BAC Information

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BAC

Clone NameMSMg01-050O16
Chromosome7 (Build37)
Map Location 126,971,178 - 127,177,678
singlet/doubletdoublet
Overlap gene2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3
Upstream gene9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O16.T7 (MSMg01no050_o16.b1)MSMg01-050O16.TJ (MSMg01no050_o16.g1)
ACCAG279846AG279847
length1,2281,204
length of high quality
(start - end)
277 (111 - 387)270 (130 - 399)
definitionCHROMAT_FILE: MSMg01no050_o16.b1 PHD_FILE: MSMg01no050_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:51 2005CHROMAT_FILE: MSMg01no050_o16.g1 PHD_FILE: MSMg01no050_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,177,402 - 127,177,678)(126,971,178 - 126,971,447)
sequence
CTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCATTGG
ATACGTTCCCACCCTTTAGCAGGTTAAGATGATATCATTGTCCTAGGGTG
TCCCCTAAGCCTGGATGAGGCCCCAAAGGTCATATTGGAGATGTGTGAGC
ATTCAGGGTGACTATATTGCAAAGCCTTTGGGTCTGTCCCGCCCTTACCC
CCATGAGCTTCAGAATAGTTACATTAAGTCACATTTATATAATATTTTTA
TATGTTGGCAGTTGGCTCAGGTGCTGTCCTTCCCTCACACTCACTGTTTG
CCCAAACACACAGTTATATTTAGTCCTGGTCTTAGTTAAGGTTTCATTGC
TGTGACAAGACCAACTCTTAAAAAGGACAATTATTTAATTGGTGTTACTG
TTTCAGAGCTTTAGTCCATTAACATCATGGTGGGAACTGTGCCATTGTGC
AGGCAGACATGATGCTGGAGGACCGCAGAGTTCTATATCTTGATCTGAAG
GCAGCCATAAGGACACTGTCTTCTGCAGGCATCCAGTCATCAGGGTCTCT
TTCCACAGAGCATGGAGACCTCAAAGCCCCACCTCCACACCGACACTCTT
TCTTTATCAAAGTCACACCTCCTTCAATAATGCCATACCCCCTAATAGTG
CCACTTCCCATGGTCCATCCACATTCTAACCACCACAGTCCTCATAATCA
TTGCTGGTGATATAACATATTATATCTCTATCATCTGTCGACTCATACAC
AGTGTAAACTCAACTCTTTTACTATAATAAGTCCTTATTTCAATCCTATT
GTATTTCAATTTATTTTTTTTTTCCCTGCTTCCTTCATAAATACCTGTGT
TCAATCAATCTGAAATATTAGAAAATTGTCTTATTTCTGGTCCTCTCTGA
AAATTTTCAATATCCTCCTTTGTTGTTCTTACATTTACATTCCTTTATTA
ATGTTTTTATTTCCTTGTCCCCACTTTTACCCTTCCTTTTCCTATTAAAA
TTATTATTTTTTGTTTCTTCACCTTGTTCACTTAATCTTAAATATTTCTT
TTCCTTTTTCTAATAAAAAATTTTCAATCCTCTATGTTTTCTCGATCTCT
ATTTTCTCCTTATATATTTGATGTCTTCTTTTTCTCTCTCTTTTATTCAC
TTTCTTCTTTTTTCTCTCATACTTCACACTTTTTTCACTTATATGCTCTA
TAATATATTTCTCTCTTCTTCTCTGATT
NNNTTTAGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGACAGCCGAGCTATGCTGAGAAACTCG
GTCTTAGGCCTTAGAGGAGCAAATGACCACAATGTTAGATTTGTTGGTAT
TTTTAACTTAGAAGACTTAGCCTGTAGCTTTTGATGCATTGTCCAGATTG
GAGAAATACATACATGCTCAGAAAGGGTGTGATTTCAAAGAAAAATAAAT
GTGTCAAATCCTTAGACTGTTGCTTAAACCTTGATAGAAAGCTTTAGGTA
CATTCCTAAGACGAAGGGAAATTAGAGTAACATCTTGTAATTAGACTCTC
TGCAGTGATGAAAATATGCCAGATAGTGTAGCCACTAGTCACATGTGACT
ATTGTTGTTGATAAACTGAGCTTTGAACTTAAATTTATATAGCTAAATAT
TGTTTTTTCCCCCCCCCATTGAACAGAATTATACGCTCAAAAAAGAACTA
TCAAGTCATGATCTAAAAAATGACTATTCTTACCTTAATCTCCTTCACTT
CTTTACAGTGTTTTAAAATGCCTGGAGTCAATGGGTCAGAAACTCCTTTT
CTTGACCCAGGATATAAATGAGCTTTCTTCTTATAGAAATTGTCAAACTA
TTAAATGCTCTTCAACTAAAAAGGTGAATGACCTATTGTACCTTTGTAGT
ATGTATTCACAACAGAGGAGCATGCAGCACTTTTGTACAATCCATGGAAG
TGCCAAGAATTTTGCACCAGTAACCCTGGCTAAAATGAGCAAGTCTGACT
TCTGTTTCAAATCTATCATGGAGCACTTGTTTAGTCAGTTACCTCATTAC
CTTCAGACCTTGCCTGTTTGTCACCACCTGTTTTCATAAAATCAGTTAGG
TTGGGCCCTTGCACCCCCTCTTTATACTTGTCGTTTTCCTGGTAATTTGA
AAACTGTTTTGTTTTTTTAATCCTCTCTTGGTGTTCTTTTTTTTTATTTT
TTATCTGGCTTCTTTTTTCTTACTCTATCCTTTATTCACTTGAGTATTCC
TTTTTCTCTTTATCTTTCCTTAATTTTACCCATCACTCTCTTGTATTAAT
TTTTGTTTCTTCTTTTTGTTCTCTTTCTTTTGCTCATTTTTTTTTCTTTT
TTCATCTCCCTACAACTTCTTTTCTTCTCCATTTACTGTTCCCTTTCTTA
CTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o16.b1 MSMg01no050_o16.b1 CHROMAT_FILE:
MSMg01no050_o16.b1 PHD_FILE: MSMg01no050_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:51 2005
         (277 letters)



