MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-051N10
Chromosome	7 (Build37)
Map Location	97,528,710 - 97,528,958
singlet/doublet	singlet
Overlap gene	Sytl2
Upstream gene	Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
Downstream gene	Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943, Dlg2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Fzd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14366 MGI:108520
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prss23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76453 MGI:1923703
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040001 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040001
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 mRNAs, 3374 ESTs, 23 Proteins pseudo : _no_value

name	Me3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109264 MGI:1916679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc81 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70884 MGI:1918134
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 3 Proteins

name	l7Rn6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67669 MGI:96738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eed (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13626 MGI:95286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E230029C05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319711 MGI:2442580
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	EG384719 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384719 MGI:3644965
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	2310010J17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78329 MGI:1925579
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Picalm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233489 MGI:2385902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc83 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75338 MGI:1918255
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sytl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83671 MGI:1933366
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	Ccdc89 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70054 MGI:1917304
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein

name	Crebzf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233490 MGI:2675296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem126a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66271 MGI:1913521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem126b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68472 MGI:1915722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230218P12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78880 MGI:1926130
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	LOC666689 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666689
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC621816 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621816
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	LOC100039943 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 298 ESTs, 10 Proteins pseudo : _no_value

name	Dlg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23859 MGI:1344351
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fzd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348436 GeneID:14366 MGI:108520
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : frizzled homolog 4 (Drosophila) transcript_id : NM_008055.3

name	Prss23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326505 GeneID:76453 MGI:1923703
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protease, serine, 23 transcript_id : NM_029614.3

name	Me3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802714 GeneID:109264 MGI:1916679
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : malic enzyme 3, NADP(+)-dependent, mitochondrial transcript_id : NM_181407.3

name	Ccdc81 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257585 GeneID:70884 MGI:1918134
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 3 Proteins product : coiled-coil domain containing 81, transcript variant 2 transcript_id : XM_885490.3

name	l7Rn6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365156 GeneID:67669 MGI:96738
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lethal, Chr 7, Rinchik 6 transcript_id : NM_026304.2

name	Eed (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130429 GeneID:13626 MGI:95286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : embryonic ectoderm development transcript_id : NM_021876.2

name	E230029C05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257586 GeneID:319711 MGI:2442580
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA E230029C05 gene transcript_id : XM_001473432.1

name	EG384719 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257575 GeneID:384719 MGI:3644965
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG384719 transcript_id : XM_357814.6

name	2310010J17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257577 GeneID:78329 MGI:1925579
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310010J17 gene transcript_id : XM_896611.3

name	Picalm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130220 GeneID:233489 MGI:2385902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol binding clathrin assembly protein transcript_id : NM_146194.3

name	Ccdc83 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365025 GeneID:75338 MGI:1918255
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 83 transcript_id : NM_029256.2

name	Sytl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91718885 GeneID:83671 MGI:1933366
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 2 transcript_id : NM_031394.2

name	Sytl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91718888 GeneID:83671 MGI:1933366
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 2 transcript_id : NM_001040085.1

name	Sytl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91718890 GeneID:83671 MGI:1933366
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 2 transcript_id : NM_001040086.1

name	Sytl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91718894 GeneID:83671 MGI:1933366
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 2 transcript_id : NM_001040088.1

name	Sytl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91718892 GeneID:83671 MGI:1933366
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin-like 2 transcript_id : NM_001040087.1

name	Ccdc89 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380854 GeneID:70054 MGI:1917304
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein product : coiled-coil domain containing 89 transcript_id : XM_133591.7

name	Crebzf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122056688 GeneID:233490 MGI:2675296
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CREB/ATF bZIP transcription factor transcript_id : NM_145151.2

name	Tmem126a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801843 GeneID:66271 MGI:1913521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 126A transcript_id : NM_025460.2

name	Tmem126b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037122 GeneID:68472 MGI:1915722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 126B transcript_id : NM_026734.1

