BAC Information

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BAC

Clone NameMSMg01-047L14
Chromosome7 (Build37)
Map Location 68,360,927 - 68,361,160
singlet/doubletsinglet
Overlap geneD0Kist2
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, LOC100041248
Downstream geneLOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047L14.T7 (MSMg01no047_l14.b1)MSMg01-047L14.TJ (MSMg01no047_l14.g1)
ACCAG277690AG277691
length706698
length of high quality
(start - end)
489 (46 - 534)607 (77 - 683)
definitionCHROMAT_FILE: MSMg01no047_l14.b1 PHD_FILE: MSMg01no047_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005CHROMAT_FILE: MSMg01no047_l14.g1 PHD_FILE: MSMg01no047_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTATTGATCTATATAATTTTAAAAGTGTTCATTTATGAAATAA
AAGAAATACATGATAAAATTTCTTGCGCTAATATATGTGTGCTTTTAAAC
TGCCACATAAAACATATGCACACAAGAAGGCATTCTTATGTTAAAGCTAG
AGTGGTCTAAGTGTGAGTTTACAATTTAGTTAATTCACTTACCAAAAGAA
AATAAAAATGAGTGTTATAAGTTATCCTTTGTTGGGAGCCGCGCCCACAT
TCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAAT
AATCTGCGCATGTGCCAAGGGTATTTTGTGACTACTTGTACTCTGCCTTC
CCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACAC
GTCCGAGGCGAAGGATAATTCTCCTTAATAGGGAAGGGGTTTCGTTTTCT
CTCTCTCTTGCTTCTTGCACTCTGGCTCCTGACGATGTAAGCAATATAGT
TTTGCCGCATAATATTTTGGTTTGTTGCCCCTTTTTCTGTTTTTCTTTCC
CTTTATACTTTAAACATACCCCTCTTTTTTTTTTTTTTCCCACCCCTTCT
TCTTACCCATTTCTCTTTCCTTCCTTATTATTTTTAACTCCTCCTTCTTT
TATCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCACTGAACCCCATTT
TTAATAGGGCAATTTGATAGTAAGCAGTCTAATTTCTTGTGTTCTTTGTA
CAAATTGGATATTATCCCGTTATCGGATGTAGGAATGGTAAAGATCTCTT
TGGAATCTGTCTGTGGCTGTTTTGTCCTATTGACAGTGTTTATTACTTTA
AAGAAGTTTTGAAGTTTTATAAGGTCCCATTTATGAAACCTTAATGTTAG
AGAAGTAGCCATAGGTGTTCTATTCAGAATATTTCTCATGTGCCCATTTA
TTCGACGCTCTTCCCTGCTTTCTATTCTATTACTTTAATCTAGTTTTATG
TGGAGGTCCTTGATCCATTTGGAATTGAGCTTTGTACAGGGAGATAAGAA
GGGATGGATTTGCATTCTTCTACATGCTGACTGCCAATCGAACCAGCAAC
ATTTTTTGAAAATGATGTTTTTTTTTTCTCTCCACTGAAGAGAGAGAAAG
GTTTTAGCACCTTTGTCAAAGATCAAATGACTATAAGTGTGTAGGTTCAT
TTCTGGATTTTCAGTTCTATTCCATTGATCTTTCTGCCTGTCTCTGTACC
AAAGCCATGCAGTTTTAATCAATATTGCTCTGTAGTTAAGGTTGAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_l14.b1 MSMg01no047_l14.b1 CHROMAT_FILE:
MSMg01no047_l14.b1 PHD_FILE: MSMg01no047_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
         (489 letters)



>mm_chr7_68360724_68361614
          Length = 891

 Score =  433 bits (224), Expect = e-125
 Identities = 231/234 (98%), Gaps = 2/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctactattgatctatataattttaaaag--tgttcatttatgaaataaaagaaa 61
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 204 ggaattctactattgatctatataattttaaaagagtgttcatttatgaaataaaagaaa 263

                                                                       
Query: 62  tacatgataaaatttcttgcgctaatatatgtgtgcttttaaactgccacataaaacata 121
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacatgataaaatttcttgtgctaatatatgtgtgcttttaaactgccacataaaacata 323

                                                                       
Query: 122 tgcacacaagaaggcattcttatgttaaagctagagtggtctaagtgtgagtttacaatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcacacaagaaggcattcttatgttaaagctagagtggtctaagtgtgagtttacaatt 383

                                                                 
Query: 182 tagttaattcacttaccaaaagaaaataaaaatgagtgttataagttatccttt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagttaattcacttaccaaaagaaaataaaaatgagtgttataagttatccttt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 891
Length adjustment: 10
Effective length of query: 479
Effective length of database: 881
Effective search space:   421999
Effective search space used:   421999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)