BAC Information

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BAC

Clone NameMSMg01-053C24
Chromosome7 (Build37)12 (Build37)
Map Location 137,668,182 - 137,668,37893,924,256 - 93,924,748
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBrwd2, LOC100043150, Fgfr2, LOC546005, Ate1
Downstream geneLOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C24.T7 (MSMg01no053_c24.b1)MSMg01-053C24.TJ (MSMg01no053_c24.g1)
ACCAG281474AG281475
length709691
length of high quality
(start - end)		208 (75 - 282)493 (76 - 568)
definitionCHROMAT_FILE: MSMg01no053_c24.b1 PHD_FILE: MSMg01no053_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:01 2005CHROMAT_FILE: MSMg01no053_c24.g1 PHD_FILE: MSMg01no053_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:01 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(137,668,182 - 137,668,378)(93,924,256 - 93,924,748)
sequence
CAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCG
CGGAATTCTCTTCAGAATTCCAGAAACAGGAATGAATTATTCTGAGTATT
CTGAGAAAAACAAAACCTAGAGTTCTATCTCCTGAGAACTTACCCTTCAA
ACGTGAAAGAAAAATCCAGTTTCCCATGAAGGAATGTGTCTGCCTGCTTT
GAATAAACTGTATATTCTTCAGGGGACGGAATCAATGATGGGTAATTAGG
ATGCTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGCTTCTCTGTGTAG
CCCTGGCTGTCCTGTAATTTACTTTGTTTTATTATCTGGCCTCTAACTCA
GAAATCTGCCTGCCTTTGTTTTTCCCCGCCCTCCCACCAAAGGTGTGCGC
CATCTTGCCCAGCTTTTTTTTTTCTTTCTTTTATATAATACAACACGTTT
TATTTTAATTTATACTTTTCCCCTTACTTTATCATAAACAATTTTCTAGA
CGATTACCATTTTTATTCCCAAATTATTTACTTTACACTCTTTTTGTATT
ACAATTCTCTCCTTTTCCCACTGTTTCATACTATCATCTTAATATACATC
CATTGAATTTTTTTGATATTTTTCTTATCCATGACTTTTTTCCCCTCTAT
ATACTTCTCTGTATTCTCTTTCTATTTCTCACCCTTCTTTTCCTTTTCTT
CTTTCTGCT

TTCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTAAGTGAATCTTCTGCCTTCT
TCCTCTCTGTACCAGCCCATGGTCAGCCACTCTCATTTGTCTCTCCTGTG
AAACTAGTTTAGAAATTAACGTTTCCTTCACCCCACTGCTGCTTTCTCCT
TGACTTGAAGCTCCAAAAGTAAAGCCGAAGTCTGTCCCCCAGGGGGGTTG
AGAGATAATTTGAGGAACAATAACAGTCTCTGTTACGAGCAAGACAGTGA
CACAGTGACTTTATTTGGAGATAAACATACCAGGAAAAAAAAGACAGCAA
GATGAGGAGGAAAAATATATACAAAAGTTTCAAATGATGTGCACTCTCTG
ACTATTCCAAAAATAATTGCAGAAAAAAATAGGGTGTCCTTCAAAAAGGA
AACAGACAAGTAAAATGGGTCATACTGAACTTTATAAAGAACTAATTCTC
AGAGACGATTGCTTAGGGTTACACAAAATCACATGGTTAAAAGTGAAAAA
TCAAAGACTATCCCAGAAATTTCAAAATAGTATTAACAGTCATTGTCTTG
TCAGGTTTTAAAAACTGTAAAAGCCAAACTAGGTATTTTAGCATAATTGT
ATGTGTGTACCATATGGTAGATGGTGCCAAGGATACATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c24.b1 MSMg01no053_c24.b1 CHROMAT_FILE:
MSMg01no053_c24.b1 PHD_FILE: MSMg01no053_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:01 2005
         (208 letters)



>mm_chr7_137667982_137668589
          Length = 608

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggaatgaattattctgagtattctgagaaaaacaaaacctagagttctatctcctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aacaggaatgaattattctgagtattctgagaaaaacaaaacctagagttctatatcctg 260

                                                                       
Query: 61  agaacttacccttcaaacgtgaaagaaaaatccagtttcccatgaaggaatgtgtctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacttacccttcaaacgtgaaagaaaaatccagtttcccatgaaggaatgtgtctgcc 320

                                                                       
Query: 121 tgctttgaataaactgtatattcttcaggggacggaatcaatgatgggtaattaggatgc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 321 tgctttgaataaactgtatattcttcaggggaaggaatcaatgatgggtaattaggatgt 380

                            
Query: 181 tcttttttttttttttt 197
           |||||||||||||||||
Sbjct: 381 tcttttttttttttttt 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no053_c24.g1 MSMg01no053_c24.g1 CHROMAT_FILE:
MSMg01no053_c24.g1 PHD_FILE: MSMg01no053_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:01 2005
         (493 letters)



>mm_chr12_93924056_93924948
          Length = 893

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttaagtgaatcttctgccttcttcctctctgtaccagcccatggtcagccactctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aggttaagtgaatcttctgccttcttcctctctgtaccagcccatggtcagccactctca 634

                                                                       
Query: 61  tttgtctctcctgtgaaactagtttagaaattaacgtttccttcaccccactgctgcttt 120
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 633 tttgtctcttctgtgaaactagtttagaaattaacgtttccttcaccccactactgcttt 574

                                                                       
Query: 121 ctccttgacttgaagctccaaaagtaaagccgaagtctgtcccccaggggggttgagaga 180
            ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 573 gtccttgacttgaagctccaaaggtaaagccgaagtctgtcccccaggggtgttgagaga 514

                                                                       
Query: 181 taatttgaggaacaataacagtctctgttacgagcaagacagtgacacagtgactttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taatttgaggaacaataacagtctctgttacgagcaagacagtgacacagtgactttatt 454

                                                                       
Query: 241 tggagataaacataccaggaaaaaaaagacagcaagatgaggaggaaaaatatatacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tggagataaacataccaggaaaaaaaagacagcaagatgaggaggaaaaatatatacaaa 394

                                                                       
Query: 301 agtttcaaatgatgtgcactctctgactattccaaaaataattgcagaaaaaaatagggt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agcttcaaatgatgtgcactctctgactattccaaaaataattgcagaaaaaaatagggt 334

                                                                       
Query: 361 gtccttcaaaaaggaaacagacaagtaaaatgggtcatactgaactttataaagaactaa 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggccttcaaaaaggaaacagacaagtaaaatgggtcatactgaactttataaagaactaa 274

                                                                       
Query: 421 ttctcagagacgattgcttagggttacacaaaatcacatggttaaaagtgaaaaatcaaa 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 273 ttctcagagacgattgcttagggttacacaaaatcacatggttagaagtgaaaaatcaaa 214

                        
Query: 481 gactatcccagaa 493
           |||||||||||||
Sbjct: 213 gactatcccagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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