BAC Information

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BAC

Clone NameMSMg01-049A08
Chromosome7 (Build37)
Map Location 6,254,508 - 6,254,984
singlet/doubletsinglet
Overlap geneZfp667
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821
Downstream geneZfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049A08.T7 (MSMg01no049_a08.b1)MSMg01-049A08.TJ (MSMg01no049_a08.g1)
ACCAG278627AG278628
length1,2561,215
length of high quality
(start - end)		775 (46 - 820)488 (67 - 554)
definitionCHROMAT_FILE: MSMg01no049_a08.b1 PHD_FILE: MSMg01no049_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:35 2005CHROMAT_FILE: MSMg01no049_a08.g1 PHD_FILE: MSMg01no049_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATTTTNNNNNNNNGCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCAATGAAAATGAAGGCACCCCATATCTAAACGTATGGG
ACACTATGAAAGCAGTGCTAAGAGGAAACTTCATAGCATTAAGTGTCCTC
ATAAAGAAATCAGGGTCCGGGTGTGGTGGCACACGCCTTTAATGCCAGCA
CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCT
ACAGAGTGAGTTCCAAGACAGCCAGGGCTATACAGAGAAACCCTGTCTCA
AAAAACCAAAACAACAACAACAAATCAAAAACAAAAACAAAAACAGGGAG
TTCTCATACTCTTGAATTAAAAGTACATCTGAAGGCTCTAGAAAAAAAAA
AAAAGAAGAAGAAGAAGCAAACACGCCCAGTTTACATTTTACTTCAAAAG
CCTGTACTCTACAAAATTGGAAAGTCTAAATGAAATGGATGATTTTCTAG
ATAAATACCAATTACCACCAAAGCTAAGTCAAGATCACTTAAACTATTTA
AATAGTTCTATAACCACTAGGGAAATAGAAACAGTCATTAAGTCTCCCAA
CCAAAAAAGCCCATGGCCAGGTGGCTTTAGTGCAGAATTCTGTCAGACTT
TCAAGGAAAAGCTAATGCCAATATTTTTCANACTATTCCACAAAATAGAA
ACAGAAAGAACACAACCAAACAGCCTATGAGGCCACAGTCACACTGATAC
CTAAACCACACAAAGACTCAACAAAGAAACAGAATTTCAGACCTATTTCT
CTTATGAACATTGATGCAAAAATACAATAAAATACTCCCAAATAAATTCA
AGAACACATCACCTACCATGATCAAGTAAGCTTCATCCCAGGGATACAGG
GGTGGGTTCAATATATGAAAATCCATCCACTTAACACACCCTATAAACAA
ACTGAATGGGAAAAAAAAACCCCCTTGATCCCCTCCTTAGGGGCAAAAAA
AGCATTTGAAAAAAATTCCACACCCCTCCACGATAAAAGTATGGAAAGAA
AAGGAAACCAGGGAACTACCTTAAGCTTACCTTTTCCCAGTTTATAGCCC
ACTTCCATTTAATGTGAAAAAAACTTTAAGGCTTTCTCACTTAAGGCGGG
GACAAAAAAAGGGGTGTCCCCCTCCTACCAATATTCTTCCAGGGAAAACT
TGAAAGTTCTAGCTTGGACCATAAAACCCCCTAAGGGGAATCTTGGGGGA
TTCAAG

TTTTAAACATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTCTTAAAGGTACTTTTTTTCCTTTAATTTTG
AGACAATTTCTTATTATATTGGCTTGCATATATGCATATGTGCTGAGCTG
TCTTTGAATTCAGGATCTCCCTGACTTAGCCTCCTGATTGCCTGGAATTC
AGACATGACATCACTGTTATCAGCACAAGTAATTATTTTCAGCCATTTCA
GACTAATATGTCCTACTCCAATTTGATCAGTAAATAATAGATTCATTCTT
TTTAGCTTAATGTATTACTCTGCTTTCTTGGAGGGTTTCTCTCTCTCTCC
CCCCCCCCTCTCTCTCTGGCTTTTCGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA
ATCCGCCTGCCTCCGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCTACC
ACACCCGGCTGTTTCTCCTAAATTTAAAGTTTTTATAGTTTTCCATGTCC
ACTCAATCCTCATTGTTAGCATATCTTGTGGTTCTCAGTATTTTGGCACT
CAAGAATCTGTTCTTTCTCTTTATAGCTTTACAAAGACACTCACTTACTT
TGTAAGTGTTGTCACGCCCTGTTATTCCGTTGTTAGTTTTCCATTTTCTA
ATTCTCTATCTTAATTCTACTAGTATTTCTTATACACTTTTAACTTCCTT
CTATTTCTTTTTATTTTCCTTTTTTTTTTTTTTTCTTCATCTATTAATTA
TCTTTTTTATATATTTTTTTTTTTTTTTTATTATTAATTTTTTTTTTTTT
GTATTGATTTAATTTTCTTTAACTTTTTTTCAATACCTCTTCTATTCATT
ATCTTCTATATATCTATACATTTTCATCTTCTTTATCTTATTATTACCAT
TTATATTATCTATTTTTTTACTCTTCTAATCTTCTTTAATTTTATTACTC
ATTTTCTTTTCAACCCTACTATCATTCCCTTATTTCAACTTCCCTTTCTA
TTTATCTTTAATTTCCATAATATTTTTTTTACATTTCTTATTTATTTTCC
TTTTTATTTGTTATTATTAATACTATATTTACATAATATTTTTCCTCTCT
CTTTTTTTATTTATTTCATTTATCTTTTCTAATATATATATTTATCTCTT
CTTTTTTCATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_a08.g1 MSMg01no049_a08.g1 CHROMAT_FILE:
MSMg01no049_a08.g1 PHD_FILE: MSMg01no049_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:35 2005
         (488 letters)



>mm_chr7_6254307_6255194
          Length = 888

 Score =  837 bits (433), Expect = 0.0
 Identities = 469/489 (95%), Gaps = 14/489 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctcttaaaggtactttttttcctttaattttgagacaatttcttattatattggcttgc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctcttaaaggtactttttttcctttaattttgagacaatttcttattatattggcttgc 261

                                                                       
Query: 62  atatatgcatatgtgctgagctgtctttgaattcaggatctccctgacttagcctcctga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atatatgcatatgtgctgagctgtctttgaattcaggatctccctgacttagcctcctga 321

                                                                       
Query: 122 ttgcctggaattcagacatgacatcactgttatcagcacaagtaattattttcagccatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgcctggaattcagacatgacatcactgttatcagcacaagtaattattttcagccatt 381

                                                                       
Query: 182 tcagactaatatgtcctactccaatttgatcagtaaataatagattcattctttttagct 241
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 tcagactaatatgtcctactccaatttgatcactaaataatagattcattctttttagct 441

                                                                       
Query: 242 taatgtattactctgctttcttggagggtttctctctctctcccccccccctctctctct 301
           ||||||||||||||||||||||||||||||            ||||||||||||||||||
Sbjct: 442 taatgtattactctgctttcttggagggtt------------ccccccccctctctctct 489

                                                                       
Query: 302 --ggcttttcgagacagggtttctctgtatagccctggctgtcctggaactcactttgta 359
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttggtttttcgagacagggtttctctgtatagccctggctgtcctggaactcactttgta 549

                                                                       
Query: 360 gaccaggctggcctcgaactcagaaatccgcctgcctccgcctcccgagtgctgggatta 419
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 550 gaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggatta 609

                                                                       
Query: 420 aaggcatgcgctaccacacccggctgtttctcctaaatttaaagtttttatagttttcca 479
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 610 aaggcatgcactaccacacccggctgtttctcttaaatttaaagtttttatagttttaca 669

                    
Query: 480 tgtccactc 488
           |||||||||
Sbjct: 670 tgtccactc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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