>mm_chr7_127177357_127178033
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggatgaggccccaaaggtcatattggagatgtgtgagcattcagggtgactatattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctggatgaggccccaaaggtcatattggagatgtgtgagcattcagggtgactatattgc 263

                                                                       
Query: 61  aaagcctttgggtctgtcccgcccttacccccatgagcttcagaatagttacattaagtc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagcctctgggtctgtcccgcccttacccccatgagcttcagaatagttacattaagtc 203

                                                                       
Query: 121 acatttatataatatttttatatgttggcagttggctcaggtgctgtccttccctcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acatttatataatatttttatatgttggcagttggctcaggtgctgtccttccctcacac 143

                                                                       
Query: 181 tcactgtttgcccaaacacacagttatatttagtcctggtcttagttaaggtttcattgc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tcactgtttgccgaaacacacagttatatttagtcctggtcttagttaaggtttcattgc 83

                                                
Query: 241 tgtgacaagaccaactcttaaaaaggacaattattta 277
           |||||||||||||||||||||||||||||| ||||||
Sbjct: 82  tgtgacaagaccaactcttaaaaaggacaactattta 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no050_o16.g1 MSMg01no050_o16.g1 CHROMAT_FILE:
MSMg01no050_o16.g1 PHD_FILE: MSMg01no050_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:51 2005
         (270 letters)



>mm_chr7_126970978_126971647
          Length = 670

 Score =  507 bits (262), Expect = e-148
 Identities = 268/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgttagatttgttggtatttttaacttagaagacttagcctgtagcttttgatgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgttagatttgttggtatttttaacttagaagacttagcctgtagcttttgatgcat 260

                                                                       
Query: 61  tgtccagattggagaaatacatacatgctcagaaagggtgtgatttcaaagaaaaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccagattggagaaatacatacatgctcagaaagggtgtgatttcaaagaaaaataaa 320

                                                                       
Query: 121 tgtgtcaaatccttagactgttgcttaaaccttgatagaaagctttaggtacattcctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtcaaatccttagactgttgcttaaaccttgatagaaagctttaggtacattcctaa 380

                                                                       
Query: 181 gacgaagggaaattagagtaacatcttgtaattagactctctgcagtgatgaaaatatgc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaagggaaattagagtaacatcttgtaattagactctctgcagtgatgaaaatatgc 440

                                         
Query: 241 cagatagtgtagccactagtcacatgtgac 270
            |||||||||||||||||||||||||||||
Sbjct: 441 tagatagtgtagccactagtcacatgtgac 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)