name	B230218P12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380804 GeneID:78880 MGI:1926130
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA B230218P12 gene, transcript variant 2 transcript_id : XM_896593.2

name	Dlg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118136296 GeneID:23859 MGI:1344351
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large homolog 2 (Drosophila) transcript_id : NM_011807.2

name	Fzd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560701 CCDS:CCDS21441.1 GeneID:14366 MGI:108520
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004926 - non-G-protein coupled 7TM receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : frizzled 4 protein_id : NP_032081.2

name	Prss23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541882 CCDS:CCDS21442.1 GeneID:76453 MGI:1923703
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : protease, serine, 23 protein_id : NP_083890.2

name	Me3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542169 CCDS:CCDS21443.1 GeneID:109264 MGI:1916679
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0048037 - cofactor binding [Evidence ISS]; GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity [Evidence IEA] [Evidence ISS]; GO:0004470 - malic enzyme activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA] GO_process : GO:0009060 - aerobic respiration [Evidence ISS]; GO:0006118 - electron transport [Evidence ISS]; GO:0006108 - malate metabolism [Evidence IEA] [Evidence ISS]; GO:0006800 - oxygen and reactive oxygen species metabolism [Evidence ISS]; GO:0006090 - pyruvate metabolism [Evidence ISS] codon_start : 1 exception : mismatches in translation product : malic enzyme 3, NADP(+)-dependent, mitochondrial protein_id : NP_852072.1

name	Ccdc81 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82907068 GeneID:70884 MGI:1918134
definition	codon_start : 1 product : coiled-coil domain containing 81 isoform 2 protein_id : XP_890583.1

name	l7Rn6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13399318 CCDS:CCDS21445.1 GeneID:67669 MGI:96738
definition	codon_start : 1 product : lethal, Chr 7, Rinchik 6 protein_id : NP_080580.1

name	Eed (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11230770 GeneID:13626 MGI:95286
definition	GO_component : GO:0035098 - ESC/E(Z) complex [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA]; GO:0045120 - pronucleus [Evidence IDA]; GO:0001739 - sex chromatin [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0042054 - histone methyltransferase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0016571 - histone methylation [Evidence IMP]; GO:0006349 - imprinting [Evidence IMP] codon_start : 1 note : lethal, Chr 7, Rinchik 5 product : embryonic ectoderm development protein_id : NP_068676.1

name	E230029C05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257587 GeneID:319711 MGI:2442580
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473482.1

name	EG384719 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257576 GeneID:384719 MGI:3644965
definition	codon_start : 1 product : similar to Btf3 protein protein_id : XP_357814.5

name	2310010J17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257578 GeneID:78329 MGI:1925579
definition	codon_start : 1 product : hypothetical protein LOC78329 protein_id : XP_901704.3

name	Picalm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32567788 GeneID:233489 MGI:2385902
definition	GO_component : GO:0005905 - coated pit [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0030276 - clathrin binding [Evidence ISS]; GO:0005545 - phosphatidylinositol binding [Evidence ISS]; GO:0005543 - phospholipid binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0006897 - endocytosis [Evidence IEA]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0006461 - protein complex assembly [Evidence ISS]; GO:0006898 - receptor mediated endocytosis [Evidence ISS] [Evidence IDA] codon_start : 1 product : phosphatidylinositol-binding clathrin assembly protein protein_id : NP_666306.2

name	Ccdc83 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312934 CCDS:CCDS21446.1 GeneID:75338 MGI:1918255
definition	GO_component : GO:0019028 - viral capsid [Evidence IEA] GO_function : GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 product : coiled-coil domain containing 83 protein_id : NP_083532.1

name	Sytl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91718886 GeneID:83671 MGI:1933366
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0042043 - neurexin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IPI] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : synaptotagmin-like 2 isoform 3 protein_id : NP_113571.2

name	Sytl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91718889 GeneID:83671 MGI:1933366
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0042043 - neurexin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IPI] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : synaptotagmin-like 2 isoform 2 protein_id : NP_001035174.1

