BAC Information

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BAC

Clone NameMSMg01-052B13
Chromosome7 (Build37)
Map Location 114,030,929 - 114,031,382
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706
Downstream geneOlfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052B13.T7 (MSMg01no052_b13.b1)MSMg01-052B13.TJ (MSMg01no052_b13.g1)
ACCAG280674AG280675
length701699
length of high quality
(start - end)
454 (63 - 516)421 (69 - 489)
definitionCHROMAT_FILE: MSMg01no052_b13.b1 PHD_FILE: MSMg01no052_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:36 2005CHROMAT_FILE: MSMg01no052_b13.g1 PHD_FILE: MSMg01no052_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTC
TCAGATGATCCCTCTTCCTCCAGTGGAGGACTATCAATGCTAATAGCTAG
AGGGGCCTATCACTATATCAACTTAGTGATAGCTGCAAATCTTCATCCCA
TCCTTCAGAACCTCTTTTCCTCAGAATTTTATCAAATATTTCATTCACCA
AAGAATTCTAAGGTACTTTGTGTGGTCTGGAATATGTCTTTTGCTTTTGG
AGGTAAGGAAGGGTTTTGTTTTTTATTTGGGCTTTGAGTACTGAGGTATT
GATTGAAGATCTCAGTTGTCTGTCAATTGTGAAATTCTCTAATTTCTGAC
TCTCTGCTCTCTGTTCTCTAGACACCTTGTCTGAACACCAGCCTGTACAA
GTTGAGACAATAACAGTCATTGTGAAACACTGCTTAGATCTGAGTTAATA
GGATTCTAAGCCCCAGGTAATGAGTCTCAGCATTTCCCTTCAGTACATCT
GGATTTTCCTGGACTCCTAGAGTCTAATGAAAGTGCTTACATTACCAGTA
CCTCACAACAAAGTTACTTAATATCAGTTGAAGTTTCTTCTTTTATCTAT
GTGACTTCTTGCCTTTGAAGGACTACCGACAAGTTATCAGAAATATATTT
TCACACTCTAATATACTTGAGTAGTGACATGGATTACTATTCTATGATAC
N
ACTGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAAAAGCA
CCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAGATCAAAAATT
CAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGACGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAATCTG
GCAGTTCCTCAGACAATTGGACATAGTACTACCAGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCATCATAAGAATGGATACAGAAAATGTGGTACA
TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TCCCTAGGCAAATGTATTGACCTGGAGGGCATCATCCTGAGCGAGGTAAC
CCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAGTGGATATT
ATCCCAGAAACTTATAATACCCAAGATACAAGATACCTTTTGATCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_b13.b1 MSMg01no052_b13.b1 CHROMAT_FILE:
MSMg01no052_b13.b1 PHD_FILE: MSMg01no052_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:36 2005
         (454 letters)



>mm_chr7_114030729_114031582
          Length = 854

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcctccagtggaggactatcaatgctaatagctagaggggcctatcactatatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 654 tcttcctccagtggaggactatcaatgctaatagctagaggggcctatcactagatcaac 595

                                                                       
Query: 61  ttagtgatagctgcaaatcttcatcccatccttcagaacctcttttcctcagaattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttagtgatagctgcaaatcttcatcccatccttcagaacctcttttcctcagaattttat 535

                                                                       
Query: 121 caaatatttcattcaccaaagaattctaaggtactttgtgtggtctggaatatgtctttt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caaataattcattcaccaaagaattctaaggtactttgtgtggtctggaatatgtctttt 475

                                                                       
Query: 181 gcttttggaggtaaggaagggttttgttttttatttgggctttgagtactgaggtattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcttttggaggtaaggaagggttttgttttttatttgggctttgagtactgaggtattga 415

                                                                       
Query: 241 ttgaagatctcagttgtctgtcaattgtgaaattctctaatttctgactctctgctctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgaagatctcagttgtctgtcaattgtgaaattctctaatttctgactctctgctctct 355

                                                                       
Query: 301 gttctctagacaccttgtctgaacaccagcctgtacaagttgagacaataacagtcattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gttctctagacaccttgtctgaacaccagcctgtacaagttgagacaataacagtcattg 295

                                                                       
Query: 361 tgaaacactgcttagatctgagttaataggattctaagccccaggtaatgagtctcagca 420
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 294 tgaaacactgcttagatctgagttactaggattctaagccccaggtaatgagtctcagta 235

                                             
Query: 421 tttcccttcagtacatctggattttcctggactc 454
           |||||||||| |||||||||||||||||||||||
Sbjct: 234 tttcccttcattacatctggattttcctggactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)