BAC Information

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BAC

Clone NameMSMg01-051F23
Chromosome7 (Build37)
Map Location 84,994,303 - 84,994,543
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051F23.T7 (MSMg01no051_f23.b1)MSMg01-051F23.TJ (MSMg01no051_f23.g1)
ACCAG280155AG280156
length1,2191,210
length of high quality
(start - end)
241 (116 - 356)335 (78 - 412)
definitionCHROMAT_FILE: MSMg01no051_f23.b1 PHD_FILE: MSMg01no051_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:57 2005CHROMAT_FILE: MSMg01no051_f23.g1 PHD_FILE: MSMg01no051_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCTACACTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CCAGTTTTTTGTTTGGATGTTAACGATCACCATTGGCACATGCGCTTGAA
GTCTGAGCCCTAATGGTATTGCTGCCTTGCCCGTTATGGAACCCTTTGAG
ATACAGGGCTTGGCTTTCAAAAGTAGGTCATGATGGGTAGATATTGAAGG
TAACATCTGCTCCTGAGTCCTCTACTTCCTGATCTACAAAAATATGAAAA
TGTGTTCACCGACTGTCCTGCTACTCTGAGTGGAACTTCCTCAGCAGCTA
AACTAGGGTCAAATGGACTATCTGTCCCTTGGGTTGCTTATGTCAGGTTT
ATTGGTCCCAGTAATGAGAATGGTTATCAATGTGCTGGACACTCGATTTA
TTATACCAGGATCCTTTAAAGATGTCCAGAGATTCTAAAGGATATTGGAT
TATTCTTGCTCCCTCATAGGACACGGCTAAGGCATGCAAGTTTTAGAGAG
ATGATGATTTCTTATTATCTTGTTTTTGTTAAGGATGTTTTCTTTAGTCT
GTATGTTTGTATTGTTTGTGTCCTTGTACGCTATTATTAGTTTATTTTTA
TTATCTTTCCTTTGTTTATTTTTTGCTCCCTTTTATTTTATGTTTCATCT
TTTTTTTTTTCTTCTTATTTATTTCTCCTTTCTTTGTTTTCCTTTTTTTT
TTTTTTTATATTTATTTTTTTTTTGCTTTTTTTTCCCTATTTTTCTTCTT
CTTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTCTTTTCTCTTTT
TCTTTTTTTTCTTTTTTTCCTTTCTTCCTTCTTTTTTTTTTTTTCTCTTT
CTCTTTTTTTTTTTTTTTTCTTATTCTCCTTTCTTTTTTTTTTTTTTCTT
CTTCTTCTTTCTTTTTCTTTTTTTTTCTTTTCTTTTTATTTCATTTCTTC
CTTTTTTTTTCTTTTTTTCTTTTCTTTTCTCTCTTTATTTTTTTTTCTTT
TTCTTCTCTTCTTTTTCTTCTTTTTTCTCTTATCTTCTTTTTTTCTTATT
TCTAACCATTCTTTTTTTTTTGTTTTTATCTTCTTCTTTTTTCGCTTTTT
TTTTTTTTATCATTATTTTTTTTTTTTTTATTTTTCTCTTTTATTTATCT
TTTATTTTTTTTTCTCTTTCTTTCTTTATTTCTATATTCTTCTCTTTTCT
CTCTTTATTTCTTTTTTTT
CAAATTTTTNNNNATATCATGCGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAACCGAGAACTCCTAAGCC
TGAAAAATAGCTTCGGTGATTTAACTGGAAATAAAATACCCCTCAAACAA
TTCAATGGCCTTTCTCTATACAAAGAATAAAAAGGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGC
ATGACTCTAACTAAGGAAATGAAAGATCTGTATGATAAAAACTTCAAGTC
TCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGTTGAAAAGATCTCCCAT
GCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAA
GCAATCTACATGATTTTATGTAATCCCTATCAAAATTCCAACTCAATTCT
TCAACAAATTAGAAGGAGCAATTTGCCAATTCATCTGGAATAACAAAAAA
CCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGCGGAAT
CACAATGCCTGACCTAAAGCTTTACTACAGAGCAATTGCGACAAAAACTG
CATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATATAACTGAA
GACCCAGAAATGAACCTACCCACCTACGGTCACTTGATCTTATAAAAGGG
ATGCTAAATCATCCATTGTACTAAAGACAGTTTTCTCAAATAATTTGTCT
TCCGGCTCAACCTGGTTGTTATTATGTTTAACAATTGCTTTTTGTATCCT
TTACTTATCTTCCTTGTTTTTTATGTTCTTATCTTTTTTGTATTTATTTT
ATTTTTCTCTTTTTATCTCCAATACTTTTGTATCTTCTTTTTTACTTTAA
TTATTTCCTTATTTTTCTTTTTTTCATTCTTCTTTTTCTTTCTTTCTTAA
TTTATTTTCTTTTTATTTTCTTAATTCTTTTCTTGTTCTTCTTTTTTTCA
TTCTATATTTTTATTTATCTACCTTTCTCTTTTAAATCTTTTTTGTCTAT
ACCTCCCCTACTGCCTTTTCCTTACTTTATTTCTCTTCCCATATTCTCTT
TTTTTTCTTTCAATCTTTCTTCATTTTATCCCTCTTTTTATTATATTAAT
TTGTTATTTTATTTTATTTCCCCCCTATTGNTTTTATATAATATATTTTA
TTATTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_f23.b1 MSMg01no051_f23.b1 CHROMAT_FILE:
MSMg01no051_f23.b1 PHD_FILE: MSMg01no051_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:57 2005
         (241 letters)



>mm_chr7_84994103_84994743
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtattgctgccttgcccgttatggaaccctttgagatacagggcttggctttcaaaagta 60
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattgctgccttgggagttatggaaccctttgagatacagggcttggctttcaaaagta 382

                                                                       
Query: 61  ggtcatgatgggtagatattgaaggtaacatctgctcctgagtcctctacttcctgatct 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggtcatgatgggtagatattgaaggtaacatctgctcccgagtcctctacttcctgatct 322

                                                                       
Query: 121 acaaaaatatgaaaatgtgttcaccgactgtcctgctactctgagtggaacttcctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaaatatgaaaatgtgttcaccgactgtcctgctactctgagtggaacttcctcagc 262

                                                                       
Query: 181 agctaaactagggtcaaatggactatctgtcccttgggttgcttatgtcaggtttattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaaactagggtcaaatggactatctgtcccttgggttgcttatgtcaggtttattgg 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)