name	Sytl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91718891 GeneID:83671 MGI:1933366
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0042043 - neurexin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IPI] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : synaptotagmin-like 2 isoform 1 protein_id : NP_001035175.1

name	Sytl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91718893 GeneID:83671 MGI:1933366
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0042043 - neurexin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IPI] codon_start : 1 note : isoform 4 is encoded by transcript variant 4 product : synaptotagmin-like 2 isoform 4 protein_id : NP_001035176.1

name	Sytl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91718895 GeneID:83671 MGI:1933366
definition	GO_component : GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0042470 - melanosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0042043 - neurexin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0017137 - Rab GTPase binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence IPI] codon_start : 1 note : isoform 5 is encoded by transcript variant 5 product : synaptotagmin-like 2 isoform 5 protein_id : NP_001035177.1

name	Ccdc89 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63561790 GeneID:70054 MGI:1917304
definition	codon_start : 1 product : coiled-coil domain containing 89 protein_id : XP_133591.4

name	Crebzf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:122056689 GeneID:233490 MGI:2675296
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : tyrosine kinase-associated leucine zipper protein LAZipII product : HCF-binding transcription factor Zhangfei protein_id : NP_660133.2

name	Tmem126a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384870 CCDS:CCDS21447.1 GeneID:66271 MGI:1913521
definition	codon_start : 1 product : hypothetical protein LOC66271 protein_id : NP_079736.1

name	Tmem126b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037123 CCDS:CCDS21448.1 GeneID:68472 MGI:1915722
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC68472 protein_id : NP_081010.1

name	B230218P12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82907090 GeneID:78880 MGI:1926130
definition	codon_start : 1 product : hypothetical protein LOC78880 isoform 2 protein_id : XP_901686.1

name	Dlg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118136297 GeneID:23859 MGI:1344351
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0019233 - sensory perception of pain [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IMP] codon_start : 1 note : discs large homolog 2 product : chapsyn-110 protein_id : NP_035937.2

name	LOC666689 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666689
definition	number : 3 pseudo : _no_value

name	LOC666689 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666689
definition	number : 2 pseudo : _no_value

name	LOC666689 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666689
definition	number : 1 pseudo : _no_value

name	LOC621816 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621816
definition	number : 1 pseudo : _no_value

name	LOC100040001 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257584 GeneID:100040001
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 mRNAs, 3374 ESTs, 23 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_031094.1

name	LOC100039943 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257581 GeneID:100039943
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 298 ESTs, 10 Proteins product : similar to High mobility group box 1 pseudo : _no_value transcript_id : XR_031402.1

