAT-ATATGCATATATA--TACATATATATGTA  1095
       ||  | ||||||||||||| |||||||||||||  ||| |||||||| |
seq2  TTTATTTTACATACACACATAATATGCATATATAATTACGTATATATGGA  1096

seq1  -TATATCTAATGTTTTGTAGGATGGCATTAA-TCATTCTGAAAGACTCTG  1143
       |||||||| |||||||||||||| ||| || ||||||||||||||   |
seq2  TTATATCTATTGTTTTGTAGGATGCCATAAATTCATTCTGAAAGACCTGG  1146

seq1  AGATGAGCCC  1153
      | ||||||||
seq2  AAATGAGCCC  1156

seq1: chr7_57235473_57236582
seq2: B6Ng01-350O09.g_71_1191 (reverse)

seq1  CCCACTTTTCTTTGCTCA-GAGCA-GGCACCGTGAACGGAGTTGGTATGT  48
      ||||| |||||||||||| ||||| |||||||||| || || ||||||||
seq2  CCCAC-TTTCTTTGCTCAGGAGCAGGGCACCGTGACCGAAG-TGGTATGT  48

seq1  --AGTGTGAGCAATAGCACACAGGTGAATGCTTAAAGATAGACCAT-ATT  95
         ||||||||||||||||||| ||||||||| ||  ||| ||||| |||
seq2  TAGGTGTGAGCAATAGCACACAAGTGAATGCTAAAGAATAAACCATAATT  98

seq1  TGAAA--TATAAATG-AGA-GCAC-ATATAGGCATCCTTTCCTTGAGC-A  139
      |||||   ||||||| ||| |||| |||||||||||| |||||||||| |
seq2  TGAAAATAATAAATGAAGAGGCACAATATAGGCATCC-TTCCTTGAGCAA  147

seq1  CAAAC-TTCACAGTACTCCAACGATCACCCATTAGAAACAGCATAA--AA  186
      ||||| ||||||||||||||||||||||||||||||||||||||||  ||
seq2  CAAACTTTCACAGTACTCCAACGATCACCCATTAGAAACAGCATAAACAA  197

seq1  GCCAAGGTCCTTGTCAAAGTTCCTAAGGCCTTTTATAACCTGCCCCTTAC  236
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAAGGTCCTTGTCAAAGTTCCTAAGGCCTTTTATAACCTG-CCCTTAC  246

seq1  AGTCTCTAGTTAGCACTGTCTACCGAGAAGAGAGCCACCTGCAAAGAGAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTAGTTAGCACTGTCTACCGAGAAGAGAGCCACCTGCAAAGAGAG  296

seq1  TTATAGGGAGATGCTGGTCATGGCCC-AAGTTTGGAAGTCAGAGGACAGC  335
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATAGGGAGATGCTGGTCATGGCCCAAAGTTTGGAAGTCAGAGGACAGC  346

seq1  TTGGGGGAGTTGTTTCTCTCTTTCCACCATGTGGGTGACGAGGATCAGAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGAGTTGTTTCTCTCTTTCCACCATGTGGGTGACGAGGATCAGAC  396

seq1  TCAGGTGGTCAGGCTTGTTGGCATGTGCCTTCACCCTCTGAGCCAGCTCA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGTCAGGCTTGTTGGCATGTGCCTTCACCCTCTGAGCCAGCTCA  446

seq1  CAGACCTTGACGACAGAGATGTACTGAGTCATTTTCTCTGTCAGGTGGCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGACGACAGAGATGTACTGAGTCATTTTCTCTGTCAGGTGGCT  496

seq1  CTGTGGGCCTTTCTGTGAAGGATGGTCATTACTGTTAATTGATGTCAGAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCTTTCTGTGAAGGATGGTCATTACTGTTAATTGATGTCAGAG  546

seq1  TGCCCAGCCCACTCTAGGTAGCACTGTTCTCTGGGCAGGTGTCCCCGGCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCCACTCTAGGTAGCACTGTTCTCTGGGCAGGTGTCCCCGGCT  596

seq1  GTTTCAAAAAACTAGTTATTCGTGAGTCTGCCAGGGTGCCAGTGAGTGAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAAAACTAGTTATTCGTGAGTCTGCCAGGGTGCCAGTGAGTGAA  646

seq1  CCAGCAAATAGCTTCCTTCATGGTTTCTGCCTTGACTTCCCTCAGTGGTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATAGCTTCCTTCATGGTTTCTGCCTTGACTTCCCTCAGTGGTG  696

seq1  GAGTGTGAATACTGTTTTACCACAGCAATGGAAAGGAAGAGGAGAACACC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAATACTGTTTTACCACAGCAATGGAAAGGAAGAGGAGAACACC  746

seq1  TGCCTTTGAGCTAGCTCTCCCTACCCCTCAAACCCATTCTGCTACAGGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGAGCTAGCTCTCCCTACCCCTCAAACCCATTCTGCTACAGGCA  796

seq1  AGTCTACCCATCTCTCTTCTGTTTCTAGAACACTCCACGATGTTCCTGGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCCATCTCTCTTCTGTTTCTAGAACACTCCACGATGTTCCTGGC  846

seq1  TTGCACCCACGGTTATCTACATGTGGACATGATTTTCCTCGGGCCTGGCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCACGGTTATCTACATGTGGACATGATTTTCCTCGGGCCTGGCC  896

seq1  CTGCTCATCTTGATTTTCTAGCTCAAAATGACCTAGTTAGGCCCCCTACC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATCTTGATTTTCTAGCTCAAAATGACCTAGTTAGGCCCCCTACC  946

seq1  CCTCCAAGTTTTTTTCTATTCTGATACTTTCTGGTATTTATTGCCAAACT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGTTTTTTTCTATTCTGATACTTTCTGGTATTTATTGCCAAACT  996

seq1  ATCCACTTAGTTTCTTCTCTCTCAGGGAGGAAAACATCATGAGAATGTCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTAGTTTCTTCTCTCTCAGGGAGGAAAACATCATGAGAATGTCC  1046

seq1  TTGGTGCGCACCACATGCATATATCTAGTATGTGCTACATGGGACCCCAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCGCACCACATGCATATATCTAGTATGTGCTACATGGGACCCCAT  1096

seq1  CCCCAAAGGGCTGATAAATGAATTC  1110
      |||||||||||||||||||||||||
seq2  CCCCAAAGGGCTGATAAATGAATTC  1121