BAC Information

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BAC

Clone NameMSMg01-053B04
Chromosome7 (Build37)
Map Location 109,027,432 - 109,027,765
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1
Downstream gene3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B04.T7 (MSMg01no053_b04.b1)MSMg01-053B04.TJ (MSMg01no053_b04.g1)
ACCAG281394AG281395
length683692
length of high quality
(start - end)
547 (74 - 620)334 (84 - 417)
definitionCHROMAT_FILE: MSMg01no053_b04.b1 PHD_FILE: MSMg01no053_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:52 2005CHROMAT_FILE: MSMg01no053_b04.g1 PHD_FILE: MSMg01no053_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACATAATATCTATAATTGCGGCGCTAAACGACTCCTATATCGAGAGGAT
CCGCGGAATTCTGACTATACCTGTCAGGCTTTTTGATTGGAAGATTTTTG
ATACCTCTATGTATTTCCTTAGGCAATATAGGACTGTTTAGATAATTTAC
CTGACCTTGATTTCACTTTAGTACAGAAAGCCATCTAGATTTTTCAGTTT
TGTAGAGCTAAAGGCTTTTGTAGTAGCTTCAGCTGGTTTTTTTAAATTTC
CACAGATTCTGTTATGTCTCCTTTTCATTTCTGATTTTGTTAATTTGCAT
ACTGTCTCTGTGCCCTTTAGTTAGTTTGGCTAAGGGTATATCATATATAT
CTTGTTGATTTTCTTTAAAAACTAGCTCTTGGTTTTGTTGATTCTTTGTA
TCATTCTCTTGGTTTCTCGCTGGTTGATTTCAGCCCTGAGCCTCCAACAT
CCTGACATCTAGTCTTCTTTGGTGCACTTTGCTTCTTTCTGTTCTAGAGC
TTTTAGGTGTGCTTTTAACTCGCTTGTATAAGATCTCTTGAAATTTTTTT
AGGAAGGCATTTAGTGCTTTGGATTCTTTACTTTATGCTGTTTTAATTGT
GCTCCATGATATTTGGTATGGTATGTTTTCACTTTAGTTGAATTCTCTAA
CTTCTTGGAATTCTTTCTTATTTCAACCCTGAT
CTTTTNGCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAGTCAGAGAAA
CCAAGTCTCAAAAAAAACCTCAAACAAACAAACAATAACAAAAAAGAATG
AGCCGCCATGCCCAGCTCTCCACGTGTATCTTATGTCTTATAATTATGTC
TTATAATTTGAGAGTGACAGGCTTGTCATTTCTTCATCACTGGTACGGAA
GCCCAAAGGAGCCTGAATAGTTCTGCTCTGGAAGTCACTGACAAACAGGG
GATTGAAATCAGGGCCTCCAACATCCTATTACCCGCTTAAGTTGGCTTGC
TATGGCCTGTAAGTCCAGGTTCAGGAAATCTGATGTTTTCTGCTGGCTTC
TATTCACACTGAATGCACGTGGTACACACATATACTCAGGCACAAACATG
AAAGCACATACAATAAATAAATGAATATCTATTCTTAAATGCTCATCAGG
GACCAGTCAAGATGACACATCAGTGTGAATGCAATTTGCTGCTACTAAGT
CTGATGCCCTGACTTGGATCTCTAGGACCCACATGGCGCAAGGAGGAACC
CGATTCCCACAAGTCCTCCTCTGACCTTCGTTAGCTGTGGGGGACTGTAC
GCATGCGCTCACTTCCACACACCATACGAACATACTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b04.g1 MSMg01no053_b04.g1 CHROMAT_FILE:
MSMg01no053_b04.g1 PHD_FILE: MSMg01no053_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:53 2005
         (334 letters)



>mm_chr7_109027326_109028059
          Length = 734

 Score =  600 bits (310), Expect = e-176
 Identities = 328/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacagtcagagaaaccaagtctcaaaaaaaacctcaaacaaacaaacaataacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagaacagtcagagaaaccaagtctcaaaaaaaacctcaaacaaacaaacaataacaaaa 381

                                                                       
Query: 61  aagaatgagccgccatgcccagctctccacgtgtatcttatgtcttataattatgtctta 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 aagaatgagccgccatgcccagctctccacgtatatcttatgtcttataattatgtctta 321

                                                                       
Query: 121 taatttgagagtgacaggcttgtcatttcttcatcactggtacggaagcccaaaggagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatttgagagtgacaggcttgtcatttcttcatcactggtacggaagcccaaaggagcc 261

                                                                       
Query: 181 tgaatagttctgctctggaagtcactgacaaacaggggattgaaatcagggcctccaaca 240
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 260 tgaatagttctgctctggaagtcactgacaaacagggggttgaaaccagggcctccaaca 201

                                                                       
Query: 241 tcctattacccgcttaagttggcttgctatggcctgtaagtccaggttcaggaaatctga 300
           ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcccagcacccgcttaagttggcttgctatggcctgtaagtccaggttcaggaaatctga 141

                                             
Query: 301 tgttttctgctggcttctattcacactgaatgca 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 140 tgttttctgctggcttctattcacactgaatgca 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)