Query= MSMg01no052_e18.b1 MSMg01no052_e18.b1 CHROMAT_FILE:
MSMg01no052_e18.b1 PHD_FILE: MSMg01no052_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:52 2005
(658 letters)
>mm_chr7_95655716_95656773
Length = 1058
Score = 1156 bits (598), Expect = 0.0
Identities = 638/652 (97%), Gaps = 3/652 (0%)
Strand = Plus / Plus
Query: 10 tcctaagtgaattacatgaaataatcaatgtgaaatatttagatgagtccctggcttctt 69
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 207 tcctaagtgaattaaatgaaataatcaatgtgaaatatttagatgagtcccttgcttctt 266
Query: 70 gctttccaaagttgttatctagtgatattctgatatgaattaaaatttaaatgtcacata 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctttccaaagttgttatctagtgatattctgatatgaattaaaatttaaatgtcacata 326
Query: 130 gacaaacgaaatttctgtgaccatctgtgccaagagcattgtctacaacaaccatacatt 189
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gacaaacaaaatttctgtgaccatctgtgccaagagcattgtctacaacaaccatacatt 386
Query: 190 tagatgtaaagacatctgaccccaatctttcttctaagagcgcaacaaacactaatggtg 249
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 tagatttaaagacatctgaccccaatctttcttctaagagtgcaacaaacactaatggtg 446
Query: 250 ataagaaaagcttatttgatacctctaagtatattctttcattcattcgactctgttaga 309
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ataggaaaagcttatttgatacctctaagtatattctttcattcattcgactctgttaga 506
Query: 310 tgaaggtctatgagtttgtggggtttgtgtatacctgtgtgtgctcatgtatgtatgtgt 369
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 507 tgaaggtctatgagtttgtggggtttgtgtatacctgtgtgtgctcatgtgtgtgtgtgt 566
Query: 370 gtata--ctcacatgtttgcaatgacttaaggtttatcttttattatatttaatgatgtg 427
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtatatactcacatgtttgcaatgacttaaggtttatcttttattatatttaatgatgtg 626
Query: 428 tatgtttgtattttt-gagtggaagtctaggcatgtatgtgcaggtggcaaaggtatcag 486
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatgtctgtattttttgagtggaagtctaggcatgtatgtgcaggtggcaaaggtatcag 686
Query: 487 atgtgctagatctggagttataggaatttatgagtctccagagaactgaactccattctt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atgtgctagatctggagttataggaatttatgagtctccagagaactgaactccattctt 746
Query: 547 ctctaagaacagttcacactttttttcagatattatatttcaatcatgttatttccctcc 606
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 747 ctctaagaacagttcacactttttttcagatattatattttaatcatgttatttccctcc 806
Query: 607 ctcaactgctcccagatcctccctatctctgtatccaaaccactgctgagat 658
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cttaactgctcccagatcctccctatctctgtatccaaaccactgctgagat 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_e18.g1 MSMg01no052_e18.g1 CHROMAT_FILE:
MSMg01no052_e18.g1 PHD_FILE: MSMg01no052_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:53 2005
(661 letters)
>mm_chr7_95734304_95735363
Length = 1060
Score = 1042 bits (539), Expect = 0.0
Identities = 558/565 (98%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 1 agattaatgatacagatgaactatgcctggaaatcaaaaatgacaggtacttgtcgtaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 563 agattaatgatacagatgaactatgcctggaaatcaaaaatgacaggtacttgtcataga 504
Query: 61 cactgtgcactgaggactaaagagacaaaggtcacctatgactggaaggttcagacaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cactgtgcactgaggactaaagagacaaaggtcacctatgactggaaggttcagacaagt 444
Query: 121 gtttcatgaaatatgctgactttgagctgcacctccaggagtatttgaccttttacaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtttcatgaaatatgctgactttgagctgcacctccaggagtatttgaccttttacaatt 384
Query: 181 ctttcataggtatcacttactagctgatatgtctttaggaaatgcagacaaggactatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 ctttcataggtatcacttactagctgatatgtctttaggaaatgcagacaaagactatgg 324
Query: 241 g-aaaaaatgaaagttataaacgcctagtcttcagctaaatttttttttgttttattata 299
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 gaaaaaaatgaaagttataaacgcctagtcttcagctaaa--tttttttgttttattata 266
Query: 300 cctttcatacatatcatcattttaaatgtgattttaatgtctatcaagtgaccataatgt 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttcatacatatcatcgttttaaatgtgattttaatgtctatcaagtgaccataatgt 206
Query: 360 agatcattattaattttaaaagattattaatatttagaccattgtgacctctacatgcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agatcattattaattttaaaagattattaatatttagaccattgtgacctctacatgcca 146
Query: 420 tttgctggtcttgcaaggtttacaatatctggggacaacaatagtaagcaagcaaaggag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttgctggtcttgcaaggtttacaatatctggggacaacaatagtaagcaagcaaaggag 86
Query: 480 tctgtacctgcatattaggtactgtaagaatacataagattggggctaaagtagcttcta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tctgtacctgcatattaggtactgtaagaatacataagattggggctaaagtagcttcta 26
Query: 540 tctttgatgaaaattttatgttggg 564
|||| ||||||||||||||||||||
Sbjct: 25 tcttggatgaaaattttatgttggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