clone name	MSMg01-408P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208O24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-365O06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-532D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068F19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-162M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001D09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-051N10.T7 (MSMg01no051_n10.b1)	MSMg01-051N10.TJ (MSMg01no051_n10.g1)
ACC	AG280484	AG280485
length	1,460	667
length of high quality (start - end)	60 (124 - 183)	249 (44 - 292)
definition	CHROMAT_FILE: MSMg01no051_n10.b1 PHD_FILE: MSMg01no051_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:06 2005	CHROMAT_FILE: MSMg01no051_n10.g1 PHD_FILE: MSMg01no051_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:06 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TAATTGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTCCTGATC TTTCCAGACCTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCT CATTAACTAAAGAGATGCCCCCGTGTTTTTTGTCTTTGAGTTTTTTTATA TAATGGATTATTACATTGATGGATTTCCATATATTAAATTATCCCTGCAT CTCTGGAATAAAATCTACTTGGTCAGGATGGATGATTGTTTTGATGTGCC CTTGCATTCCCTTACTCATCTTTTTTTCCATCTTCTTTGTCCACCCTCTT CCTTTTTACTCTCTTTTTTTCCTCTCTATCCTCTCTCGTCTCTCTCCTCT TTCTTCCTTTTCTTTATTCTCTATCTCCCTCTTCCTTTTTTTTTTTTCTT CTCTTCTCTCTTCCCCTCTCTTTCTTTTCTCGGTTTTTATTTCTCCCTTT TTTTTTTTTCCCCCCCCCCCCCCTTTGTCCCCCCCCCCCCCCCCACAAAA AAGGGGTGGTCTCTTTCTTTTTTTTCTTTTTTTTCTTTCTCTTTTCTTCC TTTTTTTCTTCTTTTTTTATTCTTCTTCTTTCCTCTTTTTTCTTCCTCTC TTTCTCCTCTCTCTCTCTCTTTTCCTTCTCTCTTCTTTTCTCCACTCCTC CCTCTCTTTTCTCTTTTTTCTCCTTTTTCTTCGTTTTCTTTCCTCCTCTC CTCCCTTCTTTCTTCTCTCTTTTTTTTCTTTCTCCTCTCTTTCCTCTTTC TCTCCTTCTTCCCTTTCTTCTTTTTTTTTTCTCCCTCTCTTTTCTTTTCT CTCCTCCTTTATTTTTATCCTTCTTTCCTCTCATCTTTCCTTCTTTCCTT TTCTCCTCTTCCCTTCTCTCCTTTCCTCCTCTACTACTTCTTCTTTTCTT CTTTTTATCTCCTTCTCTTCTTCTTTTTCTCTTCTCTCTACCTCTTTCTC TTCTCCTCTCTCTCTTTCCTTTTCTTCTTTCCTTATCTTTTATTCTTTCA CTCTCATCACTTCTCTTCTCTCTTTTCCTTCCTTTTCCTTCCTCCTCTTT TTTTATTTTCTCCCTCTCCACCTACTTACCTACTACCTACCTTTCCACCT TCTCTCCCTCTCCTTTTATCTCTTCTTCTTCTTCTCTCTTCATTCTCACT TCTTTCTCTCCTCTCCTTTAATTGTTTCTTTTATTCTCTCCTTTTTCAAC TTATCCCCTCCACCCCTGCTATCATCTTGCCTTCCTCTCCCTTTTCTTCC CTCTTTCTCTCACTTTCTTCTCTTCTCGTATCTCAATATCCTTTCTCGTC ATATTTTTCCNTCTCCATCTTCCTATTATTCTTGTCCTCCCTTTTTAGTT TTCCTTTTTTTTCTTTCCTTTTTTTTTTTTTTTCCCCTTTTTCTTCATTT TATTTTTTATTTATTATTATTTTATCCTTCCCTTTTCTCTGTCTCTTCCT ATTCTTCTTC	GGCGGCGCCTTTCGAAGACTTTAGGTGACCTATAGATTGCCCGCGGAATT CCTCTGCCTCAAAAAGTAAGGGGAGCACACATATAAATGCGGACTCTTCA GTAATTGTCCTAGGCTCTATTTTGAAAGATGATACAGAGAGGAAAAGCAA