BAC Information

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BAC

Clone NameMSMg01-051N12
Chromosome7 (Build37)
Map Location 71,281,213 - 71,281,505
singlet/doubletsinglet
Overlap genenone
Upstream geneChrna7, Otud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik
Downstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051N12.T7 (MSMg01no051_n12.b1)MSMg01-051N12.TJ (MSMg01no051_n12.g1)
ACCAG280488AG280489
length1,391697
length of high quality
(start - end)
190 (129 - 318)329 (74 - 402)
definitionCHROMAT_FILE: MSMg01no051_n12.b1 PHD_FILE: MSMg01no051_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:07 2005CHROMAT_FILE: MSMg01no051_n12.g1 PHD_FILE: MSMg01no051_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATTGGGCGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTC
TTACTGAATAATCTAGTCCTGGATTTTTTTTCTTGGAAGACTTAATTGCT
GACTCTATTTTACTAGGGGTTACCCCCGCTTGTTTAAGTTGATTATCTGG
TTTTAATTTAACTTCAGTATGTGGTATGTATCAAGAAATATGTCCATTTC
TTTCAAGGTTTCCAATTTGATAGTGTGTAGGTTTTTAAAATATGCCCTTA
AGAGTCCCAGGATTTCCTTGGTCTTTTGTTCTGTCCCCTTTCTCATCTCC
AATTTCATCAATTTGCATTTTTCTTTCTGTCTTTTAGTTAGTTTGTGTAA
GTGTTTACCTCTTTAATTCATTTTCTTCTATATCTACTCCTTTTTTTTTT
CTTATTCTTTGCTTCTTCTCTTTTCTTTTTTTATTTTATTCTCCTCTTTT
TTTTTTTCCCCCCCCCTTTTATTCTCTCTCCTTTTTTAACACAAAAAATT
TTTTTTCTTTCTTTTTTTTCTTTTTTTTTTTTTTTCTCTTTTTTCCTTTT
CTTCTTNTTCTTTCTTTTTTTTCTTTCTTTTCTTCTTTTTCTTCTTCTTT
TTTTCTCTTATTTTACTTCTTTTTCTTCTCTTTCTTCTTTTTCTTTTTCC
TTTTTCTCTTTCCCTTTTTTTTTGCTTTCTTTCTTTTTCTTTTCTCTCTT
TATTTTTTTTTTTTTTCTTTTTTTTCTTTTCTTTTTTTTTTTNTTTCTTT
TTTCTTTCCTCCTTTTTTTTTTTCCTTTTTTTTCTTGTTTTTTCTCTTTC
TTTTATTTTTTTTTTCTTTCTTTTTTCTTTTTTTTTTTCTTTCTCTTCTC
TCCTTTCTTTTTTTTTTTATTATTTTTTTCTTCTTTTTTTTCTTCTCTCT
CTTTCTATTCTTTTTTTCTTCTTATTTCTTATTTTTATTCTTCTTTTTAT
TTCTTTTTTTTTATTTTTCTTTTTTTTATTTTTTTTTTTTTCATTTTTTT
TTCTTTCTTTTTCTTTTCCTTCCTTTTTTTCTTTATTTTTTCTTTTCTTT
CTTTCTTTTTTTTTCCTCTATCTTCTTTTTTATTTTTTTTTTCTATATTC
TTATTCTTTATTTTTCTTTTTTTTTATCTTTCTTTTTTTTCTCTATTTTT
TTTTTTTCTCTTATTCTCTTTTTCTCTCTCTCTTTTCTTCTTTCTTTTTT
ATTTCTCTTTCTTCTTTTCTCTCTTATTCCTTCTTCTCTTTTCTTATTTT
CTTCTATTTCTTTCTCTCTCCTTCTTCTTCTACTTTTTCTTTCTCTTTTT
TTTTTTCTTTTTTATTTTTTCCCCCTTTATCTTCGTTATTTTTTAACTAT
TATATATTTCTTTTCTTTGTTCCTTCTCTTTTTTTTCTTTT
CGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCAGAACACTGCTTTCCTAGAAGCC
CAAGTTGGCCTGGTGAGGGGACAGAGTTGGCAGTGGTGGGAGGGGTACAC
ATGCAGCCTGGTTGCTGCCAGAATAAAGCCCCCTTGAGGCCTGGCTTTGG
CTGCTGTCTGTCCTCTTTCTAGTAATGCCCTGTGATTGTCCTCCTCCTCC
TCCTCCCACTCCTCCTCTTCCTCCTCCTCCTCTTCCTAATCATCTCCCTC
TCCCTTCTCCTCTTTCTCCTCCTCCTCCTCTCCCTCTCCCTTCTCCTCCT
TCTCCTCCTCCTCCTCTTCCTCCTCTTTCTCCTTTTTCTCCTCCCCCTTT
TCCTCCTTCCCCCCCCTAATGTGTGTGATATATGTTATTTTGACTGTGTG
TCTGTATTTATTTTTCTCTTCCCTCTTTCTTGTCTACCCCTTCTTTAATT
ACTTTTTTGTTATTACAAATAGAAAATTTTTTATCATTTTTCATTTTTTT
TCTTTCTACATCTATTTTTTCCTTTTTTTTTTTTCTCATTACATTATTAT
TTTTTTCTATATATTTTTTATTCACTCTTTATCTCACATACTAATTTTTC
TTCTTTTCTTTCTTCCTTTTTTTTTTTTCCCTTTTCTTTTTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_n12.g1 MSMg01no051_n12.g1 CHROMAT_FILE:
MSMg01no051_n12.g1 PHD_FILE: MSMg01no051_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:07 2005
         (329 letters)



>mm_chr7_71281141_71281869
          Length = 729

 Score =  431 bits (223), Expect = e-125
 Identities = 289/329 (87%), Gaps = 36/329 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagaacactgctttcctagaagcccaagttggcctggtgaggggacagagttggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attcagaacactgctttcctagaagcccaagttggcctggtgaggggacagagttggcag 306

                                                                       
Query: 61  tggtgggaggggtacacatgcagcctggttgctgccagaataaagcccccttgaggcctg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 305 tggtgggaggggtacacatgcagcctggttgctgccaggataaagcccccttgaggcctg 246

                                                                       
Query: 121 gctttggctgctgtctgtcctctttctagtaatgccctgtgattgtcctcctcctcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctttggctgctgtctgtcctctttctagtaatgccctgtgattgtcctcctcctcctcc 186

                                                                       
Query: 181 tcccactcctcctcttcctcctcctcctcttcctaatcatctccctctcccttctcctct 240
           ||   |||| ||| |||  ||| ||||||||||   ||  || |||||      ||||||
Sbjct: 185 tc---ctccccct-ttc--ccttctcctcttcc---tc--ct-cctct------tcctct 144

                                                                       
Query: 241 ttctcctcctcctcctctccctctcccttctcctccttctcctcctcctcctcttcctcc 300
                 |||||||||||||||||||||||            |||||||||||||||||||
Sbjct: 143 ------tcctcctcctctccctctccctt------------ctcctcctcctcttcctcc 102

                                        
Query: 301 tctttctcctttttctcctcccccttttc 329
           |||| ||||||||||||||||||||||||
Sbjct: 101 tcttcctcctttttctcctcccccttttc 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)