BAC Information

Click to search

BAC

Clone NameMSMg01-053K08
Chromosome7 (Build37)6 (Build37)
Map Location 89,931,292 - 89,931,64112,981,420 - 12,981,592
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053K08.T7 (MSMg01no053_k08.b1)MSMg01-053K08.TJ (MSMg01no053_k08.g1)
ACCAG281805AG281806
length717735
length of high quality
(start - end)
353 (44 - 396)200 (74 - 273)
definitionCHROMAT_FILE: MSMg01no053_k08.b1 PHD_FILE: MSMg01no053_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:37 2005CHROMAT_FILE: MSMg01no053_k08.g1 PHD_FILE: MSMg01no053_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:37 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,931,292 - 89,931,641)(12,981,420 - 12,981,592)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTAATGTGCCTTAACTCAGGCCTGCAAGCTCACTTGGATGTCTATC
TTGGTAATGGTGAGACCCCAGCATGCTGAACTTCTGCATAATAAAACACT
CTTTGCATTTATATACTATTTGAGTCCGGGGTGTCTGTCATTCTTCCGTG
AATCATGGACCACAATCGTGGACCCTTACACTTTGAAACAGAAACTGGGG
TACTTACCGTCTGCAGTCTCAGACACAAGGCTACTACTTTTCTCGTTTTT
AAAGAAATATTTGGTCATGTAGCACATCTTTTTTGCATCATACTCCATCC
CACATGCCAAGTCCTATTTATTTTGAAGGGCTAAAGGATGACAGTAAAAG
TCCACAGCTTCTGGCAGCAGTGCAATATATTCTCCTCGAGTCTGCATCTT
ACGTAAAGTCGTTTTCATATCCCCCATCTTGTATAAGGTCAGCTTATACA
ACATTCCTGCGCCTTTCCAGTGAACTTTTTGGCTTTACCCCTATCAGCCT
TTCTTGGCACATTATATAACCATGGTTTCCCTGTATCCTTATTATCACTT
TGTTCTCATTACCTTACTCCATATTTATATCACTTCACAATTTCCCAATA
CCTTCTACTTATCTATTCCTTTATATTCTTATTCCCCCCCCATTCCACCC
TTCATTTTCACCTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTCCAAGAACAACCTAGCTATAACA
TATAGAATATAGGCTCTTCTATAAAAGAATATACAAGAGTAGTAGAACAG
AAACTGAATAATAAAAATTCTTAACCCAAACAAAATAACAAGGGGAGATC
AGGAAATACAAATAGCATTTAGCAAGACAGAGATTTAGTGATATATGTGT
GTGTGTGTGTGTGTGTGTGTGTGCGTGTGTATGTTGCTTCTTGTATATTT
TAATTCGTATTTCTCTTCTATTCTTTCTCCCTTTCCCCTCGTTTATTGTT
ATGTTCATTTTGCAAATAACTTACCCTATCCATTCTCCGCGACTTTCTAC
ATTGCCTCCCTTCTCGCTCCCCTCTTTCCTTCTTCTCTTTTACGCTTCAC
AACTCCCCTCTATTTCCCCTCTTTTTTCCCCCCCATTTTTTTCCATCCTC
CCTACTTCCCAATATCCACTTCACGCCTATTCTCCCATTTTTACACTATT
CTTATTCCCCACTTTTCACCTATTATACCAATTTTATTTATTAACCCCCG
CTCTTTATCTCTTCCCTCTCTTCCTTTCACCGCTTATTCCTCTTATCTAC
TGTGTCCCTCCCCCACTACACTTTTCCTCTCATTCCTTTTCCCATTCCTC
TTCCCCTCACTTCTTTCCCCCTCTCTTTCCATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_k08.b1 MSMg01no053_k08.b1 CHROMAT_FILE:
MSMg01no053_k08.b1 PHD_FILE: MSMg01no053_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:37 2005
         (353 letters)



>mm_chr7_89930924_89931676
          Length = 753

 Score =  615 bits (318), Expect = e-180
 Identities = 342/350 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctaatgtgccttaactcaggcctgcaagctcacttggatgtctatcttggta 63
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 718 ggaattccctaatgtgctttaactcaggcctgcgagctcacttggatgtctatcttggta 659

                                                                       
Query: 64  atggtgagaccccagcatgctgaacttctgcataataaaacactctttgcatttatatac 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 atggtgagaccccagcatgctgaacttctgcagaataaaacactctttgcatttatatac 599

                                                                       
Query: 124 tatttgagtccggggtgtctgtcattcttccgtgaatcatggaccacaatcgtggaccct 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 tatttgagtccggggtgtctgtcattcttccgcgaatcatggaccacaatcgtggaccct 539

                                                                       
Query: 184 tacactttgaaacagaaactggggtacttaccgtctgcagtctcagacacaaggctacta 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tactctttgaaacagaaactggggtacttaccgtctgcagtctcagacacaaggctacta 479

                                                                       
Query: 244 cttttctcgtttttaaagaaatatttggtcatgtagcacatcttttttgcatcatactcc 303
           ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct: 478 cttttctcgtttttaaagaaatatttggtcagggagcacatcttttttgcatcaaactcc 419

                                                             
Query: 304 atcccacatgccaagtcctatttattttgaagggctaaaggatgacagta 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atcccacatgccaagtcctatttattttgaagggctaaaggatgacagta 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no053_k08.g1 MSMg01no053_k08.g1 CHROMAT_FILE:
MSMg01no053_k08.g1 PHD_FILE: MSMg01no053_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:37 2005
         (200 letters)



>mm_chr6_12981220_12981819
          Length = 600

 Score =  335 bits (173), Expect = 1e-96
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaagaacaacctagctataacatatagaatataggctcttctataaaagaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccaagaacaacctagctataacatatagaatataggctcttctataaaagaatata 260

                                                                       
Query: 61  caagagtagtagaacagaaactgaataataaaaattcttaacccaaacaaaataacaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagtagtagaacagaaactgaataataaaaattcttaacccaaacaaaataacaagg 320

                                                                
Query: 121 ggagatcaggaaatacaaatagcatttagcaagacagagatttagtgatatat 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagatcaggaaatacaaatagcatttagcaagacagagatttagtgatatat 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)