AACCAAGAAGACTTCCCTCCTAAAATCTTCCCTAGAGACAGAGAATAGTG CATTACCCCTTGGGGCTGCCGACAATGGATCTTCTTGGAAGAAGCCTGAG GACCAAAAAGAAGCCAGTGAGGACCCCAAGAACCAAGTGCTGATATAGAA ATACAAGCGAGTGAGCGACCGAATATCTTTTTGGGAAGGAGGCAAAGCTG GTGCTAAGTTAAAGGCATCACAGCTCACATCTTCTTGCCCCCCCTTTTTT TCTGCTAAAGTACACCAGCCCAGGAAGTCACAAGTCATGTTTCTGGGCAG TTTATCTTCAGGTCAAAGTGACTATATTGATATTATATCTATTTCTGTGT TCTTTTATGAGGATGTCTATTAACCCCAATTCTCACGTTTTGGTTCTTTC GATATATGCTGAGACATCCTTTCTCATTGATGTTGTTTCCTTCTCTTATT TTATGCTTTTTTTTTTCCCTATCTGTCGTTCCTCGCCCAGATTCTTTCCT CTGTTTTTTTTTCTTTC
quality values	Open. Hide. 9 9 9 9 9 12 19 21 14 12 10 12 9 9 10 18 29 29 21 19 8 10 8 21 21 43 34 34 42 42 42 42 32 32 28 19 19 15 13 24 29 39 48 47 43 43 43 59 59 68 68 44 42 20 20 20 26 26 12 12 12 19 15 12 12 18 18 21 24 17 15 15 12 16 18 25 33 34 40 43 32 32 39 37 39 39 39 48 48 48 48 48 41 42 42 41 27 21 9 11 11 10 10 13 9 9 9 9 10 11 12 12 12 12 18 15 9 11 14 19 12 11 10 10 16 24 41 47 59 59 50 44 53 47 47 47 43 46 46 46 46 46 46 48 47 47 50 48 48 48 43 43 37 37 30 32 37 42 42 48 48 43 42 33 32 36 40 43 43 37 21 19 12 19 19 30 26 23 29 14 19 14 28 21 25 10 10 10 11 11 21 23 25 30 28 26 24 24 25 23 32 28 21 21 17 17 22 20 17 17 10 10 10 10 10 18 19 37 28 27 11 10 13 9 9 11 15 16 24 12 12 15 28 21 23 23 28 31 28 28 28 19 12 10 9 9 9 11 11 11 12 15 15 12 11 11 15 13 11 13 11 11 11 10 8 8 8 8 8 8 8 8 8 9 13 13 13 13 10 10 8 8 8 8 6 7 10 8 10 8 8 6 6 8 8 8 10 7 7 6 6 8 8 8 10 10 8 8 8 8 8 8 9 10 15 15 22 24 22 19 13 10 8 10 8 8 8 9 9 10 9 8 8 8 8 8 8 8 8 11 11 12 12 15 12 8 8 8 10 8 8 8 8 6 6 10 10 10 15 10 8 8 8 8 8 11 8 10 10 8 8 8 8 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 11 18 19 14 14 21 10 10 9 8 8 8 10 8 10 14 8 8 6 6 8 8 10 10 8 8 6 6 8 8 9 11 11 13 16 19 15 12 9 9 9 9 9 9 9 12 10 10 9 8 8 8 10 6 6 8 8 10 11 13 24 27 31 37 37 30 27 18 9 9 9 10 15 18 21 17 17 10 10 9 15 10 12 7 7 8 6 9 9 11 12 11 15 11 13 17 17 16 14 18 15 16 12 12 10 10 10 10 19 19 15 9 9 9 8 8 8 8 8 8 8 6 6 8 8 9 9 9 10 19 19 14 12 12 9 9 8 8 10 13 10 12 14 10 10 6 6 8 8 8 8 12 8 10 10 6 6 8 8 8 8 8 10 12 12 12 12 12 12 10 10 10 10 10 10 10 10 10 10 9 9 10 8 8 6 6 8 8 10 10 12 15 10 8 8 8 8 8 8 9 10 9 10 11 12 11 8 10 8 8 8 10 10 10 9 10 10 10 8 8 8 8 8 8 8 10 9 7 10 8 10 10 10 10 8 8 8 6 6 10 10 8 9 8 8 6 6 8 8 8 12 8 9 9 9 11 10 8 8 8 8 8 8 8 8 8 8 9 9 10 9 8 8 8 10 8 8 10 10 10 8 8 8 8 8 8 8 8 6 6 8 8 9 9 9 10 10 10 10 10 10 8 8 8 8 8 8 6 7 8 8 9 8 6 8 7 6 8 8 8 8 6 6 8 8 10 8 8 8 9 10 10 10 10 13 8 8 6 7 8 8 8 8 8 10 12 8 10 8 8 8 10 8 8 8 8 8 8 8 11 8 8 7 8 8 8 10 13 15 13 11 9 9 9 13 10 10 12 8 7 