BAC Information

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BAC

Clone NameMSMg01-051M18
Chromosome7 (Build37)
Map Location 111,336,583 - 111,336,737
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648
Downstream geneOlfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051M18.T7 (MSMg01no051_m18.b1)MSMg01-051M18.TJ (MSMg01no051_m18.g1)
ACCAG280454AG280455
length1,4701,405
length of high quality
(start - end)
115 (134 - 248)170 (116 - 285)
definitionCHROMAT_FILE: MSMg01no051_m18.b1 PHD_FILE: MSMg01no051_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:59 2005CHROMAT_FILE: MSMg01no051_m18.g1 PHD_FILE: MSMg01no051_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGNTCTGAGCCTTTTATTTCTCTGGGGTTATTTGATTTTCT
GAAGTCCACCTTTTTGAGTTCTTTATACCCGNTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCTTTAG
GTCCCATTTGACGATTCTCGATCTTACTGTCTAAGTCATTGTTGTTCTGT
TCTGCGAATTTTTCCCTTGTGCCCATTTTTTCTAGGCTTTCTTCCTCTTT
CTCCTCTACATAGTTCTGTGTTTCTGCTTTTTATCAGATGTTTTTTGTTT
TTTTTTTATCCTTCATACCTATTTCTACTGTTTTTTTTCTTTGTTATTTT
TCTCCTCTTTTTTCTTCTTCCCACCCCCATTTTTTTATTCTTTCGTCTCT
TTTATAATAATTATTTTGTTTTTTTTTTTATTTTTATTTTCATTCATTTT
TTCTTTTTCTTTTTTTTTTTTCTTTCTTTTTTTTCTATATTTTTTATTTT
TTTTTTTTTTTTATCTTTTTATTTTTTTTTTTTCTTTTTATTTTTTTTCC
TTTTCTTCTTTTTTTTTTTTTCTTTTTTTTTTTCTTTATTTTTTTTTTAT
TTTTCCTTTCTTTTTCTTCTTATATCTTTTCTTTTTTCTTTTTCTCTTTT
TATTCACTTTTTATTTTTTTCTAATTTTTATCTTTCTTTTTTTTTTTTTT
TTTTTTTCCCTATTTTCTTTTTTTCTTTTTATTTTCTTTATTTTTACTTT
TTCTCTCTTTTTTTTTTTTCCTTTTTTTATTTTTTTTTTTCTATTCTTTT
CCTTTTTCTTTTTCTTTCTTTTATTCTATTTTTTTCCTTTTTTTTTTTTT
TATCCTTTCTATTTTTTTTACTCTTTTTTTTCTTTTTATTTTTTCTTATT
TTCATTTTTTTTTTTTTTTTGTTTTCTTTATTTTTGTTTTTTATTTTTTT
GATTTCCTTCTTTTTCTTTTTATTCTTTTTTATTTTTTTTTATATCTTTA
TTTTTTCTTAATTTTCCAATTTATTTATTTTTTTTCCCCCCTTTCTTTTT
CTTTTCACTTCTTCATATGTTTTGCCTTCTATTATATTCTTTCTTCTTTA
TTTTCTTCTTTCTTTTTCTTATTTTGATATTAATATTTTGTTTGTCCTTC
TCTCTTTTTTATATTCTTTTATGCCCTTATTTCTTTTTTTTAATGCTCTT
TTTATCGTTTCGCTTTCTTATTTCTTATATTATTATTTATATTTTATCTT
GTTCTCTCTANTTTTTTTTTTTTATTCTTAATTTTATTCTTTTATNATCT
ATCTTTTATTCATTTCTTTTTATACTATTTCTTTTTATTGTTTTTCCCCC
TTTTTTTTTTTTTTTTTTTT
TTTTTTAAAACGGTAGCTGGGGCGCCGGTCGTCTAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTTAAAAGCAGGATCAAGGAGTGGCACCCTGAC
AGGCAGCCTTAAATGTTCTTTCTTCCCCCTGGAGGAGTTCAAATGAAGTA
AAATGTCTTAAAATAAAATCTCCAATAAATTCAATTACATGTATTGTATT
