BAC Information

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BAC

Clone NameMSMg01-053G03
Chromosome7 (Build37)
Map Location 6,371,804 - 6,372,330
singlet/doubletsinglet
Overlap geneLOC100042450
Upstream geneV1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28
Downstream geneOlfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G03.T7 (MSMg01no053_g03.b1)MSMg01-053G03.TJ (MSMg01no053_g03.g1)
ACCAG281613AG281614
length703748
length of high quality
(start - end)
529 (65 - 593)33 (77 - 109)
definitionCHROMAT_FILE: MSMg01no053_g03.b1 PHD_FILE: MSMg01no053_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:16 2005CHROMAT_FILE: MSMg01no053_g03.g1 PHD_FILE: MSMg01no053_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAATTTGCGGCGCTAAACGACTCCTATTTCGAGAAATCCGCGGAATTCA
AACTTGTGTCTTCATATATTTAAATATACGATATATATTCATATGCATAT
ATATACACAAGTGTAGGTAATGCAGTTTATATGCAGGCAAATATATATTT
CAAGTTTATCCACACCTGCCTCCCTTGTATACATGAATGGGAGTTTATTT
ATCCACTTCCTCTTGATAGACATCTAAGTTATAATGCTTTTGTTTGATTT
CTTGGAGAGGCTACATAGTCTAAGCTGGCCTCAAATTTGAGATCCTCTCT
TGGTCTTTGGAGTGCTGATATTACAGATGTTGTGGCTGCATCCAGTGGTT
GTTAAGATTTGTTTTCTGGTCTCATGTAGCCCAGGCTGGTATTCTGAACT
CACTATGTAGCCGAACTTCTTTCTCTGCTACCTCTCCGAAAGCTGGAGTT
AGACGACTGCACCACCACAGTTTATGCCCACTTTGTGTAGTGCTGGACAT
TGATCCCAGGGCTTTGAGCATGCTAGGCAAGTGTTCTGCCAACTCCCTAG
CCCCAGCAGTTAATATTTTACAAATAATTGTATTTAAAAAAATTATTTGT
TTGTGTATCTGTGTACCTGTACATGTATATACCTGCAAGTAACCTTCACA
GCCCAATAGAAAATTCTGATTCCCTGTAAATGGACTTACAGATTGCTGTG
GAA
ATGCAAGTGAGAGGCCCGGCGAACGCCTGTTTTCCGACGGTGGGGTGAAC
TATAGAAGTTTCCCAAAAGATCGGGGCCAATCTGTTCTACTTAGTAAGTT
CATGGTGAAAGAACGATGACGCCATGGGAAATCCAGTAAGATAGCACAGG
CTAAAAGCACACATTGTCAAGTCTGATTACTTGAACTCCCTATCTGGGAT
CTAGAATGTGAAAGAACTACCTCGTGCAAGATGTCACCTGACTAGTGAGC
TGTATCATGAATTAACCTCCTGTCCCGAGGCATATCACAATTTATTAATT
TGAATTATTTTCCCGTTATCTTTTTTTTTTTCTCTTTTCTCCCTCTCTCT
CCCTTCCGATTTTCTTTTTTTTCCCCCCCCCTCCACCTTTATTTTACCCC
ACTTTATTCTCCCTACCTGTCCCTCTTTCTATTTATTTTTTTTCAATGGC
ATTAATCCCCTTATACATCTTGCCCTTTGGGCTCCTTTTCTCTCCTTTTG
CCTTTTAACCTTTTTTTTTAACTTTCGTCCCTTTTTAACTTTACGCTTAT
CTCCCCCTGTCTATTCTGCTTTTGTTCGCCATTTTACTTATTTTTCTCTT
CTTTCTTTTTCCACCCTCTTTCCATCCCATTCTCTTCTTTTCCTTTCTAT
TCCTCCTTTTATCCATTTCCCCCCCCATCCTATATACACCCATTATTTCC
CTTACTTCCTTTTTTCCCCTTCCCCTTCTTTTCTCTTTTTTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g03.b1 MSMg01no053_g03.b1 CHROMAT_FILE:
MSMg01no053_g03.b1 PHD_FILE: MSMg01no053_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:16 2005
         (529 letters)



>mm_chr7_6371604_6372532
          Length = 929

 Score =  911 bits (471), Expect = 0.0
 Identities = 513/527 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatttaaatatacgatatatattcatatgcatatatatacacaagtgtaggtaatgca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatttaaatatatgatatatattcatatgcatatatatacacaagtgtaggtaatgca 260

                                                                       
Query: 61  gtttatatgcaggcaaatatatatttcaagtttatccacacctgcctcccttgtatacat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtttatatgcaggcaaatatatatttcaagtttatccacacttgcctcccttgtatacat 320

                                                                       
Query: 121 gaatgggagtttatttatccacttcctcttgatagacatctaagttataatgcttttgtt 180
           |||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgggaatctatttacccatttcctcttgatagacatctaagttataatgcttttgtt 380

                                                                       
Query: 181 tgatttcttggagaggctacatagtctaagctggcctcaaatttgagatcctctcttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatttcttggagaggctacatagtctaagctggcctcaaatttgagatcctctcttggt 440

                                                                       
Query: 241 ctttggagtgctgatattacagatgttgtggctgcatccagtggttgttaagatttgttt 300
           |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 441 ctttggagtgctgagattacagatgttgtggctgcgtccagtggttgctaagatttgttt 500

                                                                       
Query: 301 tctggtctcatgtagcccaggctggtattctgaactcactatgtagccgaacttctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctggtctcatgtagcccaggctggtattctgaactcactatgtagccgaacttctttct 560

                                                                       
Query: 361 ctgctacctctccgaaagctggagttagacgactgcaccaccacagtttatgcccacttt 420
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctgctacctctctgaaagctggagttagacgactgcaccagcacagtttatgcccacttt 620

                                                                       
Query: 421 gtgtagtgctggacattgatcccagggctttgagcatgctaggcaagtgttctgccaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtagtgctggacattgatcccagggctttgagcatgctaggcaagtgttctgccaact 680

                                                          
Query: 481 ccctagccccagcagttaatattttacaaataattgtatttaaaaaa 527
           |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 681 ccctagccccagcagttaatattttaaaaatatttgtacttaaaaaa 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)