6 8 8 12 12 9 12 9 8 12 12 8 8 6 7 6 8 8 8 9 12 15 8 8 8 8 12 8 8 8 8 9 12 16 15 12 11 11 11 8 8 6 6 8 8 8 6 6 8 8 8 8 8 10 10 10 10 10 11 14 8 8 6 6 8 6 6 10 8 10 11 10 10 13 13 10 8 8 6 6 6 8 7 7 6 6 8 8 16 11 12 8 8 7 7 10 8 8 8 8 8 8 8 8 7 6 10 10 8 8 11 10 8 7 8 8 9 9 11 9 8 8 6 6 8 8 8 8 8 10 8 7 6 8 6 9 8 8 8 8 8 10 8 8 10 10 10 8 8 8 10 8 8 15 12 15 9 8 8 12 13 8 8 8 8 8 8 8 6 6 8 8 8 8 9 10 10 8 8 8 8 8 8 10 10 12 10 8 8 8 8 10 8 12 12 8 8 6 6 8 8 12 8 8 6 7 7 6 8 10 16 13 8 8 6 6 6 8 9 6 6 6 6 8 8 9 8 10 7 7 7 8 8 8 8 10 9 10 8 8 6 6 8 8 8 8 8 8 12 10 12 7 6 8 8 9 10 10 8 8 8 8 7 6 8 8 11 11 9 8 10 8 8 8 8 7 6 13 8 8 10 13 8 9 10 10 9 9 9 8 8 7 7 10 9 11 10 10 8 8 8 8 8 8 8 8 10 10 10 9 8 8 6 6 8 6 6 8 8 6 6 8 8 9 8 8 6 6 8 8 20 20 10 10 8 8 8 8 8 8 8 8 8 12 10 13 10 10 10 10 8 8 8 8 8 6 6 6 6 8 8 10 8 8 10 8 8 10 10 8 8 11 8 8 10 13 8 8 8 8 8 8 9 9 10 12 8 8 8 12 10 10 8 11 8 8 10 8 8 7 7 8 8 9 9 9 8 8 8 8 8 8 9 10 8 8 7 7 6 6 8 7 7 10 8 11 9 11 9 9 7 8 13 8 8 8 10 8 8 8 10 6 6 8 8 15 15 9 6 8 8 8 8 6 6 8 10 8 7 9 9 9 10 10 8 8 6 6 8 8 9 9 9 8 8 6 7 8 8 9 8 8 8 8 8 13 9 9 12 12 13 8 6 6 8 8 12 8 8 6 7 10 6 8 8 8 8 8 6 6 11 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 8 8 8 8 6 6 8 8 10 8 6 6 6 3 0 3 8 7 6 8 8 10 8 8 8 8 8 8 6 6 6 6 8 6 8 10 7 9 8 10 8 9 12 11 13 11 17 14 7 6 6 6 6 10 10 11 12 9 9 10 11 18 25 10 10 8 8 8 13 8 9 9 9 9 9 18 12 11 11 9 9 9 9 9 9 11 11 11 9 9 9 9 17 19 12 14 8 6 8 8 6 6 8 10 8 10 12 8 16 16 11 10 13 9 8 8 6 6 6 6 9 9 13 10 15 13 6 8 6 7 10 8 7 7 7 7 6 8 8 12 13 8 8 6 6 6 6 10 10 11 8 8 8 8 8 8 7 7 13 7 7 8 8 6	Open. Hide. 10 10 17 10 12 15 28 22 21 16 10 11 9 10 10 10 10 11 11 9 17 19 14 22 20 19 19 10 11 12 22 22 30 21 21 11 11 9 9 11 11 18 17 26 22 28 30 33 26 22 15 16 17 24 24 42 26 21 12 10 10 21 21 42 42 32 32 32 37 48 54 57 57 68 57 57 57 57 54 54 54 57 57 59 43 31 31 40 42 50 50 57 57 57 57 57 50 50 50 50 57 47 47 47 47 47 47 47 47 57 57 57 57 57 57 54 57 57 57 57 68 51 50 50 50 51 51 50 50 50 50 50 38 32 26 28 43 43 50 52 43 43 43 43 50 52 52 52 52 57 57 57 57 54 54 54 57 57 57 57 57 57 50 57 57 57 57 57 57 57 57 52 52 50 50 50 50 50 68 57 59 57 57 43 43 37 50 43 52 52 52 52 52 54 57 57 57 57 50 50 47 47 47 57 50 57 48 48 48 43 59 47 47 42 35 42 42 59 59 57 44 44 32 32 32 44 37 39 39 39 39 44 57 57 57 57 57 57 57 46 43 33 37 28 25 26 31 39 30 33 33 39 36 28 25 28 30 30 30 37 32 31 20 20 20 23 28 36 43 43 34 33 33 32 29 33 37 37 43 39 39 39 37 37 36 28 28 23 15 17 11 10 10 10 10 10 10 10 12 18 24 24 29 18 20 20 28 28 32 36 36 23 23 23 23 23 29 28 30 30 37 32 35 43 