Query= MSMg01no047_k03.b1 MSMg01no047_k03.b1 CHROMAT_FILE:
MSMg01no047_k03.b1 PHD_FILE: MSMg01no047_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:00 2005
(413 letters)
>mm_chr7_139268300_139269112
Length = 813
Score = 636 bits (329), Expect = 0.0
Identities = 374/409 (91%), Gaps = 32/409 (7%)
Strand = Plus / Minus
Query: 5 gaattcaggtgtcattaggaaaaggtacagggcaccttgtgtgagtaccatgaagtaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattcaggtgtcattaggaaaaggtacagggcaccttgtgtgagtaccatgaagtaatt 386
Query: 65 atttctgttaggttatttttggtgaccatttgaaacacagagatggatgaactgtgaact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttctgttaggttatttttggtgaccatttgaaacacagagatggatgaactgtgaact 326
Query: 125 ctgggtagttttaggtatggacatagcaggattctggtttctacctgacaaatacatagg 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ctgggtagttttaggtatggacatagcagggttctggtttctacctgacaaatacatagg 266
Query: 185 ctcatttttaaaaggcaaatttatctttaaaaagtttttaaatataaatctatacacagg 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ctcatttttaaaaggcaaatttatctttaaaaggtttttaaatataaatctatacacagg 206
Query: 245 catagatagatagatagatagatagatagatagatagatagatagatagatagatagata 304
||| | ||||||||||||||||||||||||
Sbjct: 205 cat---t-----------------------------gatagatagatagatagatagata 178
Query: 305 gaaaatagacatgtatgaaaaggagggttgtacataccccagtaggcacagtcttctgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaaaatagacatgtatgaaaaggagggttgtacataccccagtaggcacagtcttctgaa 118
Query: 365 ttttaatgtcttaacaatagctatttatgtaattttggtggcttctggt 413
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttttaatgttttaacaatagctatttatgtaattttggtggcttctggt 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_k03.g1 MSMg01no047_k03.g1 CHROMAT_FILE:
MSMg01no047_k03.g1 PHD_FILE: MSMg01no047_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:00 2005
(627 letters)
>mm_chr7_139265351_139266377
Length = 1027
Score = 1096 bits (567), Expect = 0.0
Identities = 610/633 (96%), Gaps = 17/633 (2%)
Strand = Plus / Plus
Query: 1 tctccaagaatctcaagctaggaaagggacaaggtggaagccctgtgatggccagaggag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tctccaagaatctcaagctaggaaaggaacaaggtggaagccctgtgatggccagaggag 260
Query: 61 gcactctcctcccaagaggagcacccagttcagagcacctcgcaccagagactggatttt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gcactctcctcccaagaggagcacccagttcagagcaccttgcaccagagactggatttt 320
Query: 121 agacaatgatgcaccatgaccataaatgttcaaagttatgcataagttatgtataagtcc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agacaatgatgcaccatgaccataaatgttca-----------aagttatgtataagtcc 369
Query: 181 tgccctctatttaaacctaaacctcaagtcaggacccataagatgggcttgggggttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgccctctatttaaacctaaacctcaagtcaggacccataagatgggcttgggggttcac 429
Query: 241 tgcacctcactg-tttttttccaggagaccacact---t--cctctctctgtgttgtact 294
|||||||||||| |||||||||||||||||||||| | |||||||||| ||| ||||
Sbjct: 430 tgcacctcactgttttttttccaggagaccacactagatcgcctctctctgcgttatact 489
Query: 295 gtgccttgtctctttaacaggagcaatgagcatgggtttctaagtctagctcataagggc 354
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 490 gtgccttgtctctttaacaggagcaataagcatgggtttctaagtctagctcataagggc 549
Query: 355 tatcagggcccaggttctgatcctaattactctaatgacatcagagcttgtaggaatgtc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatcagggcccaggttctgatcctaattactctaatgacatcagagcttgtaggaatgtc 609
Query: 415 tctttcttctggggtcacatagatggcaagaactggagtgctagtgacaacctgttagtc 474
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 610 tctttcttctggggtcacatagatggcaagaactggagtgctggtgacaacctgttagtc 669
Query: 475 tgcaagaggctccaagactttcctgaccacagcaagaaggccctgagatattagctgcac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgcaagaggctccaagactttcctgaccacagcaagaaggccctgagatattagctgcac 729
Query: 535 ccctgcctaaagcccatcacacccacccctgcaattttcatttgtcagccaagtttttct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccctgcctaaagcccatcacacccacccctgcaattttcatttgtcagccaagtttttct 789
Query: 595 tcttacgtgaatctgagtaagacttccggcatt 627
|||||||||||||||||||||||||||||||||
Sbjct: 790 tcttacgtgaatctgagtaagacttccggcatt 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
