BAC Information

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BAC

Clone NameMSMg01-048G19
Chromosome7 (Build37)
Map Location 116,602,334 - 116,602,891
singlet/doubletsinglet
Overlap geneTrim66
Upstream geneOlfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik
Downstream geneRpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048G19.T7 (MSMg01no048_g19.b1)MSMg01-048G19.TJ (MSMg01no048_g19.g1)
ACCAG278196AG278197
length1,1241,178
length of high quality
(start - end)
559 (50 - 608)---
definitionCHROMAT_FILE: MSMg01no048_g19.b1 PHD_FILE: MSMg01no048_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:22 2005CHROMAT_FILE: MSMg01no048_g19.g1 PHD_FILE: MSMg01no048_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATAAAAGTTGTTCAAAATTCTCATATTCTAAGACAAAAGACCTTTG
AAATAGCTGTGACATACATTTGTGACAAGACTCTCTCTCTCACTTAGACC
TTCCACTCCTGTTATTTGAACTTTTGGCCACACAATTGTTATCAACCGTG
TGTTCATTCGTAGTGGTAACAGTCCTACTGTGGGTCTTCTTCCTGAGACA
GGATGAAAGCCATTATCTTTCTGGCAAAGAGGAGTACAGATGATTCTCAG
AGGCTGCCGACAGGTAACAGCCAAGAGCTTAGAAATCACCTGTTTCCCAG
GCACTCGTGTTATCTCCTGTCATTCTCTGCAGTCTCTGTATTAGCACCAC
CCCGGAGGCCGGAGCACAGCACGTCAACACAGATGACCAGAGAACAGAGG
TGAGGCACACACAGGAGCTCCTGTTTATCAGCACTGTCCTGTTTGCTTTT
CTTGGGCAACGCTGGGTCTTAAATGTCAATTTACTTGCATAGCATATAGG
GTTATTCCTATCTGTAATAAGGACCAATAATCTTCCAGTTGGACCGTCAG
TATAAAGAGAAAAAATAATCCAGTTTGGTGGAATTGTTGTTCTTGTATGT
ATTAAGGGCCTACAAAATAGACTGATCCATTTCCAAATAATTCATATTAC
CTTACATGGATAAGTCCTAAGTGTCCAGTTATTTTCCTCGTTATTTCAGT
ATTTCTTGACTAGTTCTGATTATATGAAACAACCACTGAATCACTTGTAT
AAATGGTTTCTGGTTGTGTTGTTTAATATATTTCACTGTTATAGTGGTTT
GTTGTCTTATTTGAAAGTCTGTGTTTGATTCCTACTAATCATATTTTTTT
TTTTAATATTCTTATTTTTTTTTTTATAAATGTTTTATTTTTTTTATTTT
TTTACTGATTCACTTTTCTTTTATTTATTTTCTTATTTATTTATTAATCT
TTTTCTCTTTTTTATATTACTTTTTTTCTTCATATCTTCTATGTTTTTTT
CATTATTTCTCCTATTTCTAATTATTTTTATCTACTTTTATTTTTTTTAG
TTTTTTCATTTATCTACTTTTTTTACTACATTTTCCTTTTATTTTTTTTT
TTTTCTTTGTATTTTTTTTTTTTT
NTTTTTACGATGGAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTAGGACTCTGTGTATTTGAATATGTGTA
TAATTTATACGATGTAGTCTATATCACCCACGAATGTATATATGTACTAA
AANTTGCAGGTCATTTTTCTTTCCTTTAAAACCATGGCATATCTTGGCGG
GTCTAAAATTACCGTGTAAACAAATTGGGCCTCAACCCAAAAAACTTGGC
TTCTCTACCTCCCCAAGGGAAGAAAAAGNNGGGGGCCCCCAGGCGGAAAT
TGNTTTTNNNGGNNNNNCTCCNNNGNNNNNNNNAAGGGGGGGCAAGGTCC
CNNNNNNCGCNNNNANCGNNAAAAATCGGGGAAAATTTTTCCCCGGGGGT
NTGTGTTGGGGATAAAAAATTTNNCAACCTCAAAGAAGNNNNNNNNCNTN
NNNNTTAAAAAGAATGNNCTCTCTAAAAAAGCCCTCTTTTTTTATCTTGT
GAAAAAATATTTTTTAAACNNNNTNNCNNCCNTNCCATCTAAAAAAACAT
CGGGGGTCCNNNNNNNTTACCCGAAGAAAAAGAATCTCTTTCTCTTNTTT
NNNNNTATTTTCCCTTTTTTATACGCTCCCNNNNNNNNNNTAATAAAGAT
ATATATTCTCTTANTTCTAAACAAGNNNTNTNTTCCTTAACCTNNTTTTG
TATTTTTTACATCTATCTTTTCTTTATTATATTTTTTTCTTACACACTCC
TTTCTCAGTATTTTTTTATTTTTTTTTATTCGNTTNTNNNNNNNNNNTNT
NTNTTNTTTGATTTATTTTTNTTTTNTTTTCTTNTTTTTTTTTTTTTTTT
TTTTTTCTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTCTTTT
TTTTTTATTTTTATTNTTTTTTTTTTTTTTTTTTTCTCTTTATTTATTTT
TTATATAATATTTTTTATATTATTTTTTTTTTTATTTTATTTATATTTCT
TATTTTTAATTATTTTCTTTTTTTTATATTTTAAAATTTTTTTTTTTTTN
AATTTTTTTTTGTTTTATATATTACTTTATATTATATATTTAAAATTTTA
TTTTTANTATTTTATNTTTNTNTATTTATTATTTTATATTATTAATTTAT
ATTNATTAATATTTTNTTTATTTATNAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_g19.b1 MSMg01no048_g19.b1 CHROMAT_FILE:
MSMg01no048_g19.b1 PHD_FILE: MSMg01no048_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:22 2005
         (559 letters)