GAGCAATTTGTTTAATTTGAGACCTTGTTACTATTTTTGATGGCTAGGCA
CATAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTTTATTATTATT
TTTTTATTTTTTTTTTATTATTTTTTTTTTTTCTCTTTTCTTCTTTTTAT
TTTTTTTTCTATTTTTTTTTTTTTTTTTATATTTTTTCTTTTGCTTTTTT
TTTTTCTATCTTTCTTTTTTTTTTTTTTTTTTTTCTTCTTTTTATTCCCT
CCCTCTTTTTTTTTCCCCCCCCCATTTTTATTTTTTTTCTTTTTTTCACA
TAAAAAATATTTTTTTTTTTTTTCTTTTTCTTTATTTTTTACATCTTTTT
TCTTTTTTCTTATCTTTTTTTTATTTCTTTTTCTTTTTTTTTTTTTTATT
ATTCCTCTTTTTTTTATTTTTCTTTTTTTTTTTTTCTCTTTTCTTTCTTT
CTTTATTTTTTTTTTTTTCTTTTTTTTTCTTTTTTATTTTTTTTATTTTT
ATTTCTTCTCTCTTTCTTTTTATCTTATTTTTTTATTTTTTTTTTGTTTT
TTCCCTTTAATTTTTTCTTTTTACTATTTTTTTCTTTTCTTTTTTTTTTT
CTTTTTCTTTTATATCTTTTACTTTTTTTTTTTATTTCCTTTTTTTTTTT
TTTTTTTCTTTTTTTTTCTCCTCTTTTTTTTTTTTTTTTATTTTTCTATT
TATATTTTATCTTTTTTTATTTTTTTTTTTTTCTTTTATTTTTCTTTACT
TTTTTTATATTTCTTCTCTTCTATTTACTATTTTTTCTTTTTATCTATTT
TTTTTTTTTTCCTCTTTTTCTTTTTTTTATTTCTTTTTTATTTTTTTATT
TTTACCTCTCTCTTTTATATATTTTTTATAATAGTTATTTTTTTTTTTCT
TTCTTTCTATTTTATATATTATTATCTTTTTTCTTTTTTTATATTTCTTT
TTTTTTTTTTTTCTTCTATAATTTTTTTATTCTTTTTTTTTTATCTTTTC
TTATTCTTCTTTTATATTTTATTTATCTCTATTATTTTTTTCTTTTATTT
CTTCTTCCCTTTTTCTTATATTTTCTTTTTTCCTTCTCTTTTACTTATTT
ATTTATATATTCTAATTTTTTTTATTCTTTTTTTTTTCTATCTTATATTT
CTTTTCATCTATCTATTTTTTTATTTTAATTTTATCTTTTTTTTTATTTA
TTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_m18.g1 MSMg01no051_m18.g1 CHROMAT_FILE:
MSMg01no051_m18.g1 PHD_FILE: MSMg01no051_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:59 2005
         (170 letters)



>mm_chr7_111336369_111336938
          Length = 570

 Score =  300 bits (155), Expect = 3e-86
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  tggaggagttcaaatgaagtaaaatgtcttaaaataaaatctccaataaattcaattaca 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tggaggagttcaaatgaagtaaaatgtcttaaaataaaatctccaataaattcaattaca 274

                                                                       
Query: 75  tgtattgtattgagcaatttgtttaatttgagaccttgttactatttttgatggctaggc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtattgtattgagcaatttgtttaatttgagaccttgttactatttttgatggctaggc 334

                                              
Query: 135 acataaaatgtgtgtgtgtgtgtgtgtgtgtgtgt 169
           |||||||||||||||||||||||||||||||||||
Sbjct: 335 acataaaatgtgtgtgtgtgtgtgtgtgtgtgtgt 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)