BAC Information

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BAC

Clone NameMSMg01-045C07
Chromosome7 (Build37)
Map Location 34,919,314 - 34,919,595
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip
Downstream geneSae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C07.T7 (MSMg01no045_c07.b1)MSMg01-045C07.TJ (MSMg01no045_c07.g1)
ACCAG275848AG275849
length660693
length of high quality
(start - end)
285 (21 - 305)484 (75 - 558)
definitionCHROMAT_FILE: MSMg01no045_c07.b1 PHD_FILE: MSMg01no045_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:01 2005CHROMAT_FILE: MSMg01no045_c07.g1 PHD_FILE: MSMg01no045_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATATCGAGAGGACCGCGGAATTCCTTAGGTCCTAGGAGGTGCA
TGTGTGTGTGGGGAGGTTGGAGGGCGGGTTGGGGGGGATGGGCCAGACAC
TACAGTTTCCCTTCCATCTGGGAAGCAGGTGTCCCAGCTGGCTCTTTGCA
CAGTGAAGGCCAGGCTTCTGTGCATCTGGGTAGGTCAGTCTGCTGCCAAC
AAGCTCCCTTCCCCTGGTACTGGGGCATGTTACCATCCCCCTCTGAGAAA
AGGGAGTCTGGAAGTGAAGGGCTTTCCTTTAAAACTGTTTTCCTGATTAC
TGGGACACAATCACATGAGGTTTGGTTTTCTTTCCCATGACAGCTCTTGC
AGGGCAAGACAGATTTTTGTTTGTTTGTGGTTTTGGTGTAAAGATACATT
ATGACATTCTCACGTTCAACCTGCGTCCTTCTACCACCTTAACTAATACT
GACATAAGTAAATAACTGTATTTTCCAAGGTCTAAAGTATACAGATTCTA
AATTGACTATAAATACTGAGATACCCCTCATATCTAATTAAACAATCAAT
CCAATTTCTACATACACCATCACCACCCCCTCATACTCAACTTGGATCTC
TAAATACAGACAGTCATGCCCCGCTGACCATCATGACTTCTTTTGCTTCG
CTGCACATCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAAGAGCCAGAACTACTGTTGTAT
AACAACTTCCTCCAACATTGAACAACTTCCAGTCTGCAGGAAGTTCCTTA
AGCAGGAAGGTGAACAACTCAAAACAGCTTTAGGAAGTCCCTAAAACAGT
CAGTATGCCTAAGTAAGCAAGAAAAGCTGAGAGTTCAATGGCCGAGCTAC
CTGTATGCTGTAAGGTGTGTTCCAGGTTTCCCAGCTTTGTGGCAATGCTG
GGAGCTGGGCTGCGCCTTGGTGGTGCAGCTGTCTTTGAGTCAGTTTAGCT
CCTACAAGTAACTCCTACTCCTGTAAGTAACACCAATAAAACTCATGGGA
TCACCAAGTTGGATTTCCCATACTTTGGTCTGTCATATGTTCCCTATCTG
AGGTGAATAGACGTTGTGTGCTGCTTCTCCCCAGGAAAGGTTTTGTCACG
CACCAACTACATAGTGAGATTTCTGACTCATAAATAAATAAATAAATAAA
TAAATAAATAACTAACTAAATAAATAAATAAATAAATAACATCTCCAAGA
GACAGTTTGCATATCCATGTTCATAGCAGAACTGTTTTGGGGGGGGGTGC
TTTTGTTTTTTCCAAAAACGGTTTCCCTGTGTAGTTCTGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c07.b1 MSMg01no045_c07.b1 CHROMAT_FILE:
MSMg01no045_c07.b1 PHD_FILE: MSMg01no045_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:01 2005
         (285 letters)



>mm_chr7_34919111_34919795
          Length = 685

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttaggtcctaggaggtgcatgtgtgtgtggggaggttggagggcgggttggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggaattccttaggtcctaggaggtgcatgtgtgtgtggggaggttggagggcgggttggg 426

                                                                       
Query: 64  ggggatgggccagacactacagtttcccttccatctgggaagcaggtgtcccagctggct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggggatgggccagacactacagtttcccttccatctgggaagcaggtgtcccagctggct 366

                                                                       
Query: 124 ctttgcacagtgaaggccaggcttctgtgcatctgggtaggtcagtctgctgccaacaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctttgcacagtgaaggccaggcttctgtgcatctgggtaggtcagtctgctgccaacaag 306

                                                                       
Query: 184 ctcccttcccctggtactggggcatgttaccatccccctctgagaaaagggagtctggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcccttcccctggtactggggcatgttaccatccccctctgagaaaagggagtctggaa 246

                                                     
Query: 244 gtgaagggctttcctttaaaactgttttcctgattactggga 285
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtgaagggctttcctttaaaactgttttcctgattactggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)