47 57 57 48 48 43 43 34 34 30 30 24 28 24 30 27 20 19 17 17 15 21 19 22 17 26 15 16 16 24 26 28 25 18 19 12 12 12 12 15 26 16 16 12 12 13 18 19 13 12 12 12 12 13 15 12 17 19 28 28 30 28 25 25 20 16 19 19 10 10 9 10 12 17 30 33 24 24 24 33 29 43 30 24 9 9 9 9 12 10 12 12 12 21 16 17 22 19 18 20 20 32 32 26 21 12 12 11 16 16 21 15 15 13 13 9 10 9 11 9 13 15 12 11 15 15 14 11 17 17 18 18 26 26 28 18 24 13 13 13 21 15 15 21 18 12 12 12 10 10 10 10 10 10 8 8 6 6 10 8 8 8 6 6 6 6 8 8 8 10 8 8 8 8 12 15 10 10 9 19 9 9 9 10 10 11 8 8 10 13 8 9 8 8 6 6 6 9 8 10 11 13 8 8 8 8 8 10 8 8 8 10 10 16 12 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 7 8 8 11 11 11 11 10 11 11 11 11 11 11 8 8 6 7 6 6 6 8 8 8 8 10 10 10 10 11 16 12 12 11 12 11 10 10 13 9 11 10 18 13 13 11 10 10 10 12 11 10 11 20 22 18 18 10 10 10 9 9 9 11 9 9 11 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 8 10 10 8 8 8 8 8 12 11 12 12 12 15 15 19 17 11 10 11 9 6 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no051_n10.g1 MSMg01no051_n10.g1 CHROMAT_FILE:
MSMg01no051_n10.g1 PHD_FILE: MSMg01no051_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:06 2005
         (249 letters)



>mm_chr7_97528508_97529158
          Length = 651

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%), Gaps = 2/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcc-tctgcctcaaaaa-gtaaggggagcacacatataaatgcggactcttcagta 60
           ||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct: 203 gaattccatctgcctcaaaaaagtaaggggagcacacatataaattcagactcttcagta 262

                                                                       
Query: 61  attgtcctaggctctattttgaaagatgatacagagaggaaaagcaaaaccaagaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attgtcctaggctctattttgaaagatgatacagagaggaaaagcaaaaccaagaagact 322

                                                                       
Query: 121 tccctcctaaaatcttccctagagacagagaatagtgcattaccccttggggctgccgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccctcctaaaatcttccctagagacagagaatagtgcattaccccttggggctgccgac 382

                                                                       
Query: 181 aatggatcttcttggaagaagcctgaggaccaaaaagaagccagtgaggaccccaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatggatcttcttggaagaagcctgaggaccaaaaagaagccagtgaggaccccaagaac 442

                    
Query: 241 caagtgctg 249
           |||||||||
Sbjct: 443 caagtgctg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space:   154080
Effective search space used:   154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information