BAC Information

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BAC

Clone NameMSMg01-051D13
Chromosome7 (Build37)
Map Location 3,644,561 - 3,644,704
singlet/doubletsinglet
Overlap geneLeng4
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4
Downstream geneTsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D13.T7 (MSMg01no051_d13.b1)MSMg01-051D13.TJ (MSMg01no051_d13.g1)
ACCAG280055AG280056
length1,2731,335
length of high quality
(start - end)
168 (124 - 291)161 (68 - 228)
definitionCHROMAT_FILE: MSMg01no051_d13.b1 PHD_FILE: MSMg01no051_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:36 2005CHROMAT_FILE: MSMg01no051_d13.g1 PHD_FILE: MSMg01no051_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTGTTGNNNTGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCGGCTATCCCCGAAGTACCTTGAAGCTGTGGCACCACCTCCAT
GCCGAGGGCTTGAATGATCGAGTGTGCCCGAACCCCTCCGAAGCTGAAAG
TCTGTCTCTTTCCGAAAGCTGAGCTCCAGGTCCCTCCTCCTCAAGTCTCA
ACGGGACTCGAAGATCTTGGCCCCGCCTCTCTGACCCGAAACCCCGCCCC
TTCACGTACTGGCAGCTCTTTGCCCGGGGACCTCCTAGAAAGATTCGCGA
CCGGCATCTTGCGGCAGACTGGTGTTCTGGGTACCTTTCTTGCGGTGCTG
TAACTCGTACAGCCGCGTCTCCTCGGGGCCTGGACCGCGCATCCCTGCCG
GTGCCTTTTTTACCGGTCATTGCGGTGGCGTGCTGAGCTGGGGACGCGTG
TCGCGAGTCTAGTTCGTCCCCCAAAAGGTGTCCCGTCATTCTTCTGCCCT
ATGCATGGTTCAGGTGAGCCCATTTTCGTGTTGTCTGTCGTCTGTTTTTA
TTATCGTACTTTGTCGTTCTGTTCTTTCTTTTTTCCTTTTTTTTTGTTTT
CTTTTTTTTTTTATTTTTTTCTTTTTTTTTTTTTTTTTCTTCTCTTTATC
TTTTCTCTCTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTTTTTTTTTTT
TTTATTTTTCTTTTTCTTTTTCTCTTCTTTTTTTTTTTTTTTTTTTTTCT
CTTTTTTTTCACTTTTTTTTTCTTTTTATTTTTCTCTTTTTTTTTTTTCT
TTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTCCTTTTTTTTTCTTTCT
TTTTTTTTTTTTTTTTTTTCTTTATTTATTTCTTTTTTATTTTCTATTTT
TCTTTTTTTTTTTTCTCTTTTCCCTTCTTTTTCTTTTTTTTTTTCCTTAT
TTTTATTTCTTTCTTTTTTCTTTCTCTTTTCTTTCTCTTTTTTCTTTTTT
CTTTTTTTTCTTTCCTTTTTTCTTTTTTTCTTCTCTTTTTTTATATTCTC
CTTGTCTTCTTTTTTCTTCCTTTCTCTTTTTTTCCTCTTCTTTTTTCTTT
CCTTTCCTTTTTTTTTTATTCTTCTTTTTATTTTTATTTTTTCTCTCCTC
TTTTTTTTTCTTTCTTCTTTCTTTCTCTTCTTTTTATTTCCTTTATTTTC
CTCTTCACTTCTTATATCTTCTTTCACTACTCTCTTTTTTCCTTTATTCA
ATATATTCCTATTTTTAACTTTT
TTTTTTTAAGATGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTAGGATAAAGGTGACCTTTACTTCAATTG
GTTGGCTCTATCTCCAGAGAAGCCCCCCAATGGTTGCTAGGGGGCTGGAA
ATTGTTGCCGACTCTGCCCTTGCCTCAGGCCAGGTGGTAGGGCAGCCTCT
GATGGTGAGGCAGTTTCTGATTGGCTGCCTGACGCCCGGTGGTGGGCAGC
CTCTGATGGTGAGGCAGTTTCTGATTGTTTGCCTGAGGTCAGTCGATTGT
CCGCCTCTGATGTTGATGCTGTTTCTGATTGGTTGCCTCAGGTCTATGGT
TTTATCTATATCTGATTCGCCTGTAATTTGTCTTATTCTGCTTATTTTTT
TTTTTTTGTCTATTCTTCCTGATCTTCTTTTTTTGCTCTATTGTCATCGT
TCTTTTTTTTTTTTGATCTGTCTTTTTTGTTTCCCTCTATTTTCTTTTGT
ATTCTGTTGTTTTTTGTTTTCCTTCTTATTTTTTTCTTTTTTTTTTTTTT
CTCTATTTTTCTTTTCTCCTTTTTTTCTTTTCTCTTTTTTTTTTTTCTTT
TTATTTCTTATTTTTTTTTTTTTTTTCTTTCTTTTTTTTTCTCTCTTTTT
ACTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTCATTTTCTCTTTT
TTTTTCTTTTTCTCCTATTTTTTTTCTTTTCTTTTCTTTTTTCTTCTTTT
TTCTTTTTCTTTCTTTCTCTTCTTTTTTCTTCTTTCTTTTTTTTTTTTTT
CTTTTTTCTTTTTACTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTCGT
TTTTTTTCTCCCTTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTC
TTTTCATTCTTTTACTTTCCTTTTTCCCTTTTTCTCTCTTTTTTTTTTCC
TTATTCTTTTCTTTTTTCCTTCTTTTTCTTTCCTTATTCTTTTTTCTCTT
GTACTCTTCTTTTTTTTTTTTTTTCCTTTTTTTTTTTTCTTTTTTTCTTT
AATCTCTTTTTTTTCTTTTTTTTTCTTCTTTCTTTCTTATTTTTTTTTTT
CTTTTATTTTTTCTTTTTTTCTCTTTTTATTCTTGTTCTCTTTTCTTTTT
TTCTTTATTTATTTTCTTCTTTTTTTTCTTTGCTTATTTCCTTTCTCTTT
TGTTTTTACTTTTTTCTTATTCTCTTTTTGTTTTCTTCTCTCCTTTCTTT
TTCTTTTCTTTTTATTTTTTTTCCCCCGATTTTTTATTATTTTTTTTTTT
TTTTTCCCCTTGTTTTTTTTTTTAGTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d13.b1 MSMg01no051_d13.b1 CHROMAT_FILE:
MSMg01no051_d13.b1 PHD_FILE: MSMg01no051_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:36 2005
         (168 letters)



>mm_chr7_3644316_3644883
          Length = 568

 Score =  253 bits (131), Expect = 3e-72
 Identities = 144/155 (92%), Gaps = 11/155 (7%)
 Strand = Plus / Minus

                                                                       
Query: 14  tccgaagctgaaagtctgtctctttccgaaagctgagctccaggtccctcctcctcaagt 73
           |||||||||||||||||||||           ||||||||||||||||||||||||||||
Sbjct: 389 tccgaagctgaaagtctgtct-----------ctgagctccaggtccctcctcctcaagt 341

                                                                       
Query: 74  ctcaacgggactcgaagatcttggccccgcctctctgacccgaaaccccgccccttcacg 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctcaacgggactcgaagatcttggccccgcctctctgacccgaaaccccgccccttcacg 281

                                              
Query: 134 tactggcagctctttgcccggggacctcctagaaa 168
           |||||||||||||||||||||||||||||||||||
Sbjct: 280 tactggcagctctttgcccggggacctcctagaaa 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)