BAC Information

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BAC

Clone NameMSMg01-046I22
Chromosome7 (Build37)
Map Location 133,495,141 - 133,495,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495
Downstream geneLat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046I22.T7 (MSMg01no046_i22.b1)MSMg01-046I22.TJ (MSMg01no046_i22.g1)
ACCAG276905AG276906
length689697
length of high quality
(start - end)		526 (67 - 592)481 (73 - 553)
definitionCHROMAT_FILE: MSMg01no046_i22.b1 PHD_FILE: MSMg01no046_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:44 2005CHROMAT_FILE: MSMg01no046_i22.g1 PHD_FILE: MSMg01no046_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTCCTATATTCAGAGCAGCGCGGAATTCACCTGCC
TCTTCACAAACACTCCAGGAACAGTGGGAGGACATGGATTATCCACAGCC
CTTGTTCCTTGTCTTATTTCCACTGCAGGATCTTAGATGTGTAGCCCAGC
CTCTGCCTCCTTCAGCAAATCCTACTGGCATGCACCACTACAACCAGCAC
CACTGCAGGATCTTACGCACAGTAAAACACATTTCGACACTGGTGGTGCA
CGCCTTTAATACCAACATTTGGAAAGCAGAGGCCAGTTGATCTTTGACTT
TGAGGCCAGCATGGTCTGCAGAGTGAGTTCCACGACAGCCAGGGCTACAC
AGAAAGACTGTGTCCCGAAAAACAAACAAGATAGATTTAGGGACTAGAGA
TTCCTCAATGGTTAGGAGTGTGTATTGCTTTTCTAGAGGACTTGAGTTTG
GTTCTTAGCACTTACATCAAGTGGTTCACAACTGCCTGTAAAACCAGCTC
CAGGGAGACCTAGTGCCTCTGAACTTCACCTGCCATTTCCACCCATATAC
ACAGAGTTAAAAGTAAACATTTTTAAAAGTTTATTTATGTGTATGAGGGC
TTTGCTTATGTGTGTGTAACGGCACTGTGTTTGTGCTTGATACCCACAGA
GGCTACAAGAGGGTGTTGAATCCCCTGTAGTTACAGGAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTTTTATTTGAGGTTGCTATGGGGCC
AGATTCAAAAGTACAATTCCAAGTACCTTTGCAATAATAAGTGGCCTTGA
CCTCAGCTGTGACCTCCCTGAAGGGAGATTCTGCATATTTCTCTAACAGG
CTATAAGCTGGAGGGAAGGGTGCCTGTTCGGCTCCCTCCCGCTTTTCTTT
CTTACAAGAACACAGACTCACATTGGCCGCTGAGATGGAGCTAAGAGCAT
GTGAAGCAGGAAAGCCAAAGGAATCTAGGTCCTCCATGCTGCCAAACCGA
CTCCCGCTCTCGAAACCGGGGCGCTCTCATACAGGGGACGCTGCAGCTTC
ATGTGCAGACTGTGACAGTTCTCTGAGCACTGTAGTGAAGCATTTCATTT
AACAAAAATCAGCACAATAGCTTCCAATACGGGGGAAAAAATACAGAATA
GAGAAAACAAAATACTTAACAAAACAAACTTCCAGCCGCTTCCCTCTGCT
GTGNTTTAATTTGGCCAGAAATGTAAAGTATTATTTTGTTTCTGCGACTG
TAGTGAGATCTCTTGCCTTCATTCACATTTGATGGAAAGGCCGGGGTGTA
GCTTGTACAAGAGCAAATGCCTAGCAAGTGAGAAAACCCGGTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_i22.g1 MSMg01no046_i22.g1 CHROMAT_FILE:
MSMg01no046_i22.g1 PHD_FILE: MSMg01no046_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:44 2005
         (481 letters)



>mm_chr7_133494961_133495849
          Length = 889

 Score =  826 bits (427), Expect = 0.0
 Identities = 476/509 (93%), Gaps = 28/509 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttttatttgaggttgctatggggccagattcaaaagtacaattccaagtacctttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtttttatttgaggttgctatggggccagattcaaaagtacaattccaagtacctttgc 240

                                                                       
Query: 61  aataataagtggccttgacctcagctgtgacctccctgaagggagattctgcatatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aataataagtggccttgacctcagctgtgacctccctgaagggagattctgcatatttct 300

                                                                       
Query: 121 ctaacaggctataagctggagggaagggtgcctgttcggctccctcccgcttttctttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 301 ctaacaggctataagctggagggaagggtgcctgttcggctccctcccccttttctttct 360

                                                                       
Query: 181 tacaagaacacagactcacattggccgctgagatggagctaagagcatgtgaagcaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tacaagaacacagactcacattggccgctgagatggagctaagagcatgtgaagcaggaa 420

                                                                       
Query: 241 agccaaaggaatctaggtcctccatgctgccaaaccgactcccgctctcgaaaccggggc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 421 agccaaaggaatctaggtcctccgtgctgccaaaccgactcccgctctcgaaaccagggc 480

                                                                       
Query: 301 gctc--------------------tcatacaggggacgctgcagcttcatgtgcagactg 340
           ||||                    ||||||||||||| ||||||||||||||||||||||
Sbjct: 481 gctcctatgccaaaggctcatcactcatacaggggactctgcagcttcatgtgcagactg 540

                                                                       
Query: 341 tgacagttctctgagcactgtagtgaagcatttcatttaacaaaaatcagcacaatagct 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgacagttctctgagcactgtagtgaagcatttcatttaacaaaaatcagcacaatagct 600

                                                                       
Query: 401 tccaatacggggg-aaaaaatacagaatagagaaaacaaaatacttaa-------caaaa 452
           ||||||||||||| ||||||||||||| ||||||||||||||||||||       |||||
Sbjct: 601 tccaatacggggggaaaaaatacagaaaagagaaaacaaaatacttaaaccaaaacaaaa 660

                                        
Query: 453 caaacttccagccgcttccctctgctgtg 481
           |||||||||||||||||||||||||||||
Sbjct: 661 caaacttccagccgcttccctctgctgtg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 889
Length adjustment: 10
Effective length of query: 471
Effective length of database: 879
Effective search space:   414009
Effective search space used:   414009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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