>mm_chr7_116602134_116603091
          Length = 958

 Score =  973 bits (503), Expect = 0.0
 Identities = 545/559 (97%), Gaps = 1/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatagctgtgacatacatttgtgacaagactctctctctcacttagaccttccactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaatagctgtgacatacatttgtgacaagactctctctctcacttagaccttccactcc 260

                                                                       
Query: 61  tgttatttgaacttttggccacacaattgttatcaaccgtgtgttcattcgtagtggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttatttgaacttttggccacacaattgttatcaaccgtgtgttcattcgtagtggtaa 320

                                                                       
Query: 121 cagtcctactgtgggtcttcttcctgagacaggatgaaagccattatctttctggcaaag 180
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cagtcctactgtgggtctccttcctgagacaggatgaaggccattatctttctggcaaag 380

                                                                       
Query: 181 aggagtacagatgattctcagaggctgccgacaggtaacagccaagagcttagaaatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagtacagatgattctcagaggctgccgacaggtaacagccaagagcttagaaatcac 440

                                                                       
Query: 241 ctgtttcccaggcactcgtgttatctcctgtcattctctgcagtctctgtattagcacca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 441 ctgtttcccaggcactcgtgttatctcctgtcattctctgcagtctctgtaagagcacca 500

                                                                       
Query: 301 ccccggaggccggagcacagcacgtcaacacagatgaccagagaacagaggtgaggcaca 360
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ccccggaggccggagcatagcacgtcaacacagatgagcagagaacagaggtgaggcaca 560

                                                                       
Query: 361 cacaggagctcctgtttatcagcactgtcctgtttgcttttcttgggcaacgctgggtct 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 cacaggagctcctgtttatcagcactgtcctgtttgcttttcttgggcaaagctgggtct 620

                                                                       
Query: 421 taaatgtcaatttacttgcatagcatatagggttattcctatctgtaataaggaccaata 480
            |||||| |||||| |||||||||| |||||||||||||||| | |||||||||||||||
Sbjct: 621 aaaatgttaatttagttgcatagcacatagggttattcctatat-taataaggaccaata 679

                                                                       
Query: 481 atcttccagttggaccgtcagtataaagagaaaaaataatccagtttggtggaattgttg 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcttccagttggactgtcagtataaagagaaaaaataatccagtttggtggaattgttg 739

                              
Query: 541 ttcttgtatgtattaaggg 559
           |||||||||||||||||||
Sbjct: 740 ttcttgtatgtattaaggg 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space:   520452
Effective search space used:   520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)