Query= MSMg01no047_j17.b1 MSMg01no047_j17.b1 CHROMAT_FILE:
MSMg01no047_j17.b1 PHD_FILE: MSMg01no047_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:58 2005
(647 letters)
>mm_chr7_24141449_24142495
Length = 1047
Score = 723 bits (374), Expect = 0.0
Identities = 391/402 (97%), Gaps = 9/402 (2%)
Strand = Plus / Minus
Query: 5 gaattcatttctaacttg---------aatattttatggtgtcccttccccaaacaccaa 55
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 gaattcatttctaacttgaattttaaaaatattttatggtgtcccttccccaaacaccaa 343
Query: 56 tcacctaacatagcccctcagtgacaggtggggtttcatgataagatatgcttactggta 115
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 342 tcacctaacgtagcccctcagtgagaggtggggtttcatgataagatatgcttactggta 283
Query: 116 tagcattggcaggattattattggtgtgatcatcttattattgaattactagcattttgg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tagcattggcaggattattattggtgtgatcatcttattattgaattactagcattttgg 223
Query: 176 gtgtgtgtgtataagtaggcagaggccagaggccaacctcaggtattgccagggcactct 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtgtgtgtgtataagtaggcagaggccagaggccaacctcaggtattgccagggcactct 163
Query: 236 ggtggagtcagcttgtgaggcagaaatgccaaaaagctgctcatgagaaatgaatttcta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggtggagtcagcttgtgaggcagaaatgccaaaaagctgctcatgagaaatgaatttcta 103
Query: 296 ggactctcctcctggatgtctggcgaaagtcagctctccagtttgggtcagtttgacagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ggactctcctcctggatgtctggcgaaagtcagctctccagtttgggtcagtttgacagg 43
Query: 356 cgaaaagcctggaagctgtttcatgaggataagagttccatg 397
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 cgaaaagcctggaagctgtttcatgaggataagagttccatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_j17.g1 MSMg01no047_j17.g1 CHROMAT_FILE:
MSMg01no047_j17.g1 PHD_FILE: MSMg01no047_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:58 2005
(628 letters)
>mm_chr7_6043374_6044401
Length = 1028
Score = 659 bits (341), Expect = 0.0
Identities = 564/659 (85%), Gaps = 52/659 (7%)
Strand = Plus / Plus
Query: 5 tacctttgactctagatgggacctggccagctatttgaagtttctgcccccttgacttt- 63
|||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct: 183 tacctttgcctctagatgtgatgtggccagctatttgaagtttctgcccccttga-tttc 241
Query: 64 acacaatgaaagagtgcagtctgcaatagtgagctaaattggaatctctctcccc--aaa 121
|||||||||||||||||||||||||||||||||||||||| || | |||||||| |||
Sbjct: 242 acacaatgaaagagtgcagtctgcaatagtgagctaaattagag-c-ctctccccgaaaa 299
Query: 122 attgatttttataaggatatttttatc-----acaacagaaatgaaactaaaccacatag 176
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 300 attgatttttataaggatattttt-tctcacaacaacagaaataaaactaaaccacatag 358
Query: 177 actttatttt-aaaatatattttcatactgtttattatacaagacaacattgctatggtt 235
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 359 acattatttttaaaatatattttcatactgtttattatacaagacaacattgatatgg-- 416
Query: 236 ttctat----atg--acaataatcatgtaactat-----------------cattgctaa 272
|| ||| ||||||| ||||| ||||| |||||||||
Sbjct: 417 ----atgcccatgttacaataaccatgtcactataagaagcatcattgaggcattgctaa 472
Query: 273 tataaaggatttagattagattcaggtaagttcttcagaacattagcactgtcaatgaat 332
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 473 tataaaggattcagattagattcaggtaagttcttcagaacattagcattgtcagggaat 532
Query: 333 ttactcagtttcaatgctagatataatgtgaaatcagatgaagggaaatatgtttcacta 392
| |||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||
Sbjct: 533 t-actcagtttcaatgctagatctagtgtgaagtcagatgaagggaaatatgttccactg 591
Query: 393 agccagg-gtttcctcat-tatgcttgaatattttgtcactgatactctaaaa--ttgtg 448
||||||| || | |||| | ||||||| ||||||||||||| |||| || || ||||
Sbjct: 592 agccaggagtg-cgtcatct-tgcttgactattttgtcactgctact-tacaaggttgta 648
Query: 449 gaactgttctctttcccctcttacatgcctttctatccctgtgacaggttagccaaatgt 508
|||||||| | ||||||| ||||||||||||||| |||||| || ||||||| ||| ||
Sbjct: 649 gaactgttgtatttccccccttacatgcctttctttccctgagataggttagtcaactgc 708
Query: 509 tccctcagtgaggaatgttggcactacctttcagaagttcttaggcggaacaaaac-ctt 567
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct: 709 tccctcagtgagcaatgttgggactacctttcggaagttcttaggcggaacaaaacact- 767
Query: 568 gacccacctagatatcagcttcaatgacctaaaggacgaagggctgaaggttctctgtg 626
|| ||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct: 768 gaaccacctagacatcagctccaatgacctgaaggatgaagggctgaaggttctctgtg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
